mRNA_S-dermatodea_contig93580.17402.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A8F0F7A6_9PHAE (Ribosomal protein S16 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A6_9PHAE) HSP 1 Score: 128 bits (322), Expect = 2.280e-37 Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1
Query: 1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
MLKIRFKR GRKKQPFYRIV+M+ KTKRDG V+EELGFYNPLNK FQINR RTIIRLDNGA+PTEVLKNL +S IF
Sbjct: 1 MLKIRFKRCGRKKQPFYRIVLMDNKTKRDGNVVEELGFYNPLNKTFQINRVRTIIRLDNGAQPTEVLKNLFRKSNIF 77
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A1I9LW03_9PHAE (30S ribosomal protein S16, chloroplastic n=2 Tax=Chordariaceae TaxID=66220 RepID=A0A1I9LW03_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.110e-33 Identity = 59/77 (76.62%), Postives = 68/77 (88.31%), Query Frame = 1
Query: 1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
MLKIRFKR GRKKQPFYRIVVM+ KTKRDGK +EELGFY+P+NK FQINR RTIIRL NG +PTEV+KNLL+++ F
Sbjct: 1 MLKIRFKRGGRKKQPFYRIVVMDVKTKRDGKALEELGFYDPMNKTFQINRERTIIRLANGVQPTEVVKNLLIRAFKF 77
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: D1J702_ECTSI (30S ribosomal protein S16, chloroplastic n=32 Tax=Phaeophyceae TaxID=2870 RepID=D1J702_ECTSI) HSP 1 Score: 114 bits (284), Expect = 1.430e-31 Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 1
Query: 1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
MLKIRFKR GRKKQPFYRIVVM+ KTKRDGKV+EELGFY+P+ K F INR RTI RL NG +PTEV+KNLL +S F
Sbjct: 1 MLKIRFKRGGRKKQPFYRIVVMDVKTKRDGKVLEELGFYDPIRKTFHINRERTIKRLANGVQPTEVVKNLLRRSSKF 77
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A8F0FAS3_9PHAE (Ribosomal protein S16 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAS3_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.180e-30 Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 1
Query: 1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
MLKIRFK GRKKQPFYRIVVM+ +TKRDGKV+EELGFYNP+NK INR RTI RL++GA+PTEV+KNLL ++ F
Sbjct: 1 MLKIRFKLCGRKKQPFYRIVVMDVRTKRDGKVLEELGFYNPMNKTLHINRERTISRLNHGAQPTEVVKNLLRKTPGF 77
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A141BSI6_9PHAE (30S ribosomal protein S16, chloroplastic n=16 Tax=Fucales TaxID=3009 RepID=A0A141BSI6_9PHAE) HSP 1 Score: 110 bits (275), Expect = 3.370e-30 Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 1
Query: 1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
MLKIRFKR GRKKQPFY+IVVM+ +TKRDGK +EELGFYNP+ K IN RTI RL NG +PTEV+KNLL +S IF
Sbjct: 1 MLKIRFKRTGRKKQPFYKIVVMDVRTKRDGKALEELGFYNPITKTLNINCERTISRLKNGVQPTEVVKNLLRKSSIF 77
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A2I4Q2M7_9PHAE (30S ribosomal protein S16, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2M7_9PHAE) HSP 1 Score: 110 bits (275), Expect = 3.370e-30 Identity = 56/77 (72.73%), Postives = 65/77 (84.42%), Query Frame = 1
Query: 1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
MLKIRFKR GRKK PFYRIVV+N +TKRDGKVIEELG YNPL K +IN RTIIRL++GA+PTEV+KNL +S +F
Sbjct: 1 MLKIRFKRGGRKKHPFYRIVVINNRTKRDGKVIEELGSYNPLTKIIKINLVRTIIRLEDGAQPTEVVKNLFRKSSLF 77
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A8E5XRF9_9PHAE (30S ribosomal protein S16, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRF9_9PHAE) HSP 1 Score: 108 bits (269), Expect = 2.930e-29 Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 1
Query: 1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
MLKIR KR+GRKK+PFYRIV+M+ TKRDGK IEELGFYNPLNK F INR R I+R+ GA+PT+++ NLL +S+ F
Sbjct: 1 MLKIRLKRFGRKKKPFYRIVLMDASTKRDGKAIEELGFYNPLNKIFYINRERIIMRIKTGAQPTQIVSNLLKKSKFF 77
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A7S6UA28_9STRA (30S ribosomal protein S16, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA28_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.010e-27 Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 1
Query: 1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQI 228
MLK+R KR GRKK+PFYRIVVMN KTKRDGK IE+LG+YNP+ K F +NR RT+ RL+ G PT+V+KNLL ++ I
Sbjct: 1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKADI 76
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: B7T1T4_VAULI (30S ribosomal protein S16, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1T4_VAULI) HSP 1 Score: 97.4 bits (241), Expect = 6.080e-25 Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
MLK+R KR GRKKQPFY+IVVMN ++RDG IEELGFYNPLNK F+IN+ RTI RL G +PT L +LL + I
Sbjct: 1 MLKLRLKRCGRKKQPFYKIVVMNANSRRDGFAIEELGFYNPLNKTFKINKGRTIYRLKQGVQPTATLIDLLKKVNIL 77
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Match: A0A8E5BGR9_9PHAE (Ribosomal protein S16 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BGR9_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 2.150e-24 Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 1 MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRARTIIRLDNGAKPTEVLKNLLLQSQIF 231
MLK+R KR GRK QPF++I++M+ KTKRDGK IEELGFYNP+ K N RTI L+NG +PTEV+K+LL +S F
Sbjct: 1 MLKMRLKRCGRKNQPFFKILIMDVKTKRDGKAIEELGFYNPIMKIISFNHKRTIYWLNNGVQPTEVIKDLLNKSPFF 77 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93580.17402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig93580.17402.1 >prot_S-dermatodea_contig93580.17402.1 ID=prot_S-dermatodea_contig93580.17402.1|Name=mRNA_S-dermatodea_contig93580.17402.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=78bp MLKIRFKRYGRKKQPFYRIVVMNTKTKRDGKVIEELGFYNPLNKNFQINRback to top mRNA from alignment at S-dermatodea_contig93580:303..536- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig93580.17402.1 ID=mRNA_S-dermatodea_contig93580.17402.1|Name=mRNA_S-dermatodea_contig93580.17402.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at S-dermatodea_contig93580:303..536- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig93580:303..536- >mRNA_S-dermatodea_contig93580.17402.1 ID=mRNA_S-dermatodea_contig93580.17402.1|Name=mRNA_S-dermatodea_contig93580.17402.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig93580:303..536- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |