mRNA_S-dermatodea_contig9605.17625.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9605.17625.1
Unique NamemRNA_S-dermatodea_contig9605.17625.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9605.17625.1 vs. uniprot
Match: D7FIX0_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX0_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 4.230e-24
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:   37 QVVNGATAQAMMNRAAALVKWEGIMSQSTRKKAYERVAPGKGRRSHITLKGWFGHGSTEVFCSEEGARAVEPEQSSSTKAIDPHA 291
            ++  GATAQA M+RAAALVKWEGIMS  TR+    +VAPGKG+ S +T+ GW G G+TE+FC++EGA AVEPEQS+  + +D HA
Sbjct:  968 EMEKGATAQATMDRAAALVKWEGIMSDKTRR----QVAPGKGKSSEVTITGWSGGGATEIFCTDEGATAVEPEQSTIGRRVDTHA 1048
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9605.17625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIX0_ECTSI4.230e-2460.00Ankyrin Repeat Transient Receptor Potential Channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9605contigS-dermatodea_contig9605:5694..7502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue6.3e-21
Seed eggNOG ortholog2880.D7FIX0
EggNOG free text desc.temperature-gated cation channel activity
EggNOG OGsCOG0666@1,KOG0510@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size294
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9605.17625.1prot_S-dermatodea_contig9605.17625.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9605 5696..7502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925420.4519541-CDS-S-dermatodea_contig9605:5695..57551622925420.4519541-CDS-S-dermatodea_contig9605:5695..5755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9605 5696..5755 -
1694079921.1956022-CDS-S-dermatodea_contig9605:5695..57551694079921.1956022-CDS-S-dermatodea_contig9605:5695..5755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9605 5696..5755 -
1622925420.4636471-CDS-S-dermatodea_contig9605:6396..64951622925420.4636471-CDS-S-dermatodea_contig9605:6396..6495Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9605 6397..6495 -
1694079921.2133675-CDS-S-dermatodea_contig9605:6396..64951694079921.2133675-CDS-S-dermatodea_contig9605:6396..6495Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9605 6397..6495 -
1622925420.4735904-CDS-S-dermatodea_contig9605:7370..75021622925420.4735904-CDS-S-dermatodea_contig9605:7370..7502Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9605 7371..7502 -
1694079921.230616-CDS-S-dermatodea_contig9605:7370..75021694079921.230616-CDS-S-dermatodea_contig9605:7370..7502Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9605 7371..7502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9605.17625.1

>prot_S-dermatodea_contig9605.17625.1 ID=prot_S-dermatodea_contig9605.17625.1|Name=mRNA_S-dermatodea_contig9605.17625.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
SVLRVVFCFAPWQVVNGATAQAMMNRAAALVKWEGIMSQSTRKKAYERVA
PGKGRRSHITLKGWFGHGSTEVFCSEEGARAVEPEQSSSTKAIDPHA
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mRNA from alignment at S-dermatodea_contig9605:5694..7502-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9605.17625.1 ID=mRNA_S-dermatodea_contig9605.17625.1|Name=mRNA_S-dermatodea_contig9605.17625.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1809bp|location=Sequence derived from alignment at S-dermatodea_contig9605:5694..7502- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTGTGCTTCGTGTGGTGTTTTGTTTCGCCCCTTGGCAGGTGGTGAACGG
CGCGACGGCGCAGGCAATGATGAACCGCGCCGCGGCTCTGGTGAAGTGGG
AGGGGATCATGTCACAGAGCACCCGCAAGAAGGTAAAAAACAGGTCGCAT
CGCTTCTGGTTTCGACGGTGGTAGTACAGGCCGATGGTGTCTCTCATTGC
TGGATCGGCCTTGCCAGACACGCCGATAGGCTTTGCTTCTTCCCGTGTCT
GTGCTCGCTCGCGCCGAAACCTACATTTTGTACACAGGGTTTTCGTAGCT
CTTTTGGAGAAACAAATCCCCCCCCCCCACCTCCCCGTGACAGTTGTTAC
TTCTACCCTTGAATTTTCGACTCCGGGAGTAATGCGATCCCTGCCTGTAG
GTGCGCGCTAGCTCGTGGTGACCCTGCCACCCCCGTAGAGCGCCCCTATG
CAGGTGCTTTGGGGATGACTAAGCCCGGGCATCACACCTTGAGGTGGTGG
CTTAAGCTCGTGGCCTGAAGCACGTGCCCCCCCTCTCGTCCGAAAGAAAT
GATACATTCTGACGGTCTTGCTGCAGCACCGCACGGATATAATCACTACA
AAGGTTCAGCTGCTGCGTTGCGTATCGTAGCAGCACGTGGTCGTTGACGA
ATTACGGTCTGTACCTTAAAACGCGCAAGCCGCGCAGGGCCTCTGCCGTG
TGTCTGTTTGGGTGCAAGAAACAACCACCCGCTATGTAATAGCGGCGTCT
CGTTATCTCACTCCAATCGGTTGTGGTCGCCTGGGTAGAAGCCTGGGATG
ACAGCAGTCCCGAGAGCCACACACTGCTTGAAAGTCCATCACTGTGTCGC
TTTGTCTTGACGTTGTTGCCATGGCCGCTATAACTATTTGTAGTACTGCA
AAGGCCAAAACCTACGCCGTCCAGGACGCTCGGCCGTATCGCGCTCCCGC
GCGCCTGTTGTCCCTCGTTGTATTAATGTATTATCATCCGTGCCTCGGAT
GTGCCAGGCGTACGAGAGAGTCGCGCCCGGCAAGGGGAGACGGTCGCACA
TCACGCTCAAGGGATGGTTCGGACACGGCTCGACCGAAGTCTTTTGCAGC
GAGGAGGTAAGGACCGTAAATTAGGCCCGTGCCGTTTGTTTTCTCGTTCC
CCCCCCCCCTCCCACGGTCTTGAGCTATATCTACTTTTCGTATTTAATAC
CCAAACGAAACGCTTTTTTATAGTAGGGCGTGTGTTAGTGTTATGAAACA
AATTCGATGTGGATCGTTTGGGTCGAACCTCTTTTTTACCTCCGTCACGA
GAGAGGTAACCAAGAACAAGTCGTTTGAACACGTCTACGGTGGCAATGAT
ATTCCCCCAGAGAGCGTGCCGAGCGGTGTGAGCGCTACAATAAGAGTTGC
GTGCCGCCCTTCATCTGGCGGGTACGGCGTACGCCATAAAGTCCGTGCTT
GTCTTTGATCAGACTCGAGCTCGCTTGTACCGCAGCGAATTAGCTCCAAC
TGTTTCGCGCGTCACGATCACATTCTTCTAAACCAACATTACGTAAGGCC
CCGATGTCCTTCCTTGTGCACGAAAGCTCTGCGAATTCGCACTCACAACG
CCATTAGCTCTTGAGCTCTTACTATTTTCGTGCGCAACGCTCGCCTCGAA
TCCTTTTTTTTCCTGGCCATATCTTGCCGACTCGTCTCTTGACGCGTTTG
CACGCACGGTTTCATGCGTTTCGTGTTCCCTGTGCGTGTGTGTGCAGGGG
GCGAGAGCTGTGGAGCCCGAGCAGAGCTCCAGCACCAAGGCCATTGACCC
CCACGCGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9605:5694..7502-

>mRNA_S-dermatodea_contig9605.17625.1 ID=mRNA_S-dermatodea_contig9605.17625.1|Name=mRNA_S-dermatodea_contig9605.17625.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig9605:5694..7502- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTGTGCTTCGTGTGGTGTTTTGTTTCGCCCCTTGGCAGGTGGTGAACGG
CGCGACGGCGCAGGCAATGATGAACCGCGCCGCGGCTCTGGTGAAGTGGG
AGGGGATCATGTCACAGAGCACCCGCAAGAAGTCTGTGCTTCGTGTGGTG
TTTTGTTTCGCCCCTTGGCAGGTGGTGAACGGCGCGACGGCGCAGGCAAT
GATGAACCGCGCCGCGGCTCTGGTGAAGTGGGAGGGGATCATGTCACAGA
GCACCCGCAAGAAGGCGTACGAGAGAGTCGCGCCCGGCAAGGGGAGACGG
TCGCACATCACGCTCAAGGGATGGTTCGGACACGGCTCGACCGAAGTCTT
TTGCAGCGAGGAGGCGTACGAGAGAGTCGCGCCCGGCAAGGGGAGACGGT
CGCACATCACGCTCAAGGGATGGTTCGGACACGGCTCGACCGAAGTCTTT
TGCAGCGAGGAGGGGGCGAGAGCTGTGGAGCCCGAGCAGAGCTCCAGCAC
CAAGGCCATTGACCCCCACGCGGGGGCGAGAGCTGTGGAGCCCGAGCAGA
GCTCCAGCACCAAGGCCATTGACCCCCACGCG
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