mRNA_S-dermatodea_contig9431.17462.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9431.17462.1
Unique NamemRNA_S-dermatodea_contig9431.17462.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9431.17462.1 vs. uniprot
Match: A0A6H5JLI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI6_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.080e-52
Identity = 154/382 (40.31%), Postives = 192/382 (50.26%), Query Frame = 1 
Query:    1 MLHR-ECEVRVCQARHLVPKRGSESTSALRPNNNRGLSLYTLISHDGVHIPTEACRDIESPAWQRVAVFNLKLRCEKVDGEKE----KPASARESSSNSGATEQTRKGEGGKVTP---------------------------------------SRNPFA------QSLNPFADNFVPPSPRXXXXXXXXXXEP---------ATQLPLRTSLVLHLRVLSDSLVSKEVVGEVAVDLVPLLESGGDHLATDRLGHV---GSIPLKGL----------HDQETLAVDTWVALRERTGELRVQILMKPGCLEPAVNGRRKPSADLNG-RSKEVRFDEMARAGLVKTTVGAEQLSLDDRLLEIQEQYDFIAATGYRQGRPDGEAG 927
            +LHR +CEVRVCQARHLVPK G +     +P      +++ L+S DGVH  TE+CR+IE P+W+RVAVF+L L C   +G       KP   R+S+  +GA                                                     S NPFA      Q    FA NFVPP+             P         A    LR S+VLHLRVL   L SKEV+G+VAVDLVPLL SGGD LATDRL  +      PL  L          H    +AVDTWV+LR+ T ELRVQILMK    EPA +      A + G  +    FD ++  GLVKT++  EQ SLD+RLLE+QE YDF A +GYR+G+PD + G
Sbjct:    2 LLHRRQCEVRVCQARHLVPK-GRKRNGDDKPAVLVADAVWALMSIDGVHNTTESCRNIEHPSWERVAVFDLNL-CRAAEGIARGAPVKPP--RDSNPTAGAXXXXXXXXXXXXXXXXXFERPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNPFAVAEAETQXXXXFASNFVPPAATPLSSPPPQAASPRSKSSCPPAAAAWVLRASMVLHLRVLHGRLRSKEVLGDVAVDLVPLLRSGGDRLATDRLEWLEEEDGAPLLPLGNGDAGVITTHPPPVVAVDTWVSLRQGTAELRVQILMKTP-REPASSNVGSQRAQVGGDEAWAAAFDALSADGLVKTSLDLEQRSLDERLLEVQETYDFSAGSGYREGKPDEDEG 378
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BLAST of mRNA_S-dermatodea_contig9431.17462.1 vs. uniprot
Match: A0A836CAD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.630e-14
Identity = 89/302 (29.47%), Postives = 123/302 (40.73%), Query Frame = 1 
Query:   19 EVRVCQARHL---------VPKRGSESTSALRPNNNRGLS------------LYTLISHDGVHIPTEACRDIESPAWQRVAVFNLKLRCEKVDGEKEKPASARESSSNSGATEQTRKGEG-GKVTPSRNPFAQSLNPFADNFVPPSPRXXXXXXXXXXEPATQLPLRTS------LVLHLRVLSDSLVSKEVVGEVAVDLVPLLESGGDHLATDRLGHVGS-------------------IPL---------KGLH------------------DQETLAVDTWVALRERTGELRVQILMKP 702
            EVRV + RHL         VP+ G + +   + + + G +            L   I+    H+ TE C D++ P W +VA F         D      A+  E   ++ A E T      G  + +  P  Q L P   +   PSP             AT     T+        LHLRV SDSLVSK+++GEV VD+  L+ +GG  L TDR+G+  S                   +PL         +  H                  D E LAVDTWVALR+  GELRVQ+L++P
Sbjct:    8 EVRVAEGRHLFRAVSRGSGVPEAGDDGSERKKYSASAGAATSGRAPPLLNATLCVSITLGDKHVLTEQCADLQRPVWDKVASFTYDPCPPPADA----AAAPHEVEPSAAAVEMTDMFRAMGLPSRAAEPHDQQL-PLEPHSGKPSPPAAAAGLQQLSASATAGAAPTADAHARRRALHLRVFSDSLVSKDLLGEVTVDVAALVATGGALLVTDRIGYTDSGGAGSRGEEDDGDSSGAFMVPLALAASPTPPRSHHSERVSANGAAAAAVASAVDFEPLAVDTWVALRQGDGELRVQVLVRP 304
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9431.17462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLI6_9PHAE1.080e-5240.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAD2_9STRA6.630e-1429.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9431contigS-dermatodea_contig9431:5902..7111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size927
Cds size927
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9431.17462.1prot_S-dermatodea_contig9431.17462.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9431 5902..7111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925407.4948375-CDS-S-dermatodea_contig9431:5901..60511622925407.4948375-CDS-S-dermatodea_contig9431:5901..6051Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9431 5902..6051 -
1694079913.0145247-CDS-S-dermatodea_contig9431:5901..60511694079913.0145247-CDS-S-dermatodea_contig9431:5901..6051Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9431 5902..6051 -
1622925407.5078537-CDS-S-dermatodea_contig9431:6144..68621622925407.5078537-CDS-S-dermatodea_contig9431:6144..6862Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9431 6145..6862 -
1694079913.0254076-CDS-S-dermatodea_contig9431:6144..68621694079913.0254076-CDS-S-dermatodea_contig9431:6144..6862Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9431 6145..6862 -
1622925407.5202808-CDS-S-dermatodea_contig9431:7052..71111622925407.5202808-CDS-S-dermatodea_contig9431:7052..7111Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9431 7053..7111 -
1694079913.0357654-CDS-S-dermatodea_contig9431:7052..71111694079913.0357654-CDS-S-dermatodea_contig9431:7052..7111Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9431 7053..7111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9431.17462.1

>prot_S-dermatodea_contig9431.17462.1 ID=prot_S-dermatodea_contig9431.17462.1|Name=mRNA_S-dermatodea_contig9431.17462.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=309bp
MLHRECEVRVCQARHLVPKRGSESTSALRPNNNRGLSLYTLISHDGVHIP
TEACRDIESPAWQRVAVFNLKLRCEKVDGEKEKPASARESSSNSGATEQT
RKGEGGKVTPSRNPFAQSLNPFADNFVPPSPRPRRPAPTPPPEPATQLPL
RTSLVLHLRVLSDSLVSKEVVGEVAVDLVPLLESGGDHLATDRLGHVGSI
PLKGLHDQETLAVDTWVALRERTGELRVQILMKPGCLEPAVNGRRKPSAD
LNGRSKEVRFDEMARAGLVKTTVGAEQLSLDDRLLEIQEQYDFIAATGYR
QGRPDGEAG
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mRNA from alignment at S-dermatodea_contig9431:5902..7111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9431.17462.1 ID=mRNA_S-dermatodea_contig9431.17462.1|Name=mRNA_S-dermatodea_contig9431.17462.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1210bp|location=Sequence derived from alignment at S-dermatodea_contig9431:5902..7111- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGCACCGAGAGTGCGAGGTTCGAGTGTGTCAAGCTCGCCATCTGGT
CCCCAAACGGTTGAGGTGAGGGTGGTCTGGTTGAGGTTGCTTCGAGCAGC
ACAGCAGCCGGATAGCCCAACAGCCGCACTCACAGGTCATCGATCAGTGT
CACCACGCGACGCGACGATGCAATGCAGTCAGCCCGTCGTATCCTTCCCA
TTGAAAAAAACTCACCTGTATACTTGCCGTTGCCCGTTCCTCGCCGCAGT
GGGTCCGAGAGCACGAGTGCATTACGTCCAAACAACAACCGAGGTCTCTC
GCTATACACGCTCATCAGCCACGATGGAGTCCACATCCCAACAGAAGCCT
GCCGCGACATAGAGAGTCCAGCATGGCAGCGAGTGGCTGTATTTAATCTC
AAACTTCGCTGCGAGAAGGTCGACGGAGAGAAGGAAAAGCCAGCATCGGC
GAGGGAGTCATCATCAAACTCTGGTGCCACCGAGCAAACCAGGAAGGGCG
AAGGAGGGAAGGTGACGCCATCCCGCAATCCTTTCGCGCAATCGCTCAAC
CCTTTTGCGGATAACTTCGTCCCACCATCCCCGCGGCCGCGGCGACCTGC
CCCCACACCTCCACCTGAACCTGCGACACAGCTTCCTCTTCGCACGTCCC
TGGTGCTACACCTTCGCGTGCTTAGCGACAGCCTGGTATCAAAGGAAGTT
GTAGGGGAAGTGGCCGTTGACCTGGTTCCGCTTCTCGAGTCGGGAGGAGA
CCACCTGGCAACGGATCGACTCGGGCACGTGGGGAGTATTCCGCTCAAAG
GCCTGCACGATCAAGAGACTCTCGCTGTGGACACGTGGGTTGCCCTTCGC
GAGCGAACCGGGGAACTTCGGGTTCAGATCCTGATGAAGCCTGGATGCTT
GGAGCCGGCCGTCAACGGACGTAGGAAACCTTCTGCAGACCTCAACGGAC
GCTCTAAGGAGGTGCGGGTCGCTCCTGGAGCTTCCGTCGGGACGAAGGCG
CCGGAAGGTGGGACCAAATTTGGGTACCAGTTAGAGACCCAAGGGGCCCC
CTGGCCTGAGTTTGACGAGATGGCCAGAGCTGGGCTTGTGAAGACTACCG
TCGGTGCGGAGCAGCTGTCGCTCGATGACCGTCTGTTGGAAATACAAGAG
CAGTACGACTTCATTGCAGCAACTGGGTACCGGCAAGGACGACCAGATGG
CGAAGCGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9431:5902..7111-

>mRNA_S-dermatodea_contig9431.17462.1 ID=mRNA_S-dermatodea_contig9431.17462.1|Name=mRNA_S-dermatodea_contig9431.17462.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at S-dermatodea_contig9431:5902..7111- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGCACCGAGAGTGCGAGGTTCGAGTGTGTCAAGCTCGCCATCTGGT
CCCCAAACGATGCTGCACCGAGAGTGCGAGGTTCGAGTGTGTCAAGCTCG
CCATCTGGTCCCCAAACGTGGGTCCGAGAGCACGAGTGCATTACGTCCAA
ACAACAACCGAGGTCTCTCGCTATACACGCTCATCAGCCACGATGGAGTC
CACATCCCAACAGAAGCCTGCCGCGACATAGAGAGTCCAGCATGGCAGCG
AGTGGCTGTATTTAATCTCAAACTTCGCTGCGAGAAGGTCGACGGAGAGA
AGGAAAAGCCAGCATCGGCGAGGGAGTCATCATCAAACTCTGGTGCCACC
GAGCAAACCAGGAAGGGCGAAGGAGGGAAGGTGACGCCATCCCGCAATCC
TTTCGCGCAATCGCTCAACCCTTTTGCGGATAACTTCGTCCCACCATCCC
CGCGGCCGCGGCGACCTGCCCCCACACCTCCACCTGAACCTGCGACACAG
CTTCCTCTTCGCACGTCCCTGGTGCTACACCTTCGCGTGCTTAGCGACAG
CCTGGTATCAAAGGAAGTTGTAGGGGAAGTGGCCGTTGACCTGGTTCCGC
TTCTCGAGTCGGGAGGAGACCACCTGGCAACGGATCGACTCGGGCACGTG
GGGAGTATTCCGCTCAAAGGCCTGCACGATCAAGAGACTCTCGCTGTGGA
CACGTGGGTTGCCCTTCGCGAGCGAACCGGGGAACTTCGGGTTCAGATCC
TGATGAAGCCTGGATGCTTGGAGCCGGCCGTCAACGGACGTAGGAAACCT
TCTGCAGACCTCAACGGACGCTCTAAGGAGGTGCGGTGGGTCCGAGAGCA
CGAGTGCATTACGTCCAAACAACAACCGAGGTCTCTCGCTATACACGCTC
ATCAGCCACGATGGAGTCCACATCCCAACAGAAGCCTGCCGCGACATAGA
GAGTCCAGCATGGCAGCGAGTGGCTGTATTTAATCTCAAACTTCGCTGCG
AGAAGGTCGACGGAGAGAAGGAAAAGCCAGCATCGGCGAGGGAGTCATCA
TCAAACTCTGGTGCCACCGAGCAAACCAGGAAGGGCGAAGGAGGGAAGGT
GACGCCATCCCGCAATCCTTTCGCGCAATCGCTCAACCCTTTTGCGGATA
ACTTCGTCCCACCATCCCCGCGGCCGCGGCGACCTGCCCCCACACCTCCA
CCTGAACCTGCGACACAGCTTCCTCTTCGCACGTCCCTGGTGCTACACCT
TCGCGTGCTTAGCGACAGCCTGGTATCAAAGGAAGTTGTAGGGGAAGTGG
CCGTTGACCTGGTTCCGCTTCTCGAGTCGGGAGGAGACCACCTGGCAACG
GATCGACTCGGGCACGTGGGGAGTATTCCGCTCAAAGGCCTGCACGATCA
AGAGACTCTCGCTGTGGACACGTGGGTTGCCCTTCGCGAGCGAACCGGGG
AACTTCGGGTTCAGATCCTGATGAAGCCTGGATGCTTGGAGCCGGCCGTC
AACGGACGTAGGAAACCTTCTGCAGACCTCAACGGACGCTCTAAGGAGGT
GCGGTTTGACGAGATGGCCAGAGCTGGGCTTGTGAAGACTACCGTCGGTG
CGGAGCAGCTGTCGCTCGATGACCGTCTGTTGGAAATACAAGAGCAGTAC
GACTTCATTGCAGCAACTGGGTACCGGCAAGGACGACCAGATGGCGAAGC
GGGCTTTGACGAGATGGCCAGAGCTGGGCTTGTGAAGACTACCGTCGGTG
CGGAGCAGCTGTCGCTCGATGACCGTCTGTTGGAAATACAAGAGCAGTAC
GACTTCATTGCAGCAACTGGGTACCGGCAAGGACGACCAGATGGCGAAGC
GGGC
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