mRNA_S-dermatodea_contig9421.17453.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9421.17453.1
Unique NamemRNA_S-dermatodea_contig9421.17453.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9421.17453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9421contigS-dermatodea_contig9421:725..1454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size730
Cds size459
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925406.58855-UTR-S-dermatodea_contig9421:724..9951622925406.58855-UTR-S-dermatodea_contig9421:724..995Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9421 725..995 +
1694079912.326852-UTR-S-dermatodea_contig9421:724..9951694079912.326852-UTR-S-dermatodea_contig9421:724..995Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9421 725..995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925406.600681-CDS-S-dermatodea_contig9421:995..14541622925406.600681-CDS-S-dermatodea_contig9421:995..1454Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9421 996..1454 +
1694079912.3387012-CDS-S-dermatodea_contig9421:995..14541694079912.3387012-CDS-S-dermatodea_contig9421:995..1454Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9421 996..1454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9421.17453.1prot_S-dermatodea_contig9421.17453.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9421 996..1454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9421.17453.1

>prot_S-dermatodea_contig9421.17453.1 ID=prot_S-dermatodea_contig9421.17453.1|Name=mRNA_S-dermatodea_contig9421.17453.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=153bp
MYFLFVYRTTVLKKKGQGHVPIGTLVRVCVCVGVYVFFFCEINLWRLYLM
TRFQCYLIFVLCRESNNTRLEHWHRTRATRLPRNKHVRALFSPFFFVLFC
FVFSRGNNGKEQKNCFVYLIGKVSIMRPPPPVSARICTKVSFSPKSVLVR
AGC
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mRNA from alignment at S-dermatodea_contig9421:725..1454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9421.17453.1 ID=mRNA_S-dermatodea_contig9421.17453.1|Name=mRNA_S-dermatodea_contig9421.17453.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=730bp|location=Sequence derived from alignment at S-dermatodea_contig9421:725..1454+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGGGAGCGAAGGGATACATCCTTTTAGTGTGTTCGATGCGATCCACAC
TTTGTTAATTTTTTTGTCGTCTCTTCCTTGCGGGTGTTTCGAGCGTTTCG
CTACACAAACACTGGATTTTGGTACAGGAGTTTTGATGAATAGCGCTCCG
ACGGCTGCCTGGGCTTGGACTGAATCTAGGTGGCCTCCATCCGCAATGTT
CTGCCGTTTCGGACAAAAATGGCGCGGGCGAGGCCATAGATACACCTATC
AGATTTCGCTATTTTCTTTTTATGTACTTCCTCTTTGTGTACCGAACTAC
GGTATTGAAAAAAAAAGGACAAGGACACGTTCCAATCGGAACCCTTGTGC
GTGTGTGTGTGTGCGTGGGTGTGTATGTGTTTTTTTTTTGCGAAATAAAC
CTCTGGCGTCTATATCTTATGACACGTTTTCAGTGTTATTTGATATTTGT
TTTGTGTCGGGAAAGCAACAATACCCGCCTTGAGCACTGGCACCGCACGC
GCGCCACGCGTCTCCCGCGAAACAAGCACGTACGTGCGCTTTTTTCCCCC
TTCTTTTTTGTTTTGTTTTGTTTTGTTTTTTCTCGAGGTAATAATGGGAA
AGAACAAAAAAACTGCTTTGTGTATTTGATCGGAAAGGTCTCAATAATGC
GCCCCCCCCCCCCTGTTTCCGCCCGAATTTGCACGAAAGTGAGTTTTAGT
CCGAAATCAGTACTTGTAAGAGCAGGATGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9421:725..1454+

>mRNA_S-dermatodea_contig9421.17453.1 ID=mRNA_S-dermatodea_contig9421.17453.1|Name=mRNA_S-dermatodea_contig9421.17453.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at S-dermatodea_contig9421:725..1454+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTACTTCCTCTTTGTGTACCGAACTACGGTATTGAAAAAAAAAGGACA
AGGACACGTTCCAATCGGAACCCTTGTGCGTGTGTGTGTGTGCGTGGGTG
TGTATGTGTTTTTTTTTTGCGAAATAAACCTCTGGCGTCTATATCTTATG
ACACGTTTTCAGTGTTATTTGATATTTGTTTTGTGTCGGGAAAGCAACAA
TACCCGCCTTGAGCACTGGCACCGCACGCGCGCCACGCGTCTCCCGCGAA
ACAAGCACGTACGTGCGCTTTTTTCCCCCTTCTTTTTTGTTTTGTTTTGT
TTTGTTTTTTCTCGAGGTAATAATGGGAAAGAACAAAAAAACTGCTTTGT
GTATTTGATCGGAAAGGTCTCAATAATGCGCCCCCCCCCCCCTGTTTCCG
CCCGAATTTGCACGAAAGTGAGTTTTAGTCCGAAATCAGTACTTGTAAGA
GCAGGATGTATGTACTTCCTCTTTGTGTACCGAACTACGGTATTGAAAAA
AAAAGGACAAGGACACGTTCCAATCGGAACCCTTGTGCGTGTGTGTGTGT
GCGTGGGTGTGTATGTGTTTTTTTTTTGCGAAATAAACCTCTGGCGTCTA
TATCTTATGACACGTTTTCAGTGTTATTTGATATTTGTTTTGTGTCGGGA
AAGCAACAATACCCGCCTTGAGCACTGGCACCGCACGCGCGCCACGCGTC
TCCCGCGAAACAAGCACGTACGTGCGCTTTTTTCCCCCTTCTTTTTTGTT
TTGTTTTGTTTTGTTTTTTCTCGAGGTAATAATGGGAAAGAACAAAAAAA
CTGCTTTGTGTATTTGATCGGAAAGGTCTCAATAATGCGCCCCCCCCCCC
CTGTTTCCGCCCGAATTTGCACGAAAGTGAGTTTTAGTCCGAAATCAGTA
CTTGTAAGAGCAGGATGT
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