mRNA_S-dermatodea_contig9605.17624.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9605.17624.1
Unique NamemRNA_S-dermatodea_contig9605.17624.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9605.17624.1 vs. uniprot
Match: D7FIX0_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX0_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.480e-16
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 3 
Query:    6 SLRLVGKEQRGSMGSVTADDLKAWRERAGEVQEQAKSRQGVVRAQAIIRGYLSRSKSGARFLPDNKDTDDDG 221
            S R VG+  RGS   VT ++++ WR +A EVQEQAKSR+GV RAQA+IRGYLSR+K   RFLPDN++T D+G
Sbjct: 1136 SRRGVGR--RGSSIMVTPEEVEEWRRKALEVQEQAKSRRGVTRAQALIRGYLSRAKLAPRFLPDNQETSDEG 1205
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9605.17624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIX0_ECTSI2.480e-1661.11Ankyrin Repeat Transient Receptor Potential Channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9605contigS-dermatodea_contig9605:3499..4901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue3.9e-13
Seed eggNOG ortholog2880.D7FIX0
EggNOG free text desc.temperature-gated cation channel activity
EggNOG OGsCOG0666@1,KOG0510@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9605.17624.1prot_S-dermatodea_contig9605.17624.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9605 3558..4860 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925420.380745-UTR-S-dermatodea_contig9605:3498..35571622925420.380745-UTR-S-dermatodea_contig9605:3498..3557Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9605 3499..3557 -
1694079921.1333022-UTR-S-dermatodea_contig9605:3498..35571694079921.1333022-UTR-S-dermatodea_contig9605:3498..3557Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9605 3499..3557 -
1622925420.417651-UTR-S-dermatodea_contig9605:4860..49011622925420.417651-UTR-S-dermatodea_contig9605:4860..4901Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9605 4861..4901 -
1694079921.1765583-UTR-S-dermatodea_contig9605:4860..49011694079921.1765583-UTR-S-dermatodea_contig9605:4860..4901Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9605 4861..4901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925420.3908975-CDS-S-dermatodea_contig9605:3557..37101622925420.3908975-CDS-S-dermatodea_contig9605:3557..3710Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9605 3558..3710 -
1694079921.1494505-CDS-S-dermatodea_contig9605:3557..37101694079921.1494505-CDS-S-dermatodea_contig9605:3557..3710Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9605 3558..3710 -
1622925420.4022074-CDS-S-dermatodea_contig9605:4830..48601622925420.4022074-CDS-S-dermatodea_contig9605:4830..4860Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9605 4831..4860 -
1694079921.1633036-CDS-S-dermatodea_contig9605:4830..48601694079921.1633036-CDS-S-dermatodea_contig9605:4830..4860Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9605 4831..4860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9605.17624.1

>prot_S-dermatodea_contig9605.17624.1 ID=prot_S-dermatodea_contig9605.17624.1|Name=mRNA_S-dermatodea_contig9605.17624.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=61bp
MGSVTADDLKAWRERAGEVQEQAKSRQGVVRAQAIIRGYLSRSKSGARFL
PDNKDTDDDG*
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mRNA from alignment at S-dermatodea_contig9605:3499..4901-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9605.17624.1 ID=mRNA_S-dermatodea_contig9605.17624.1|Name=mRNA_S-dermatodea_contig9605.17624.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1403bp|location=Sequence derived from alignment at S-dermatodea_contig9605:3499..4901- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTCGAGCTTGAGGCTCGTCGGGAAGGAGCAGCGGGGCTCGATGGGCTCG
GTGACGGCGGACGACCTGAAGGTGAGGTTGACCGGCCGGCATGTCGTTGA
GCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGTATGGACACCTG
CCAGAGCTAAATCATGTCGCGATGGGGAGGGGGAGAGAGGCGGGGGGGGC
AGGATACAGACACTTGAACCATAATCCCGTAGCATCATACATTACATAAA
CCATGGCATCACACACAAAGCAGGCCTCCACAGGTGTGGGCATCAGCTTG
GACCACCTTTCCTTCCTTCAAATTATGGGACCCCAATGCTCGCTCATGTT
TTTGAAGTATATATGTATGTTTTTTTTTGGGGGGAGGGGGGGGGGGGGAT
GTATCTTCTCGGTGCAAACGTGGCCGCTCAGAGCTCTTTTCGACCCCCTT
CGGACCTGGTCGTTTATTTGTCATTTTCCGGAAAATCGAAAATCGTCATT
GATGGCATACTGCGGTGACGACGGCTGCACGCAGAGTTGCACCGCGGGTG
CCAGCTGGGCGTGGCCGGGCGTGACTTTTCCATCGCCAATAAGGGCGAAG
CTTAAGTAGCCCCGGTTGGGTCGCTCGCTGTTCGATTTGACATACCGTAC
ATACGATGCGCAGATGGCTCCGCAAAACGGGACTCAGTCCCACAAGGGTT
AGTATTAGTGTTGTAGTTGGGTTTCATCGGGTTGCGGAAGTCGTCGGTAG
TTATTGAGTGTACGTGTTTGTCTGTATATGCGTCTTATGGTTGGACGGGG
TAGCTGGTTGCACGCTGTGACGCTGACGGCGTGTGTGTCCGGTACTCTTC
TACTTCGGTATCACCCCCCCCCCGCCCCCCCCTTTCCGATAGAATACCCG
ACGTTACACCCCGTGTGGCGGTGCGTGGCTTCCCTCGATGAGCCGCGACC
ACCGGGTGGGGCGATTTACACTCACGCTTCCCTACACTTGGCGGTCTCGA
GAGGTTGGAATCAGCGTTATGAGCCCGCTCGACTGAGCCTTGTCTCACCC
TCTCCCCTCTCCCCCCCCATTTGTCTAGACAAAACGAAACACGCTCGCCC
CCCACCGCGCATGCGACGTGATATCCTGCTTGATCTCCGACAAACCGCTG
TTGAATGACTCACCCGCACACACACACACGTGCGCGAACAGGCGTGGCGA
GAAAGGGCTGGAGAGGTCCAGGAGCAGGCGAAGTCGAGGCAAGGCGTGGT
GAGGGCCCAGGCCATTATCCGAGGATACCTGTCGCGTTCGAAGTCGGGCG
CGCGATTCCTCCCGGACAATAAAGACACGGATGATGATGGGTGACGAATG
TTCTCAGCACACGATTTTTATTATTTTCCGTCTGTCTTTTTTCAATTGCT
TTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9605:3499..4901-

>mRNA_S-dermatodea_contig9605.17624.1 ID=mRNA_S-dermatodea_contig9605.17624.1|Name=mRNA_S-dermatodea_contig9605.17624.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at S-dermatodea_contig9605:3499..4901- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCTCGGTGACGGCGGACGACCTGAAGATGGGCTCGGTGACGGCGGA
CGACCTGAAGGCGTGGCGAGAAAGGGCTGGAGAGGTCCAGGAGCAGGCGA
AGTCGAGGCAAGGCGTGGTGAGGGCCCAGGCCATTATCCGAGGATACCTG
TCGCGTTCGAAGTCGGGCGCGCGATTCCTCCCGGACAATAAAGACACGGA
TGATGATGGGTGAGCGTGGCGAGAAAGGGCTGGAGAGGTCCAGGAGCAGG
CGAAGTCGAGGCAAGGCGTGGTGAGGGCCCAGGCCATTATCCGAGGATAC
CTGTCGCGTTCGAAGTCGGGCGCGCGATTCCTCCCGGACAATAAAGACAC
GGATGATGATGGGTGA
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