mRNA_S-dermatodea_contig95441.17566.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95441.17566.1
Unique NamemRNA_S-dermatodea_contig95441.17566.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig95441.17566.1 vs. uniprot
Match: D8LKQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ1_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 4.290e-12
Identity = 46/96 (47.92%), Postives = 50/96 (52.08%), Query Frame = 1 
Query:    1 RFVHVVARVQNTTGPDWFSLKVDPGIGTACPPPT--PPPPYGSRGVAGVGGGHVA-----------------------AETVVEFVRSQADGSFAL 213
            RFVHVVARVQNTTGPD FSL+VDPGIGTA  P     P P  + G  G   G                           + VVE+VRSQ DGSFAL
Sbjct:  384 RFVHVVARVQNTTGPDCFSLRVDPGIGTASAPAPYLRPRPAAASGSGGFAPGFTPWDGXXXXXXXXXXXXXXXXXXXXHQEVVEYVRSQIDGSFAL 479
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95441.17566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKQ1_ECTSI4.290e-1247.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95441contigS-dermatodea_contig95441:200..418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-07_004360.1
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925415.5538116-CDS-S-dermatodea_contig95441:199..4181622925415.5538116-CDS-S-dermatodea_contig95441:199..418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95441 200..418 -
1694079918.5053384-CDS-S-dermatodea_contig95441:199..4181694079918.5053384-CDS-S-dermatodea_contig95441:199..418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95441 200..418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95441.17566.1prot_S-dermatodea_contig95441.17566.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95441 200..418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95441.17566.1

>prot_S-dermatodea_contig95441.17566.1 ID=prot_S-dermatodea_contig95441.17566.1|Name=mRNA_S-dermatodea_contig95441.17566.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=73bp
RFVHVVARVQNTTGPDWFSLKVDPGIGTACPPPTPPPPYGSRGVAGVGGG
HVAAETVVEFVRSQADGSFALC*
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mRNA from alignment at S-dermatodea_contig95441:200..418-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95441.17566.1 ID=mRNA_S-dermatodea_contig95441.17566.1|Name=mRNA_S-dermatodea_contig95441.17566.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at S-dermatodea_contig95441:200..418- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTTCGTGCATGTAGTGGCCCGAGTACAGAACACGACGGGGCCGGACTG
GTTCTCTCTGAAGGTGGACCCGGGGATCGGCACGGCGTGCCCCCCCCCCA
CGCCACCGCCTCCGTACGGTAGTCGTGGGGTAGCGGGGGTTGGCGGTGGG
CACGTGGCGGCGGAGACTGTCGTTGAGTTTGTGCGCTCCCAGGCCGATGG
GTCGTTCGCGTTGTGTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig95441:200..418-

>mRNA_S-dermatodea_contig95441.17566.1 ID=mRNA_S-dermatodea_contig95441.17566.1|Name=mRNA_S-dermatodea_contig95441.17566.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at S-dermatodea_contig95441:200..418- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTTCGTGCATGTAGTGGCCCGAGTACAGAACACGACGGGGCCGGACTG
GTTCTCTCTGAAGGTGGACCCGGGGATCGGCACGGCGTGCCCCCCCCCCA
CGCCACCGCCTCCGTACGGTAGTCGTGGGGTAGCGGGGGTTGGCGGTGGG
CACGTGGCGGCGGAGACTGTCGTTGAGTTTGTGCGCTCCCAGGCCGATGG
GTCGTTCGCGTTGTGTTGAAGGTTCGTGCATGTAGTGGCCCGAGTACAGA
ACACGACGGGGCCGGACTGGTTCTCTCTGAAGGTGGACCCGGGGATCGGC
ACGGCGTGCCCCCCCCCCACGCCACCGCCTCCGTACGGTAGTCGTGGGGT
AGCGGGGGTTGGCGGTGGGCACGTGGCGGCGGAGACTGTCGTTGAGTTTG
TGCGCTCCCAGGCCGATGGGTCGTTCGCGTTGTGTTGA
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