mRNA_S-dermatodea_contig94832.17516.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94832.17516.1
Unique NamemRNA_S-dermatodea_contig94832.17516.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig94832.17516.1 vs. uniprot
Match: D8LEF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF6_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.510e-24
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    1 RNQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADRTVMIWVPNRKRNARK 153
            + QGDE+QTL GHRDRVYSADFHPTEPKLVS SAD+TV+IW PNRKRN+RK
Sbjct:   32 KGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 82          
BLAST of mRNA_S-dermatodea_contig94832.17516.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.090e-21
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    1 RNQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADRTVMIWVPNRKRNARK 153
            + QGDE+QTLRGHRDRVYS DFHPTEPKLVS SAD+TV+IW PNRKRN+RK
Sbjct:  551 KGQGDEIQTLRGHRDRVYSTDFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 601          
BLAST of mRNA_S-dermatodea_contig94832.17516.1 vs. uniprot
Match: A0A835Z281_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z281_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.460e-15
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1
Query:    1 RNQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADRTVMIWVPNR--KRNARK 153
            + +G ++QTLRGH DRVY+  FHPTEP+LVS SAD+TV IW P++  +RN RK
Sbjct:   72 KGEGGDLQTLRGHNDRVYAVHFHPTEPRLVSGSADQTVRIWGPSKGGRRNGRK 124          
BLAST of mRNA_S-dermatodea_contig94832.17516.1 vs. uniprot
Match: A0A433D2F6_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D2F6_9FUNG)

HSP 1 Score: 66.6 bits (161), Expect = 3.630e-12
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    4 NQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADRTVMIWVPNRKRN 144
            N  + MQ L GH DRVY+  FHPTEP L SCSAD TV IW P +K+N
Sbjct:  148 NSAELMQRLEGHTDRVYAVHFHPTEPILASCSADFTVKIWGPTKKKN 194          
BLAST of mRNA_S-dermatodea_contig94832.17516.1 vs. uniprot
Match: A0A8H7Q4N1_MORIS (GED domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q4N1_MORIS)

HSP 1 Score: 65.9 bits (159), Expect = 2.980e-11
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    4 NQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADRTVMIWVPNRKRNARK 153
            N  + MQ L GH DRVY+A+FHPTEP L SCSAD T+ +W P   R  +K
Sbjct:  444 NTAELMQRLEGHTDRVYAANFHPTEPILASCSADYTIKVWGPGAPRGKKK 493          
BLAST of mRNA_S-dermatodea_contig94832.17516.1 vs. uniprot
Match: A0A4P9Z5R4_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z5R4_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 1.410e-10
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   19 MQTLRGHRDRVYSADFHPTEPKLVSCSADRTVMIWVP 129
            +Q L GH DRVYS DFHPTEP L SCSAD T+ IW P
Sbjct:  385 LQRLEGHTDRVYSVDFHPTEPILCSCSADATIKIWAP 421          
BLAST of mRNA_S-dermatodea_contig94832.17516.1 vs. uniprot
Match: A0A4P9XX37_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XX37_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 1.410e-10
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   19 MQTLRGHRDRVYSADFHPTEPKLVSCSADRTVMIWVP 129
            +Q L GH DRVYS DFHPTEP L SCSAD T+ IW P
Sbjct:  390 LQRLEGHTDRVYSVDFHPTEPILCSCSADATIKIWAP 426          
BLAST of mRNA_S-dermatodea_contig94832.17516.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV)

HSP 1 Score: 60.8 bits (146), Expect = 1.740e-9
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1
Query:   19 MQTLRGHRDRVYSADFHPTEPKLVSCSADRTVMIWVPNRKR 141
            +Q L GH DRVYS DFHP+EP L S SAD TV IW+P   R
Sbjct:  453 LQRLEGHTDRVYSVDFHPSEPILASASADFTVKIWLPRTSR 493          
BLAST of mRNA_S-dermatodea_contig94832.17516.1 vs. uniprot
Match: A0A168T094_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168T094_ABSGL)

HSP 1 Score: 57.8 bits (138), Expect = 2.120e-8
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:   19 MQTLRGHRDRVYSADFHPTEPKLVSCSADRTVMIWVPNRK 138
            MQ + GH DRVYS +FHPTEP L S SAD TV IW P+ K
Sbjct:  466 MQRMEGHTDRVYSVNFHPTEPILASGSADFTVKIWGPSFK 505          
BLAST of mRNA_S-dermatodea_contig94832.17516.1 vs. uniprot
Match: R7QRT1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRT1_CHOCR)

HSP 1 Score: 57.8 bits (138), Expect = 2.120e-8
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 1
Query:   19 MQTLRGHRDRVYSADFHPTEPKLVSCSADRTVMIW 123
            +QTL GH+DRVY  DFHP EP L SCSAD  + IW
Sbjct:  516 LQTLEGHKDRVYGVDFHPNEPILASCSADCGIKIW 550          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94832.17516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LEF6_ECTSI3.510e-2482.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNQ7_9PHAE1.090e-2182.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z281_9STRA9.460e-1560.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A433D2F6_9FUNG3.630e-1261.70Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A8H7Q4N1_MORIS2.980e-1156.00GED domain-containing protein n=1 Tax=Mortierella ... [more]
A0A4P9Z5R4_9FUNG1.410e-1070.27WD40-repeat-containing domain protein n=1 Tax=Sync... [more]
A0A4P9XX37_9FUNG1.410e-1070.27WD40-repeat-containing domain protein n=1 Tax=Tham... [more]
T0QW05_SAPDV1.740e-963.41Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A168T094_ABSGL2.120e-865.00Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
R7QRT1_CHOCR2.120e-865.71Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94832contigS-dermatodea_contig94832:171..326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.5
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog36080.S2J570
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs1GT1G@112252,39VSF@33154,3NZD9@4751,KOG0266@1,KOG0266@2759
COG Functional cat.S
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-00_002100.1
Exons1
Model size156
Cds size138
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.491042-UTR-S-dermatodea_contig94832:170..1881622925411.491042-UTR-S-dermatodea_contig94832:170..188Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig94832 171..188 +
1694079915.664599-UTR-S-dermatodea_contig94832:170..1881694079915.664599-UTR-S-dermatodea_contig94832:170..188Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig94832 171..188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.5030193-CDS-S-dermatodea_contig94832:188..3261622925411.5030193-CDS-S-dermatodea_contig94832:188..326Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94832 189..326 +
1694079915.6839042-CDS-S-dermatodea_contig94832:188..3261694079915.6839042-CDS-S-dermatodea_contig94832:188..326Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94832 189..326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94832.17516.1prot_S-dermatodea_contig94832.17516.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94832 189..326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94832.17516.1

>prot_S-dermatodea_contig94832.17516.1 ID=prot_S-dermatodea_contig94832.17516.1|Name=mRNA_S-dermatodea_contig94832.17516.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=46bp
MQTLRGHRDRVYSADFHPTEPKLVSCSADRTVMIWVPNRKRNARK*
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mRNA from alignment at S-dermatodea_contig94832:171..326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94832.17516.1 ID=mRNA_S-dermatodea_contig94832.17516.1|Name=mRNA_S-dermatodea_contig94832.17516.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at S-dermatodea_contig94832:171..326+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAAATCAGGGCGACGAGATGCAGACGCTTCGAGGGCATCGAGATAGGGT TTACTCGGCCGATTTCCATCCCACGGAGCCGAAGCTGGTGTCCTGCAGCG CTGATAGAACGGTCATGATATGGGTGCCGAACCGAAAGCGAAACGCTCGC AAGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig94832:171..326+

>mRNA_S-dermatodea_contig94832.17516.1 ID=mRNA_S-dermatodea_contig94832.17516.1|Name=mRNA_S-dermatodea_contig94832.17516.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at S-dermatodea_contig94832:171..326+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGACGCTTCGAGGGCATCGAGATAGGGTTTACTCGGCCGATTTCCA
TCCCACGGAGCCGAAGCTGGTGTCCTGCAGCGCTGATAGAACGGTCATGA
TATGGGTGCCGAACCGAAAGCGAAACGCTCGCAAGTAGATGCAGACGCTT
CGAGGGCATCGAGATAGGGTTTACTCGGCCGATTTCCATCCCACGGAGCC
GAAGCTGGTGTCCTGCAGCGCTGATAGAACGGTCATGATATGGGTGCCGA
ACCGAAAGCGAAACGCTCGCAAGTAG
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