mRNA_S-dermatodea_contig9625.17641.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9625.17641.1
Unique NamemRNA_S-dermatodea_contig9625.17641.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9625.17641.1 vs. uniprot
Match: A0A7S2C9X7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9X7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.510e-16
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 VCIGGGAGFIGSHLAKKLKSEGWYVICADWKENEFMKPE 117
            VCIGGGAGFIGSHLAK++ SEGWYVIC DWK+NEFM+P+
Sbjct:   22 VCIGGGAGFIGSHLAKRMMSEGWYVICVDWKDNEFMQPD 60
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BLAST of mRNA_S-dermatodea_contig9625.17641.1 vs. uniprot
Match: A0A7S3L783_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L783_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.840e-15
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 VCIGGGAGFIGSHLAKKLKSEGWYVICADWKENEFMKPE 117
            VC+GGGAGFIGSH+AK+LK  G+YVIC DWKENEFMKP+
Sbjct:   17 VCVGGGAGFIGSHIAKRLKENGYYVICVDWKENEFMKPD 55
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BLAST of mRNA_S-dermatodea_contig9625.17641.1 vs. uniprot
Match: A0A7S2CJC0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJC0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.400e-15
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 VCIGGGAGFIGSHLAKKLKSEGWYVICADWKENEFMKP 114
            VCIGGGAGFIGSHLAK++ +EGW+VICADWK+NEFM P
Sbjct:   34 VCIGGGAGFIGSHLAKRMMAEGWHVICADWKDNEFMAP 71
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BLAST of mRNA_S-dermatodea_contig9625.17641.1 vs. uniprot
Match: A0A812WUJ0_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WUJ0_SYMMI)

HSP 1 Score: 72.4 bits (176), Expect = 5.260e-15
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 VCIGGGAGFIGSHLAKKLKSEGWYVICADWKENEFMKP 114
            VC+GGGAGFIGSH+AK+LK  G YV+CADWK+NEFM+P
Sbjct:   25 VCVGGGAGFIGSHIAKRLKEAGCYVVCADWKDNEFMEP 62
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BLAST of mRNA_S-dermatodea_contig9625.17641.1 vs. uniprot
Match: D8LR35_ECTSI (Nad-dependent epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR35_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 5.640e-15
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 VCIGGGAGFIGSHLAKKLKSEGWYVICADWKENEFMKP 114
            V IGGGAGFIGSHLAK+LK EGWYV+CADWK NEFM+P
Sbjct:   38 VFIGGGAGFIGSHLAKRLKGEGWYVVCADWKANEFMEP 75
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BLAST of mRNA_S-dermatodea_contig9625.17641.1 vs. uniprot
Match: A0A1E7FKD6_9STRA (Putative bifunctional dTDP-glucose 4,6-dehydratase/UDP-glucuronate decarboxylase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKD6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.870e-14
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 VCIGGGAGFIGSHLAKKLKSEGWYVICADWKENEFMK 111
            VC+GGGAGFIGSH+AK+LK  GWYVIC DWK NEFMK
Sbjct:   18 VCVGGGAGFIGSHIAKRLKEAGWYVICVDWKTNEFMK 54
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BLAST of mRNA_S-dermatodea_contig9625.17641.1 vs. uniprot
Match: K0TK28_THAOC (Epimerase domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TK28_THAOC)

HSP 1 Score: 68.2 bits (165), Expect = 2.640e-14
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 VCIGGGAGFIGSHLAKKLKSEGWYVICADWKENEFMKPE 117
            VC+GGGAGFIGSH+AK+LK  G+ V   DWKENEFMKPE
Sbjct:   17 VCVGGGAGFIGSHIAKRLKENGYRVTVVDWKENEFMKPE 55
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BLAST of mRNA_S-dermatodea_contig9625.17641.1 vs. uniprot
Match: A0A6U1M3G1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1M3G1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.490e-13
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 VCIGGGAGFIGSHLAKKLKSEGWYVICADWKENEFMKPE 117
            VC+GGG GFIGSHLA +L+ EG++VICADWKENEFMK E
Sbjct:   20 VCVGGGGGFIGSHLAIRLRKEGYHVICADWKENEFMKEE 58
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BLAST of mRNA_S-dermatodea_contig9625.17641.1 vs. uniprot
Match: A0A7R9WN58_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WN58_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.490e-13
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    4 CIGGGAGFIGSHLAKKLKSEGWYVICADWKENEFMKPE 117
            C+GGGAGFIGSH+AK+LK  GWYVI  DWK+NEFMK E
Sbjct:   19 CVGGGAGFIGSHIAKRLKESGWYVIVVDWKKNEFMKEE 56
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BLAST of mRNA_S-dermatodea_contig9625.17641.1 vs. uniprot
Match: A0A836CBP2_9STRA (Nad-dependent epimerase/dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.530e-13
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 VCIGGGAGFIGSHLAKKLKSEGWYVICADWKENEFM 108
            VCI GGAGFIGSHL K+LKSEGWYV+ ADWK NEFM
Sbjct:   33 VCIAGGAGFIGSHLGKRLKSEGWYVVAADWKTNEFM 68
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9625.17641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2C9X7_9STRA4.510e-1682.05Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3L783_9STRA2.840e-1579.49Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2CJC0_9STRA4.400e-1581.58Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A812WUJ0_SYMMI5.260e-1576.32Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
D8LR35_ECTSI5.640e-1584.21Nad-dependent epimerase/dehydratase n=1 Tax=Ectoca... [more]
A0A1E7FKD6_9STRA1.870e-1481.08Putative bifunctional dTDP-glucose 4,6-dehydratase... [more]
K0TK28_THAOC2.640e-1474.36Epimerase domain-containing protein (Fragment) n=1... [more]
A0A6U1M3G1_9STRA2.490e-1376.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9WN58_9STRA2.490e-1376.32Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A836CBP2_9STRA2.530e-1383.33Nad-dependent epimerase/dehydratase n=1 Tax=Tribon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9625contigS-dermatodea_contig9625:1861..1977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue4.8e-12
Seed eggNOG ortholog2880.D8LR35
Preferred nameGME
KEGG rclassRC00289,RC00403,RC01780
KEGG koko:K10046
KEGG ReactionR00889,R07672,R07673
KEGG Pathwayko00053,ko00520,ko01100,ko01110,map00053,map00520,map01100,map01110
KEGG ModuleM00114
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016854,GO:0016857,GO:0019752,GO:0019852,GO:0019853,GO:0036094,GO:0042364,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046394,GO:0047918,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576
EggNOG free text desc.UDP-glucuronate decarboxylase activity
EggNOG OGsCOG0451@1,KOG1429@2759
EC5.1.3.18
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925421.3306668-CDS-S-dermatodea_contig9625:1860..19771622925421.3306668-CDS-S-dermatodea_contig9625:1860..1977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9625 1861..1977 -
1694079921.8504684-CDS-S-dermatodea_contig9625:1860..19771694079921.8504684-CDS-S-dermatodea_contig9625:1860..1977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9625 1861..1977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9625.17641.1prot_S-dermatodea_contig9625.17641.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9625 1861..1977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9625.17641.1

>prot_S-dermatodea_contig9625.17641.1 ID=prot_S-dermatodea_contig9625.17641.1|Name=mRNA_S-dermatodea_contig9625.17641.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=39bp
VCIGGGAGFIGSHLAKKLKSEGWYVICADWKENEFMKPE
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mRNA from alignment at S-dermatodea_contig9625:1861..1977-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9625.17641.1 ID=mRNA_S-dermatodea_contig9625.17641.1|Name=mRNA_S-dermatodea_contig9625.17641.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at S-dermatodea_contig9625:1861..1977- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCTGCATCGGAGGAGGAGCCGGTTTCATCGGGTCGCACCTGGCCAAGAA
GCTCAAGAGCGAAGGGTGGTACGTGATCTGCGCCGACTGGAAGGAAAATG
AGTTCATGAAGCCAGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9625:1861..1977-

>mRNA_S-dermatodea_contig9625.17641.1 ID=mRNA_S-dermatodea_contig9625.17641.1|Name=mRNA_S-dermatodea_contig9625.17641.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at S-dermatodea_contig9625:1861..1977- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCTGCATCGGAGGAGGAGCCGGTTTCATCGGGTCGCACCTGGCCAAGAA
GCTCAAGAGCGAAGGGTGGTACGTGATCTGCGCCGACTGGAAGGAAAATG
AGTTCATGAAGCCAGAGGTCTGCATCGGAGGAGGAGCCGGTTTCATCGGG
TCGCACCTGGCCAAGAAGCTCAAGAGCGAAGGGTGGTACGTGATCTGCGC
CGACTGGAAGGAAAATGAGTTCATGAAGCCAGAG
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