mRNA_S-dermatodea_contig9382.17423.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9382.17423.1
Unique NamemRNA_S-dermatodea_contig9382.17423.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9382.17423.1 vs. uniprot
Match: A0A6H5K9R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R7_9PHAE)

HSP 1 Score: 365 bits (936), Expect = 1.320e-119
Identity = 196/297 (65.99%), Postives = 230/297 (77.44%), Query Frame = 3 
Query:  279 FRHSSAVYIEMTDMYGIVYHANYLTYAQRAIERAFGSPAPRIHSIHDMKYRAAATIGELAIVEGNLISHDSSC---GRSRWRFQIAAA-DPSRVFVSAEATLSWPGGAAREALPPGQSPPPTSAEVAGDMQSKSAD--CRADVQLLASLPNEFADSPKTLSVTVWSDDLERGESVCNLSIRAVLNYFERIRTLSLGRGPDGELGLVRLHREGISIVVTNISDLRVDSGGVAAGDNLEVRLGAKLTRGNRAMTMYQTLWREDGTLLAHAEIALLCMDNETRKFRSVPPWVQDILTVPS 1151
            FRH S VYIEMTDMY IVYHANY+TYAQRAIE AFG+P  R+HS+  +KYRAAAT+G+   V+G L+S D S    GRSRWRF++AAA DPSRVFV+AEAT+SWPGGAA   +PPG         VA     +SA+     D +LL  LP  F D PK L V VWSDDL+ G    NLSIRAVLNYFERIRTLSLGRG DGELGL+RLHREG+S+VVT+ISDLRV+S G+ AG+ L+VRLGAKL+RGNR MTMY++LW+E+GTL+AHAEIAL CMDNETRKFR VP WVQ  + +PS
Sbjct:   81 FRHCSTVYIEMTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHSLPIVKYRAAATLGDEIAVQGTLVSCDDSSSGGGRSRWRFELAAASDPSRVFVTAEATVSWPGGAA---MPPG---------VAVIKLPRSAEPTMSDDTELLQPLPEAFTDPPKALKVVVWSDDLDVGG---NLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWKENGTLVAHAEIALFCMDNETRKFRPVPEWVQVAIMLPS 362
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BLAST of mRNA_S-dermatodea_contig9382.17423.1 vs. uniprot
Match: D8LB89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB89_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 5.110e-117
Identity = 191/287 (66.55%), Postives = 224/287 (78.05%), Query Frame = 3 
Query:  309 MTDMYGIVYHANYLTYAQRAIERAFGSPAPRIHSIHDMKYRAAATIGELAIVEGNLISHDSSC---GRSRWRFQIAAA-DPSRVFVSAEATLSWPGGAAREALPPGQSPPPTSAEVAGDMQSKSAD--CRADVQLLASLPNEFADSPKTLSVTVWSDDLERGESVCNLSIRAVLNYFERIRTLSLGRGPDGELGLVRLHREGISIVVTNISDLRVDSGGVAAGDNLEVRLGAKLTRGNRAMTMYQTLWREDGTLLAHAEIALLCMDNETRKFRSVPPWVQDILTVPS 1151
            MTDMY IVYHANY+TYAQRAIE AFG+P  R+HS+  +KYRAAAT+GE   V+G L+S D S    GRSRWRF++AAA DPSRVFV+AEAT+SW GGAA   +PPG         VA     +SA+     D +LL  LP  F DSPKTL V VWSDDL+ G    NLSIRAVLNYFERIRTLSLGRG DGELGL+RLHREG+S+VVT+ISDLRV+S G+ AG+ L+VRLGAKL+RGNR MTMY++LWRE+GTL+AHAEIAL CMDNETRKFR VP WVQ+ + +PS
Sbjct:    1 MTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHSLPIVKYRAAATLGEEITVQGTLVSCDDSSSGGGRSRWRFELAAASDPSRVFVTAEATVSWLGGAA---MPPG---------VAVSKLPRSAEPTMTDDTELLQPLPEAFTDSPKTLKVVVWSDDLDGGG---NLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWRENGTLVAHAEIALFCMDNETRKFRPVPEWVQEAIMLPS 272
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BLAST of mRNA_S-dermatodea_contig9382.17423.1 vs. uniprot
Match: A0A835YTJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.050e-22
Identity = 90/310 (29.03%), Postives = 140/310 (45.16%), Query Frame = 3 
Query:  249 GSETEDSLLPFRHSSAVYIEMTDMYGIVYHANYLTYAQRAIERAFGSPAPRIHSIHDMKYRAAATIGELAIVEGNLISHDSSCGRSRWRFQIA-AADPSRVFVSAEATLSWPGGAAREALPPGQSPPPTSAEVAGDMQSKSADCRADVQLLASLPNEFADSPKTLSVTVWSDDLERGESVCNLSIRAVLNYFERIRTLSLGRGPDGELGLVRLHREGISIVVTNISDLRVD-SGGVAAGDNLEVRLGAKLTRGNRAMTMYQTLWRE------DGTLLAHAEIALLCMDNETRKFRSVPPWVQDILTVPSN 1154
            GS++      F       +E TDM+G +YH NY+ +  RA ++  G     I  +  ++YR AA +G+  ++ G   S D+      W+  +  A +  RVFV+A   L                               +A   A    LA        S +   +  + D+L    +   LS  +V+NY ER RTLSLG     E GL RLH++G  IV++ ISDLR+D +  +A G  LEV       R  R +++ Q ++ +         L+AHA + LLC+D  T+K  + P W+ + L V S+
Sbjct:   40 GSDSASEGRAFAIEQLCMVEDTDMFGHMYHGNYIKWLARASQKCLGHDTVLI-GVDALRYRNAAVLGDNMVISGTF-SEDAQA----WQCSVVDARNEKRVFVTASVLLG------------------------------TASSDAGASALAGKVESVPQSAQYFDMVAYGDELGADGA---LSPSSVINYMERTRTLSLG---PPEEGLYRLHKQGTDIVISRISDLRLDHTVRIAPGAELEVVNSGSANR--RTVSVRQRVYVKAPDEVSGRRLIAHATVELLCIDGATKKLSAFPDWILERLHVISS 305
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9382.17423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9R7_9PHAE1.320e-11965.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB89_ECTSI5.110e-11766.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTJ2_9STRA3.050e-2229.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9382contigS-dermatodea_contig9382:4822..7000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog227086.JGI_V11_78812
EggNOG OGs2CZXS@1,2SC25@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHotDog domain
Ec32 orthologEc-27_004780.1
Exons3
Model size1546
Cds size1107
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9382.17423.1prot_S-dermatodea_contig9382.17423.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9382 4884..6623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.3929965-UTR-S-dermatodea_contig9382:4821..48831622925404.3929965-UTR-S-dermatodea_contig9382:4821..4883Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9382 4822..4883 +
1694079910.739101-UTR-S-dermatodea_contig9382:4821..48831694079910.739101-UTR-S-dermatodea_contig9382:4821..4883Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9382 4822..4883 +
1622925404.4453356-UTR-S-dermatodea_contig9382:6623..70001622925404.4453356-UTR-S-dermatodea_contig9382:6623..7000Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9382 6624..7000 +
1694079910.7833045-UTR-S-dermatodea_contig9382:6623..70001694079910.7833045-UTR-S-dermatodea_contig9382:6623..7000Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9382 6624..7000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.4063148-CDS-S-dermatodea_contig9382:4883..51401622925404.4063148-CDS-S-dermatodea_contig9382:4883..5140Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9382 4884..5140 +
1694079910.7573602-CDS-S-dermatodea_contig9382:4883..51401694079910.7573602-CDS-S-dermatodea_contig9382:4883..5140Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9382 4884..5140 +
1622925404.4213555-CDS-S-dermatodea_contig9382:5388..59771622925404.4213555-CDS-S-dermatodea_contig9382:5388..5977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9382 5389..5977 +
1694079910.7666523-CDS-S-dermatodea_contig9382:5388..59771694079910.7666523-CDS-S-dermatodea_contig9382:5388..5977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9382 5389..5977 +
1622925404.4334261-CDS-S-dermatodea_contig9382:6362..66231622925404.4334261-CDS-S-dermatodea_contig9382:6362..6623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9382 6363..6623 +
1694079910.775272-CDS-S-dermatodea_contig9382:6362..66231694079910.775272-CDS-S-dermatodea_contig9382:6362..6623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9382 6363..6623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9382.17423.1

>prot_S-dermatodea_contig9382.17423.1 ID=prot_S-dermatodea_contig9382.17423.1|Name=mRNA_S-dermatodea_contig9382.17423.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=369bp
MRKNWLRASSWVLLGELLVVNGFVQSVQTSSRPISRTNPRQQQALATTDV
PVAQVSEAPRQAGSETEDSLLPFRHSSAVYIEMTDMYGIVYHANYLTYAQ
RAIERAFGSPAPRIHSIHDMKYRAAATIGELAIVEGNLISHDSSCGRSRW
RFQIAAADPSRVFVSAEATLSWPGGAAREALPPGQSPPPTSAEVAGDMQS
KSADCRADVQLLASLPNEFADSPKTLSVTVWSDDLERGESVCNLSIRAVL
NYFERIRTLSLGRGPDGELGLVRLHREGISIVVTNISDLRVDSGGVAAGD
NLEVRLGAKLTRGNRAMTMYQTLWREDGTLLAHAEIALLCMDNETRKFRS
VPPWVQDILTVPSNAAAD*
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mRNA from alignment at S-dermatodea_contig9382:4822..7000+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9382.17423.1 ID=mRNA_S-dermatodea_contig9382.17423.1|Name=mRNA_S-dermatodea_contig9382.17423.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2179bp|location=Sequence derived from alignment at S-dermatodea_contig9382:4822..7000+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGGCAGTGAGTGCGTTGGGGGTGTGCTATCATCAGCTGGGTGAGCCCG
TCTGGAGAGTCAATGCGGAAGAATTGGCTACGCGCTTCTTCGTGGGTGCT
GCTTGGCGAGCTGCTGGTGGTCAACGGCTTCGTGCAAAGCGTGCAAACTT
CATCGAGACCAATTAGCAGAACAAACCCTAGGCAGCAGCAGGCACTAGCA
ACGACCGATGTTCCAGTCGCACAGGTCTCCGAGGCGCCCAGGCAGGCTGG
TAGCGAGACCGAGGACTCGCTGTTGCCGTTCCGTCACAGCAGCGCAGTTT
ACATCGAAATGACAGACATGTGAGAATCGGCTGAAATTGTATGACAATGC
CCGTCACTTCATTTCATCTGCATCCTTGCGCGCACGTTATGTTGCGCGCA
CGTTATATTTGAACCAACTGGTATCTCGTTGCAACTTGCAACCCATCAGA
TAACGTTTACATACCAAGCAACAACTGATACAAATCCATCTGTCGGACGT
CGCCCTCTTCCCTCCTATGCTACATTGGCTCATCGTGCTGTCCTTGTCTC
CGCATTACCCCCGGCAGGTATGGTATCGTCTACCACGCGAACTACCTCAC
GTACGCGCAACGAGCGATCGAGCGCGCCTTTGGCTCCCCCGCCCCCCGCA
TCCACTCCATCCACGACATGAAGTACCGCGCCGCGGCCACGATCGGCGAG
CTGGCGATCGTGGAAGGAAACCTTATCTCCCACGACTCCTCCTGCGGACG
CTCTCGCTGGCGCTTCCAAATAGCCGCCGCTGATCCATCGCGGGTGTTCG
TAAGCGCGGAGGCCACCCTTTCCTGGCCAGGAGGGGCGGCGAGGGAAGCG
CTGCCTCCAGGTCAAAGCCCCCCGCCTACTAGCGCGGAGGTGGCGGGAGA
TATGCAGAGCAAATCGGCTGACTGCCGTGCCGACGTGCAGCTCCTGGCGT
CCTTGCCCAACGAGTTTGCAGATTCCCCCAAGACCCTGAGCGTTACTGTG
TGGAGCGACGACCTGGAGCGGGGAGAAAGCGTCTGCAATCTTTCCATTCG
GGCGGTGCTCAACTATTTCGAGAGAATACGGACGCTCAGCCTGGGCCGAG
GCCCCGACGGCGAGCTCGGGCTTGTGCGGCTGCACCGGGAAGGGATTTCA
ATCGTGGTGAGGGATTTGGGGGCTGCCTTCCGTTGCGTGCTTGGTGTGGC
TCTTGGGTAGCGACGTGGAAATGCTGATATGCCGTTCGTTTAGGCGTCGG
TGCGGCGCCCGGCTACAAGTACTGTTTTTCTTTTTTCCCAAGGCGGAAGA
TGCGGGACATGGTGCGTTTGTCAGGCGCAGCGGAGCGTTACAGTTTCGGT
TCCTGGTTTCCATCACGACGAACAAGCCTCAAACTCAACGCGTTTTCGTC
GTGACATATGAAAATTGAGAGTCAACCATGCCCCCCCTTGTACATTTTTG
GATTACTTGTTTGGCACGAGCGCGGAGATGTGGTTTGGAATGGACACTCT
GATAGCGTCTTCGCTGCTCGTTTGGGTTTTGAAATCCTCAGGTGACCAAC
ATATCGGATCTGCGTGTGGACAGCGGGGGGGTAGCGGCTGGAGATAACCT
AGAGGTGCGGTTGGGAGCAAAGCTGACCAGGGGCAACAGGGCCATGACCA
TGTACCAGACGCTTTGGAGGGAGGACGGGACGCTCTTAGCGCACGCAGAG
ATCGCGCTCCTTTGCATGGACAACGAGACTCGAAAGTTTCGATCGGTGCC
GCCGTGGGTGCAAGACATCTTGACGGTGCCTTCCAACGCTGCCGCAGACT
GATGAAAAAATACGATCCGGCGTTTTTATCATGGCCATGGCCGCTATTCG
TGGATGCACTCTCGGTGGGAACATGCCTATCCTTGCGTTCACGTATTGCA
GCATGCAGGCAGGCATCAACTCGGTGCTCACGTTCTACTGGTTGCACGTG
GGGACACTCGAAGCCAAGTTGCTTTCATCGAGACGCTCTGCACATCGAGA
GCAAATAAATCAACGCCCGATGGGTGCAATAAACGGCACGCCGTTCATCA
CGTCGACCACGCAAAATCTCCGCGGAGCTCGCAACCTCTCTTTGAGCAAA
AACAAACTACGAAAACCCTCCAGCGCAGAGCAGATTGCGTCGTCCGTACA
AGTCGATAAGTAAAAGTTTCAATTATATG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9382:4822..7000+

>mRNA_S-dermatodea_contig9382.17423.1 ID=mRNA_S-dermatodea_contig9382.17423.1|Name=mRNA_S-dermatodea_contig9382.17423.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2214bp|location=Sequence derived from alignment at S-dermatodea_contig9382:4822..7000+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGGAAGAATTGGCTACGCGCTTCTTCGTGGGTGCTGCTTGGCGAGCT
GCTGGTGGTCAACGGCTTCGTGCAAAGCGTGCAAACTTCATCGAGACCAA
TTAGCAGAACAAACCCTAGGCAGCAGCAGGCACTAGCAACGACCGATGTT
CCAGTCGCACAGGTCTCCGAGGCGCCCAGGCAGGCTGGTAGCGAGACCGA
GGACTCGCTGTTGCCGTTCCGTCACAGCAGCGCAGTTTACATCGAAATGA
CAGACATATGCGGAAGAATTGGCTACGCGCTTCTTCGTGGGTGCTGCTTG
GCGAGCTGCTGGTGGTCAACGGCTTCGTGCAAAGCGTGCAAACTTCATCG
AGACCAATTAGCAGAACAAACCCTAGGCAGCAGCAGGCACTAGCAACGAC
CGATGTTCCAGTCGCACAGGTCTCCGAGGCGCCCAGGCAGGCTGGTAGCG
AGACCGAGGACTCGCTGTTGCCGTTCCGTCACAGCAGCGCAGTTTACATC
GAAATGACAGACATGTATGGTATCGTCTACCACGCGAACTACCTCACGTA
CGCGCAACGAGCGATCGAGCGCGCCTTTGGCTCCCCCGCCCCCCGCATCC
ACTCCATCCACGACATGAAGTACCGCGCCGCGGCCACGATCGGCGAGCTG
GCGATCGTGGAAGGAAACCTTATCTCCCACGACTCCTCCTGCGGACGCTC
TCGCTGGCGCTTCCAAATAGCCGCCGCTGATCCATCGCGGGTGTTCGTAA
GCGCGGAGGCCACCCTTTCCTGGCCAGGAGGGGCGGCGAGGGAAGCGCTG
CCTCCAGGTCAAAGCCCCCCGCCTACTAGCGCGGAGGTGGCGGGAGATAT
GCAGAGCAAATCGGCTGACTGCCGTGCCGACGTGCAGCTCCTGGCGTCCT
TGCCCAACGAGTTTGCAGATTCCCCCAAGACCCTGAGCGTTACTGTGTGG
AGCGACGACCTGGAGCGGGGAGAAAGCGTCTGCAATCTTTCCATTCGGGC
GGTGCTCAACTATTTCGAGAGAATACGGACGCTCAGCCTGGGCCGAGGCC
CCGACGGCGAGCTCGGGCTTGTGCGGCTGCACCGGGAAGGGATTTCAATC
GTGGTATGGTATCGTCTACCACGCGAACTACCTCACGTACGCGCAACGAG
CGATCGAGCGCGCCTTTGGCTCCCCCGCCCCCCGCATCCACTCCATCCAC
GACATGAAGTACCGCGCCGCGGCCACGATCGGCGAGCTGGCGATCGTGGA
AGGAAACCTTATCTCCCACGACTCCTCCTGCGGACGCTCTCGCTGGCGCT
TCCAAATAGCCGCCGCTGATCCATCGCGGGTGTTCGTAAGCGCGGAGGCC
ACCCTTTCCTGGCCAGGAGGGGCGGCGAGGGAAGCGCTGCCTCCAGGTCA
AAGCCCCCCGCCTACTAGCGCGGAGGTGGCGGGAGATATGCAGAGCAAAT
CGGCTGACTGCCGTGCCGACGTGCAGCTCCTGGCGTCCTTGCCCAACGAG
TTTGCAGATTCCCCCAAGACCCTGAGCGTTACTGTGTGGAGCGACGACCT
GGAGCGGGGAGAAAGCGTCTGCAATCTTTCCATTCGGGCGGTGCTCAACT
ATTTCGAGAGAATACGGACGCTCAGCCTGGGCCGAGGCCCCGACGGCGAG
CTCGGGCTTGTGCGGCTGCACCGGGAAGGGATTTCAATCGTGGTGACCAA
CATATCGGATCTGCGTGTGGACAGCGGGGGGGTAGCGGCTGGAGATAACC
TAGAGGTGCGGTTGGGAGCAAAGCTGACCAGGGGCAACAGGGCCATGACC
ATGTACCAGACGCTTTGGAGGGAGGACGGGACGCTCTTAGCGCACGCAGA
GATCGCGCTCCTTTGCATGGACAACGAGACTCGAAAGTTTCGATCGGTGC
CGCCGTGGGTGCAAGACATCTTGACGGTGCCTTCCAACGCTGCCGCAGAC
TGAGTGACCAACATATCGGATCTGCGTGTGGACAGCGGGGGGGTAGCGGC
TGGAGATAACCTAGAGGTGCGGTTGGGAGCAAAGCTGACCAGGGGCAACA
GGGCCATGACCATGTACCAGACGCTTTGGAGGGAGGACGGGACGCTCTTA
GCGCACGCAGAGATCGCGCTCCTTTGCATGGACAACGAGACTCGAAAGTT
TCGATCGGTGCCGCCGTGGGTGCAAGACATCTTGACGGTGCCTTCCAACG
CTGCCGCAGACTGA
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