mRNA_S-dermatodea_contig93580.17402.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93580.17402.1
Unique NamemRNA_S-dermatodea_contig93580.17402.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A8F0F7A6_9PHAE (Ribosomal protein S16 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A6_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.280e-37
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1
Query:    1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
            MLKIRFKR GRKKQPFYRIV+M+ KTKRDG V+EELGFYNPLNK FQINR RTIIRLDNGA+PTEVLKNL  +S IF
Sbjct:    1 MLKIRFKRCGRKKQPFYRIVLMDNKTKRDGNVVEELGFYNPLNKTFQINRVRTIIRLDNGAQPTEVLKNLFRKSNIF 77          
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A1I9LW03_9PHAE (30S ribosomal protein S16, chloroplastic n=2 Tax=Chordariaceae TaxID=66220 RepID=A0A1I9LW03_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.110e-33
Identity = 59/77 (76.62%), Postives = 68/77 (88.31%), Query Frame = 1
Query:    1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
            MLKIRFKR GRKKQPFYRIVVM+ KTKRDGK +EELGFY+P+NK FQINR RTIIRL NG +PTEV+KNLL+++  F
Sbjct:    1 MLKIRFKRGGRKKQPFYRIVVMDVKTKRDGKALEELGFYDPMNKTFQINRERTIIRLANGVQPTEVVKNLLIRAFKF 77          
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: D1J702_ECTSI (30S ribosomal protein S16, chloroplastic n=32 Tax=Phaeophyceae TaxID=2870 RepID=D1J702_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.430e-31
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
            MLKIRFKR GRKKQPFYRIVVM+ KTKRDGKV+EELGFY+P+ K F INR RTI RL NG +PTEV+KNLL +S  F
Sbjct:    1 MLKIRFKRGGRKKQPFYRIVVMDVKTKRDGKVLEELGFYDPIRKTFHINRERTIKRLANGVQPTEVVKNLLRRSSKF 77          
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A8F0FAS3_9PHAE (Ribosomal protein S16 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAS3_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.180e-30
Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
            MLKIRFK  GRKKQPFYRIVVM+ +TKRDGKV+EELGFYNP+NK   INR RTI RL++GA+PTEV+KNLL ++  F
Sbjct:    1 MLKIRFKLCGRKKQPFYRIVVMDVRTKRDGKVLEELGFYNPMNKTLHINRERTISRLNHGAQPTEVVKNLLRKTPGF 77          
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A141BSI6_9PHAE (30S ribosomal protein S16, chloroplastic n=16 Tax=Fucales TaxID=3009 RepID=A0A141BSI6_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.370e-30
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
            MLKIRFKR GRKKQPFY+IVVM+ +TKRDGK +EELGFYNP+ K   IN  RTI RL NG +PTEV+KNLL +S IF
Sbjct:    1 MLKIRFKRTGRKKQPFYKIVVMDVRTKRDGKALEELGFYNPITKTLNINCERTISRLKNGVQPTEVVKNLLRKSSIF 77          
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A2I4Q2M7_9PHAE (30S ribosomal protein S16, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2M7_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.370e-30
Identity = 56/77 (72.73%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
            MLKIRFKR GRKK PFYRIVV+N +TKRDGKVIEELG YNPL K  +IN  RTIIRL++GA+PTEV+KNL  +S +F
Sbjct:    1 MLKIRFKRGGRKKHPFYRIVVINNRTKRDGKVIEELGSYNPLTKIIKINLVRTIIRLEDGAQPTEVVKNLFRKSSLF 77          
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A8E5XRF9_9PHAE (30S ribosomal protein S16, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRF9_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.930e-29
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
            MLKIR KR+GRKK+PFYRIV+M+  TKRDGK IEELGFYNPLNK F INR R I+R+  GA+PT+++ NLL +S+ F
Sbjct:    1 MLKIRLKRFGRKKKPFYRIVLMDASTKRDGKAIEELGFYNPLNKIFYINRERIIMRIKTGAQPTQIVSNLLKKSKFF 77          
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A7S6UA28_9STRA (30S ribosomal protein S16, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA28_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.010e-27
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQI 228
            MLK+R KR GRKK+PFYRIVVMN KTKRDGK IE+LG+YNP+ K F +NR RT+ RL+ G  PT+V+KNLL ++ I
Sbjct:    1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKADI 76          
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: B7T1T4_VAULI (30S ribosomal protein S16, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1T4_VAULI)

HSP 1 Score: 97.4 bits (241), Expect = 6.080e-25
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
            MLK+R KR GRKKQPFY+IVVMN  ++RDG  IEELGFYNPLNK F+IN+ RTI RL  G +PT  L +LL +  I 
Sbjct:    1 MLKLRLKRCGRKKQPFYKIVVMNANSRRDGFAIEELGFYNPLNKTFKINKGRTIYRLKQGVQPTATLIDLLKKVNIL 77          
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A8E5BGR9_9PHAE (Ribosomal protein S16 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BGR9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.150e-24
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
            MLK+R KR GRK QPF++I++M+ KTKRDGK IEELGFYNP+ K    N  RTI  L+NG +PTEV+K+LL +S  F
Sbjct:    1 MLKMRLKRCGRKNQPFFKILIMDVKTKRDGKAIEELGFYNPIMKIISFNHKRTIYWLNNGVQPTEVIKDLLNKSPFF 77          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7A6_9PHAE2.280e-3783.12Ribosomal protein S16 n=1 Tax=Protohalopteris sp. ... [more]
A0A1I9LW03_9PHAE2.110e-3376.6230S ribosomal protein S16, chloroplastic n=2 Tax=C... [more]
D1J702_ECTSI1.430e-3175.3230S ribosomal protein S16, chloroplastic n=32 Tax=... [more]
A0A8F0FAS3_9PHAE1.180e-3072.73Ribosomal protein S16 n=1 Tax=Desmarestia aculeata... [more]
A0A141BSI6_9PHAE3.370e-3071.4330S ribosomal protein S16, chloroplastic n=16 Tax=... [more]
A0A2I4Q2M7_9PHAE3.370e-3072.7330S ribosomal protein S16, chloroplastic n=1 Tax=D... [more]
A0A8E5XRF9_9PHAE2.930e-2967.5330S ribosomal protein S16, chloroplastic n=1 Tax=I... [more]
A0A7S6UA28_9STRA1.010e-2765.7930S ribosomal protein S16, chloroplastic n=1 Tax=S... [more]
B7T1T4_VAULI6.080e-2563.6430S ribosomal protein S16, chloroplastic n=1 Tax=V... [more]
A0A8E5BGR9_9PHAE2.150e-2461.04Ribosomal protein S16 n=1 Tax=Phaeophyceae sp. Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93580contigS-dermatodea_contig93580:303..536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue8.3e-24
Seed eggNOG ortholog2880.D1J702
Preferred namerps16
KEGG koko:K02959
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal protein s16
EggNOG OGsCOG0228@1,KOG3419@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925402.876529-CDS-S-dermatodea_contig93580:302..5361622925402.876529-CDS-S-dermatodea_contig93580:302..536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93580 303..536 -
1694079909.6921654-CDS-S-dermatodea_contig93580:302..5361694079909.6921654-CDS-S-dermatodea_contig93580:302..536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93580 303..536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93580.17402.1prot_S-dermatodea_contig93580.17402.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93580 303..536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93580.17402.1

>prot_S-dermatodea_contig93580.17402.1 ID=prot_S-dermatodea_contig93580.17402.1|Name=mRNA_S-dermatodea_contig93580.17402.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=78bp
MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINR
ARTIIRLDNGAKPTEVLKNLLLQSQIF*
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mRNA from alignment at S-dermatodea_contig93580:303..536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93580.17402.1 ID=mRNA_S-dermatodea_contig93580.17402.1|Name=mRNA_S-dermatodea_contig93580.17402.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at S-dermatodea_contig93580:303..536- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTTAAAATAAGATTTAAACGATATGGTCGAAAAAAACAACCTTTTTA CAGAATTGTTGTAATGAATACAAAAACAAAACGTGACGGAAAAGTTATTG AAGAATTAGGGTTTTATAATCCTCTAAATAAAAATTTTCAAATTAATCGC GCACGAACAATTATTAGATTAGACAATGGGGCTAAACCTACTGAAGTTTT GAAAAATTTGTTACTACAATCACAAATATTCTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig93580:303..536-

>mRNA_S-dermatodea_contig93580.17402.1 ID=mRNA_S-dermatodea_contig93580.17402.1|Name=mRNA_S-dermatodea_contig93580.17402.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig93580:303..536- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTTAAAATAAGATTTAAACGATATGGTCGAAAAAAACAACCTTTTTA
CAGAATTGTTGTAATGAATACAAAAACAAAACGTGACGGAAAAGTTATTG
AAGAATTAGGGTTTTATAATCCTCTAAATAAAAATTTTCAAATTAATCGC
GCACGAACAATTATTAGATTAGACAATGGGGCTAAACCTACTGAAGTTTT
GAAAAATTTGTTACTACAATCACAAATATTCTAAATGCTTAAAATAAGAT
TTAAACGATATGGTCGAAAAAAACAACCTTTTTACAGAATTGTTGTAATG
AATACAAAAACAAAACGTGACGGAAAAGTTATTGAAGAATTAGGGTTTTA
TAATCCTCTAAATAAAAATTTTCAAATTAATCGCGCACGAACAATTATTA
GATTAGACAATGGGGCTAAACCTACTGAAGTTTTGAAAAATTTGTTACTA
CAATCACAAATATTCTAA
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