mRNA_S-dermatodea_contig9438.17468.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9438.17468.1
Unique NamemRNA_S-dermatodea_contig9438.17468.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9438.17468.1 vs. uniprot
Match: A0A6H5K4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W3_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 6.590e-12
Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:  664 AAVEAFRPPEGFRSSGGAEQSFMYSWGVYCLKAVPEGPDDPAPRFYCLGSAKCRTAKHAIPCRNGDRSNVNKHLKSDHCISSERRVSSQGK 936
            AAV+ F+ P GF   G  + SFMYS GVY  +    G D    +F+CL    CR  K  IPCR GDRSNVN HLKS H +  +  V+ Q +
Sbjct:   89 AAVDNFQAPSGFVKKGCRQDSFMYSLGVYVEQI---GGDQH--KFFCLAGPDCRRKKKVIPCRRGDRSNVNSHLKSVHGMQGKGGVTKQAR 174
[Close]
BLAST of mRNA_S-dermatodea_contig9438.17468.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.380e-10
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:  658 VKAAVEAFRPPEGFRSSGGAEQSFMYSWGVYCLKAVPEGPDDPAPRFYCLGSAKCRTAKHAIPCRNGDRSNVNKHLKSDHCISSERRVSSQGK 936
            V  AV+ F+ PEG+   G  E+S+MYS GVY ++A+         +FYCL    CR     IPC+ GDRSNVN HLK+ H +     V  +GK
Sbjct:   82 VVKAVDDFKVPEGYVRKGSREKSYMYSLGVY-IEALKGDKH----QFYCLVDGTCRRKNKMIPCKGGDRSNVNSHLKNAHGLQGVGGVVKEGK 169
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9438.17468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4W3_9PHAE6.590e-1246.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYQ2_9PHAE1.380e-1043.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9438contigS-dermatodea_contig9438:7098..8147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1050
Cds size660
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925407.9675403-UTR-S-dermatodea_contig9438:7097..74871622925407.9675403-UTR-S-dermatodea_contig9438:7097..7487Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9438 7098..7487 +
1694079913.315123-UTR-S-dermatodea_contig9438:7097..74871694079913.315123-UTR-S-dermatodea_contig9438:7097..7487Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9438 7098..7487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925407.9792643-CDS-S-dermatodea_contig9438:7487..81471622925407.9792643-CDS-S-dermatodea_contig9438:7487..8147Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9438 7488..8147 +
1694079913.3255184-CDS-S-dermatodea_contig9438:7487..81471694079913.3255184-CDS-S-dermatodea_contig9438:7487..8147Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9438 7488..8147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9438.17468.1prot_S-dermatodea_contig9438.17468.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9438 7488..8147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9438.17468.1

>prot_S-dermatodea_contig9438.17468.1 ID=prot_S-dermatodea_contig9438.17468.1|Name=mRNA_S-dermatodea_contig9438.17468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=220bp
MDQQAPEPAPAPAPAPEPACPVPTDSGISDAAAQPSPTSRAKREAPPQPA
TPKPRSSGKKKTPKRSPVRVRSKKTWSTVTNATIEVPEDVKAAVEAFRPP
EGFRSSGGAEQSFMYSWGVYCLKAVPEGPDDPAPRFYCLGSAKCRTAKHA
IPCRNGDRSNVNKHLKSDHCISSERRVSSQGKGAERVEEDGCGTAADFAR
PHFFDADERERCATSFVIW*
back to top

mRNA from alignment at S-dermatodea_contig9438:7098..8147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9438.17468.1 ID=mRNA_S-dermatodea_contig9438.17468.1|Name=mRNA_S-dermatodea_contig9438.17468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1050bp|location=Sequence derived from alignment at S-dermatodea_contig9438:7098..8147+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCATCAATCAACCACAACCAATCAATCAATCGAAACGAAACAAACGACGA
TGCCCCCGGTATAAAAAACGCTCGCTCGGAATAAAACCCGGAACATCAGG
GTATGCATGGAATATCTCTGTTCGGTATGAATATCCCCATTCGGAATACT
GGGGGATCACTTGCAGTCATCCATCGGTATCATATCCCATCTCGGAATAC
AGAATCATTGGAATACACCAACATGTCTGGCCGGTAGCACGGTCCACACC
CTCACTTGTCTTCTTATTAGGTACCGGGGTCATTTGGCACCCACAGCCCA
CAGCAAGGCAGGTTCCCCCTGTACCGAGCTCTCACCCCCTCCTACCGCGG
TACCAAGAACAACACCCCACATCTGTCTCCGCGATCTATCATGGATCAAC
AAGCTCCCGAGCCAGCGCCAGCGCCAGCACCAGCGCCGGAGCCTGCATGC
CCAGTGCCGACCGATTCAGGAATAAGCGATGCTGCTGCACAGCCCAGCCC
CACCTCGCGAGCAAAGAGAGAAGCCCCCCCCCAGCCAGCAACCCCGAAAC
CACGATCATCAGGCAAAAAGAAGACCCCGAAGAGGTCACCGGTACGTGTG
CGGTCAAAGAAAACGTGGTCAACCGTCACTAACGCGACGATCGAGGTTCC
CGAGGATGTCAAAGCAGCGGTCGAAGCCTTCAGGCCGCCGGAAGGCTTCA
GGTCGTCCGGGGGTGCCGAGCAGAGCTTCATGTACTCATGGGGCGTGTAC
TGCTTGAAAGCCGTTCCAGAAGGCCCGGATGACCCTGCACCCCGCTTTTA
CTGCCTGGGAAGTGCCAAGTGCCGCACCGCGAAGCACGCGATCCCTTGCC
GAAATGGTGACAGGAGCAACGTGAACAAGCACCTCAAGAGCGACCACTGC
ATCTCGAGCGAGAGGAGGGTCTCCTCTCAAGGGAAGGGCGCCGAACGTGT
GGAGGAAGACGGTTGCGGTACTGCTGCTGACTTCGCTCGTCCACACTTTT
TCGACGCCGACGAGCGAGAAAGGTGTGCGACTTCATTTGTGATATGGTAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9438:7098..8147+

>mRNA_S-dermatodea_contig9438.17468.1 ID=mRNA_S-dermatodea_contig9438.17468.1|Name=mRNA_S-dermatodea_contig9438.17468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at S-dermatodea_contig9438:7098..8147+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATCAACAAGCTCCCGAGCCAGCGCCAGCGCCAGCACCAGCGCCGGA
GCCTGCATGCCCAGTGCCGACCGATTCAGGAATAAGCGATGCTGCTGCAC
AGCCCAGCCCCACCTCGCGAGCAAAGAGAGAAGCCCCCCCCCAGCCAGCA
ACCCCGAAACCACGATCATCAGGCAAAAAGAAGACCCCGAAGAGGTCACC
GGTACGTGTGCGGTCAAAGAAAACGTGGTCAACCGTCACTAACGCGACGA
TCGAGGTTCCCGAGGATGTCAAAGCAGCGGTCGAAGCCTTCAGGCCGCCG
GAAGGCTTCAGGTCGTCCGGGGGTGCCGAGCAGAGCTTCATGTACTCATG
GGGCGTGTACTGCTTGAAAGCCGTTCCAGAAGGCCCGGATGACCCTGCAC
CCCGCTTTTACTGCCTGGGAAGTGCCAAGTGCCGCACCGCGAAGCACGCG
ATCCCTTGCCGAAATGGTGACAGGAGCAACGTGAACAAGCACCTCAAGAG
CGACCACTGCATCTCGAGCGAGAGGAGGGTCTCCTCTCAAGGGAAGGGCG
CCGAACGTGTGGAGGAAGACGGTTGCGGTACTGCTGCTGACTTCGCTCGT
CCACACTTTTTCGACGCCGACGAGCGAGAAAGGTGTGCGACTTCATTTGT
GATATGGTAGATGGATCAACAAGCTCCCGAGCCAGCGCCAGCGCCAGCAC
CAGCGCCGGAGCCTGCATGCCCAGTGCCGACCGATTCAGGAATAAGCGAT
GCTGCTGCACAGCCCAGCCCCACCTCGCGAGCAAAGAGAGAAGCCCCCCC
CCAGCCAGCAACCCCGAAACCACGATCATCAGGCAAAAAGAAGACCCCGA
AGAGGTCACCGGTACGTGTGCGGTCAAAGAAAACGTGGTCAACCGTCACT
AACGCGACGATCGAGGTTCCCGAGGATGTCAAAGCAGCGGTCGAAGCCTT
CAGGCCGCCGGAAGGCTTCAGGTCGTCCGGGGGTGCCGAGCAGAGCTTCA
TGTACTCATGGGGCGTGTACTGCTTGAAAGCCGTTCCAGAAGGCCCGGAT
GACCCTGCACCCCGCTTTTACTGCCTGGGAAGTGCCAAGTGCCGCACCGC
GAAGCACGCGATCCCTTGCCGAAATGGTGACAGGAGCAACGTGAACAAGC
ACCTCAAGAGCGACCACTGCATCTCGAGCGAGAGGAGGGTCTCCTCTCAA
GGGAAGGGCGCCGAACGTGTGGAGGAAGACGGTTGCGGTACTGCTGCTGA
CTTCGCTCGTCCACACTTTTTCGACGCCGACGAGCGAGAAAGGTGTGCGA
CTTCATTTGTGATATGGTAG
back to top