mRNA_S-dermatodea_contig9571.17593.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9571.17593.1
Unique NamemRNA_S-dermatodea_contig9571.17593.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9571.17593.1 vs. uniprot
Match: D8LCC3_ECTSI (RHD3c, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC3_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.900e-13
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 RCHFHEQFEEAFSCVLGGAPDFDNSSRKIAKSARANFLDATK 126
            R HFHEQFEE FSCVLGGA DFD SSR+++K+ R NFL+ATK
Sbjct:  434 RGHFHEQFEEVFSCVLGGAADFDQSSRRMSKTIRQNFLEATK 475
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BLAST of mRNA_S-dermatodea_contig9571.17593.1 vs. uniprot
Match: A0A6H5KVA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVA5_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.960e-13
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 RCHFHEQFEEAFSCVLGGAPDFDNSSRKIAKSARANFLDATK 126
            R HFHEQFEE FSCVLGGA DFD SSR+++K+ R NFL+ATK
Sbjct:  485 RGHFHEQFEEMFSCVLGGAADFDQSSRRMSKTIRQNFLEATK 526
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9571.17593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCC3_ECTSI2.900e-1373.81RHD3c, RHD3/Sey1 family GTPase involved in the ER-... [more]
A0A6H5KVA5_9PHAE3.960e-1373.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9571contigS-dermatodea_contig9571:401..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D8LCC3
EggNOG free text desc.GTP binding
EggNOG OGsKOG2203@1,KOG2203@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925417.554739-CDS-S-dermatodea_contig9571:400..5381622925417.554739-CDS-S-dermatodea_contig9571:400..538Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9571 401..538 +
1694079919.8425963-CDS-S-dermatodea_contig9571:400..5381694079919.8425963-CDS-S-dermatodea_contig9571:400..538Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9571 401..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9571.17593.1prot_S-dermatodea_contig9571.17593.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9571 401..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9571.17593.1

>prot_S-dermatodea_contig9571.17593.1 ID=prot_S-dermatodea_contig9571.17593.1|Name=mRNA_S-dermatodea_contig9571.17593.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=46bp
RCHFHEQFEEAFSCVLGGAPDFDNSSRKIAKSARANFLDATKASW*
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mRNA from alignment at S-dermatodea_contig9571:401..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9571.17593.1 ID=mRNA_S-dermatodea_contig9571.17593.1|Name=mRNA_S-dermatodea_contig9571.17593.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at S-dermatodea_contig9571:401..538+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATGTCACTTCCACGAGCAGTTCGAGGAAGCTTTCTCGTGTGTGCTCGG
GGGAGCACCCGACTTCGACAACTCTTCCCGGAAAATAGCCAAGAGCGCAA
GAGCAAATTTCCTCGACGCGACCAAGGCAAGCTGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9571:401..538+

>mRNA_S-dermatodea_contig9571.17593.1 ID=mRNA_S-dermatodea_contig9571.17593.1|Name=mRNA_S-dermatodea_contig9571.17593.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at S-dermatodea_contig9571:401..538+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATGTCACTTCCACGAGCAGTTCGAGGAAGCTTTCTCGTGTGTGCTCGG
GGGAGCACCCGACTTCGACAACTCTTCCCGGAAAATAGCCAAGAGCGCAA
GAGCAAATTTCCTCGACGCGACCAAGGCAAGCTGGTGAAGATGTCACTTC
CACGAGCAGTTCGAGGAAGCTTTCTCGTGTGTGCTCGGGGGAGCACCCGA
CTTCGACAACTCTTCCCGGAAAATAGCCAAGAGCGCAAGAGCAAATTTCC
TCGACGCGACCAAGGCAAGCTGGTGA
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