mRNA_S-dermatodea_contig9318.17369.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9318.17369.1
Unique NamemRNA_S-dermatodea_contig9318.17369.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9318.17369.1 vs. uniprot
Match: A0A6H5JL66_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL66_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.610e-16
Identity = 33/57 (57.89%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:  127 PAKFSEAIDAIGMGPFQRRLAVMCGMGWVIDALEIVVISFVLEDVAISFNLGSVGKG 297
            P+ FSEAID +G+GPFQ+RL ++CG+GW +D++E++V++F LE +A SF L SVGKG
Sbjct:   53 PSTFSEAIDRVGLGPFQKRLVIICGLGWAVDSMEVLVLAFALEAIATSFELSSVGKG 109
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BLAST of mRNA_S-dermatodea_contig9318.17369.1 vs. uniprot
Match: A0A2N1S9R7_9SPIR (MFS transporter n=1 Tax=Spirochaetae bacterium HGW-Spirochaetae-3 TaxID=2013835 RepID=A0A2N1S9R7_9SPIR)

HSP 1 Score: 58.9 bits (141), Expect = 5.210e-8
Identity = 24/54 (44.44%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  136 FSEAIDAIGMGPFQRRLAVMCGMGWVIDALEIVVISFVLEDVAISFNLGSVGKG 297
            F EA++ +G G FQRRL V+CG+GW  DA+E++++SF L  ++  ++L +  KG
Sbjct:    6 FDEALEKVGYGRFQRRLLVICGLGWAADAMEVLLVSFALPAMSAEWSLSAAQKG 59
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BLAST of mRNA_S-dermatodea_contig9318.17369.1 vs. uniprot
Match: A0A3D1JEE6_9CHLR (Arabinose efflux permease n=2 Tax=Anaerolinea thermolimosa TaxID=229919 RepID=A0A3D1JEE6_9CHLR)

HSP 1 Score: 57.0 bits (136), Expect = 2.480e-7
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  136 FSEAIDAIGMGPFQRRLAVMCGMGWVIDALEIVVISFVLEDVAISFNLGSVGKG 297
            F EAI+  G+G FQR+L ++CG+GW  DA+E+++ISF L  +   + L +  KG
Sbjct:    7 FDEAIEHAGLGRFQRKLMIICGLGWAADAMEVLLISFALPAIGEEWGLSNAQKG 60
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BLAST of mRNA_S-dermatodea_contig9318.17369.1 vs. uniprot
Match: A0A3N5RFR2_9CHLR (MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5RFR2_9CHLR)

HSP 1 Score: 56.6 bits (135), Expect = 3.390e-7
Identity = 23/54 (42.59%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  136 FSEAIDAIGMGPFQRRLAVMCGMGWVIDALEIVVISFVLEDVAISFNLGSVGKG 297
            + +AI+ +G G FQ++L V+CG+GW  DA+E+++I+FVL  +   +NL +  KG
Sbjct:   10 YDQAIEQVGFGRFQKKLMVICGLGWAADAMEVLLIAFVLPVIGEEWNLTNTQKG 63
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BLAST of mRNA_S-dermatodea_contig9318.17369.1 vs. uniprot
Match: A0A3N5WNN0_9CHLR (MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5WNN0_9CHLR)

HSP 1 Score: 55.1 bits (131), Expect = 1.180e-6
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  136 FSEAIDAIGMGPFQRRLAVMCGMGWVIDALEIVVISFVLEDVAISFNLGSVGKG 297
            F +AI   G G FQ++L V+CG+GW  DA+E+++ISF L  ++  +NL +  +G
Sbjct:    8 FDDAIQHAGFGRFQKKLRVICGLGWAADAMEVLLISFALPSISQEWNLTNAQRG 61
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BLAST of mRNA_S-dermatodea_contig9318.17369.1 vs. uniprot
Match: A0A6H5JUA1_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUA1_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.190e-6
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:  190 VMCGMGWVIDALEIVVISFVLEDVAISFNLGSVGKG 297
            V+C  GWVIDA+EI+V++FVLED+A +F LGSVGKG
Sbjct:   12 VICCNGWVIDAMEILVVAFVLEDIATTFELGSVGKG 47
[Close]
BLAST of mRNA_S-dermatodea_contig9318.17369.1 vs. uniprot
Match: A0A7C5JVG9_9CHLR (MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C5JVG9_9CHLR)

HSP 1 Score: 54.7 bits (130), Expect = 1.610e-6
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:  136 FSEAIDAIGMGPFQRRLAVMCGMGWVIDALEIVVISFVLEDVAISFNLGSVGKG 297
            F EAI+ +G G FQR+L  +CG GW  DA+E+++ISFV+  V   + L +   G
Sbjct:    7 FDEAIERVGFGRFQRKLLWICGAGWAADAMEVIIISFVIPAVIREWGLSAAQAG 60
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BLAST of mRNA_S-dermatodea_contig9318.17369.1 vs. uniprot
Match: C1D1E7_DEIDV (Putative Major Facilitator Superfamily (MFS_1) transporter n=3 Tax=Deinococcus TaxID=1298 RepID=C1D1E7_DEIDV)

HSP 1 Score: 54.3 bits (129), Expect = 2.210e-6
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:  112 TPALSPAKFSEAIDAIGMGPFQRRLAVMCGMGWVIDALEIVVISFVLEDVAISFNL 279
            TP         AID +G+GPFQ RL ++CG+ W  DA+E++++ F L  +A SF L
Sbjct:    5 TPPAGAMSVDAAIDGLGLGPFQWRLLLICGLTWAADAMEVLLMGFALPGIAESFGL 60
[Close]
BLAST of mRNA_S-dermatodea_contig9318.17369.1 vs. uniprot
Match: A0A7X1NUH3_9DEIO (MFS transporter n=2 Tax=Deinococcus TaxID=1298 RepID=A0A7X1NUH3_9DEIO)

HSP 1 Score: 53.5 bits (127), Expect = 4.120e-6
Identity = 21/56 (37.50%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:  112 TPALSPAKFSEAIDAIGMGPFQRRLAVMCGMGWVIDALEIVVISFVLEDVAISFNL 279
            T +  P    +A+D +G+GPFQ RL  +CG+ W  DA+E++++ F L  ++ +F L
Sbjct:    2 TSSARPISLDDAVDRLGLGPFQWRLLAICGLTWAADAMEVLLMGFALPGISAAFGL 57
[Close]
BLAST of mRNA_S-dermatodea_contig9318.17369.1 vs. uniprot
Match: A0A7C3NTT0_9DELT (MFS transporter n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C3NTT0_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 7.640e-6
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  136 FSEAIDAIGMGPFQRRLAVMCGMGWVIDALEIVVISFVLEDVAISFNL 279
            F +AI  +G G FQ +L V+CG+GW  DA+E+++ISFV+  V   +NL
Sbjct:    3 FEDAIGEVGFGRFQIKLMVLCGLGWAADAMEVLLISFVIPAVRKEWNL 50
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9318.17369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JL66_9PHAE7.610e-1657.89MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2N1S9R7_9SPIR5.210e-844.44MFS transporter n=1 Tax=Spirochaetae bacterium HGW... [more]
A0A3D1JEE6_9CHLR2.480e-744.44Arabinose efflux permease n=2 Tax=Anaerolinea ther... [more]
A0A3N5RFR2_9CHLR3.390e-742.59MFS transporter n=1 Tax=Chloroflexi bacterium TaxI... [more]
A0A3N5WNN0_9CHLR1.180e-642.59MFS transporter n=1 Tax=Chloroflexi bacterium TaxI... [more]
A0A6H5JUA1_9PHAE1.190e-669.44MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7C5JVG9_9CHLR1.610e-644.44MFS transporter n=1 Tax=Chloroflexi bacterium TaxI... [more]
C1D1E7_DEIDV2.210e-642.86Putative Major Facilitator Superfamily (MFS_1) tra... [more]
A0A7X1NUH3_9DEIO4.120e-637.50MFS transporter n=2 Tax=Deinococcus TaxID=1298 Rep... [more]
A0A7C3NTT0_9DELT7.640e-647.92MFS transporter n=1 Tax=Deltaproteobacteria bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9318contigS-dermatodea_contig9318:319..3420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925400.4121966-CDS-S-dermatodea_contig9318:318..5221622925400.4121966-CDS-S-dermatodea_contig9318:318..522Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9318 319..522 +
1694079908.004145-CDS-S-dermatodea_contig9318:318..5221694079908.004145-CDS-S-dermatodea_contig9318:318..522Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9318 319..522 +
1622925400.4258087-CDS-S-dermatodea_contig9318:3327..34201622925400.4258087-CDS-S-dermatodea_contig9318:3327..3420Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9318 3328..3420 +
1694079908.01362-CDS-S-dermatodea_contig9318:3327..34201694079908.01362-CDS-S-dermatodea_contig9318:3327..3420Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9318 3328..3420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9318.17369.1prot_S-dermatodea_contig9318.17369.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9318 319..3420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9318.17369.1

>prot_S-dermatodea_contig9318.17369.1 ID=prot_S-dermatodea_contig9318.17369.1|Name=mRNA_S-dermatodea_contig9318.17369.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=99bp
MDTTQAEATGAGGRDQEMRSMDGYEVPSVGERRASSATPALSPAKFSEAI
DAIGMGPFQRRLAVMCGMGWVIDALEIVVISFVLEDVAISFNLGSVGKG
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mRNA from alignment at S-dermatodea_contig9318:319..3420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9318.17369.1 ID=mRNA_S-dermatodea_contig9318.17369.1|Name=mRNA_S-dermatodea_contig9318.17369.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3102bp|location=Sequence derived from alignment at S-dermatodea_contig9318:319..3420+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACACAACCCAAGCTGAAGCGACGGGTGCCGGCGGTAGAGACCAGGA
GATGCGCTCGATGGATGGGTACGAGGTTCCTTCGGTCGGGGAGCGGCGCG
CTTCTTCCGCAACCCCTGCTCTCTCCCCGGCAAAGTTCTCCGAAGCGATC
GATGCTATCGGGATGGGGCCGTTCCAGCGACGGCTCGCGGTCATGTGCGG
GATGGTGAGCGTGCGTGGCGCGCTTGCCTGCGAAGGATTCTGCAGTCTGT
TTGTTCTGTCGTTCAAACAAAGCGCTTGACAGAGTACTGTAGCGTACACG
ATGAAAAGTGGAGCAAGTGCTTTAGTTTGAGCCCTCTTATGATAAACAAT
TTAAATGCAGACAGCAATACGAAATCATACTATCATACTCCTGTACTGCT
GTACGCTCATCGTTTTGTAGTCGGAACATCAACCGCCGCTGTTGTTGTAT
TCCGCCGCCTTCCGACTCCCAAATCCCAAAGGGACAACTCGCTCGGGTTT
TCAAGCGGTGCCATATCGTCTAGGCAGAGAAGGTGCCAAACAGCAAAGCT
TCCACTCTCGCATGCGTCCCCTTACGTTAGAAAACTGCACGTTTTACGTT
GATACGCTCGTTTATCTTCTTTGCGCTATGATATGATACTTTGTAAAACT
CTACCTGATATATCATGATATAAATCAGCTGTGAGAGTATCACGACGCCT
GCTCGGACTCCAAAGTGGCTCGCGTCCCGCGATAGCAGCAGAGCAGTTGA
CCAGAGGTGCCAAGCTCCACACACGCGAGTGTTCGCTGTCGTTAGAACTC
TCCGAACTCGTCCGCCCATACGGCCGTTTCTCTCCTTTGCAGACCGCCAC
TACGACGGCTGTGCGACGTGCGATGTACATTTACCCTGAAGAGAAAGAAA
GTTCCTATCATATACCTCACCATGCCTAGACCGGCCACCGATCGATCTGC
GCATCTGCACAGCGCGCCCACCTCTTCTCATGCCAATACAAGTACACGCT
TGACTTGCGTTATTTTGAATCCCAAACCCCGAGACGGGCAGTTTACTGTT
TACGGTTTACGATACGCGCACTCTCCTTACAGTATTTCCCTTTCATACTC
CGCTTTCTTATGTTATGTTGTGATGTGTACGGCGTGATCACGCACGCGCC
CTCAACGACGAGCGCTCATTCAGCGCACAAGAAGGCGAATACAGGTTCAA
GTACTGTACTCTTGTACTTTTATTTTACGTACTGCTTGTACTTGTAGCTC
TATACGATATGCGGTGAACGCTGCGTTTGGATAGATCATATCCTACTCCT
GCTGTGCCAATTTATCAAACGTACTCTTTGCGTGTCTGACCGCAAGTCGT
GTGTCGGATTAAGCCGATCGGCTACAAGTATACGTGTGCAAATCAAATCA
AATCAATCAAATCAATCAAATTCTCGAGTTCGAGCAGTTATTCTGTTGAT
TTAGCATTTCATACTCTGGCTGTATGTGTACTGTTGTATGTGTGGTAACA
CGCTTCAGCCAAGGAGCGTCCTGACCTTTGGAAAAATACCTATACTTAAT
ATAGGTCTTTTTCCAAAGGTCCTGACGCTCGCACTGGTGGCGGGTTACAA
CAAGGGCTACCACAGCTACATGTAACTCTTGTGCACTCGTTCTGGCCAAA
GCGTCACAACCTGGTACGCCAGCCTGGACTCCAAAAAACACCGGGCTGGG
GGTGGAGCGATGGCTTGGCTGTCGCCTCGAGCGCCCTATCGGGGCTTCGC
GCTCAGACTTGTGGGCCTCAGAATTTCCCTGAAATACACCCCCCTCCCTC
CCTTCTTCTACGCATGTGACTATAAGAGCTACACGAGCTGGAATGCTGAT
GTTCGATGCGAGATACGTTGCGCGCTGATTTGTAACTATACGAAAGGTAA
ACACGCGTGTGCTGCAGCCCGTTTCACGCTGACTCACGCTACGGTGTCAT
GTCTGCGTCGGATTTTGTTCCATTGAGCAAAGCCGATGGCGAAGTTCGCA
CAATCTCCTCTCACATCGTCACACGACAAGATATCATAATATCCGCTAAC
AGCAACGGTAGCCCGGCGGGGTGCTCCCAAGAGTCGAAACCTAAATGTGG
CACGCCGCGTCTTGCTCCAATTTCACCTCTCAAGGCTCGTCGTTGTCCCA
ACCGCGTTTGGTTTACCGCAGCCCTGAAGAGGGCACGTTTACGCCTGAAA
AGGGCACGTGATGTCGCCAAGCGCTCGCAATCATAGTCTAGGCTCATGCC
ACATCACTACTACTTGCAGTAATCGCATTTGCCATATTGTCTTGCGTCGC
CCCCGGGAGGCACGCGCACGTACCTACCTCCCGAAGGGGGACCTTGTAAT
CATGTACCGAATGAAGGCTAACCTTAGCAGAGAAAGCGAGAGCGGTCAAG
ACTGTCTTCCTCCGGTCTTATCGTGCTACGCGCAGTTTCCTCCTGCTCGA
GAATGATGGCCCTCAAACGCCTCGGGGCCGTGGTCTCCGGCGTCGCGTTC
GAGACTCCAACATTTCCATGCTGGCCGCTTTTCGCAGCAGTTCTTGCCCC
CGATCGAGCATAGCACATTTTTGTACGCCCCCCAGAGAGTTGGTGAAACA
CTGCCGCTCGGACTAAAATGTAACACTTACGCGGGGCCGGTTGGACTCCT
CCGACCGCGCACTAGACGTCGCTATGGCGCTTACTGCTGCGTTCACTCGT
GACAAGATGGGGCTATCTGCGAAGAAGCACGCAGCTCGTGACCAAACCAC
GAGCCCACACGGTTTGTCGCAGACGCACCCGCTACTGTTCGAGCTGCCGC
TGGATCGGTCTCCTCAGCTTGCGCTTTGCGAGATTTTCCAGCAAACGCCT
TAATCACACGCCTCACGGTCCCTGTGCTACGCCCCTCGTGTCACCTGCTT
GCTAAAAAACCACGGATGAATCAATCGCCAGCGTGCCCTCCCCTACCCCG
CCTCGCTTTGCTCCCTCTGCACCCGTGGCCTGTTGTCTCTTCCTTCTCCG
ACGACGAAGGGATGGGTGATCGATGCCCTTGAGATTGTCGTAATCTCGTT
CGTTTTGGAAGATGTGGCCATCTCGTTCAACCTGGGCAGTGTCGGAAAGG
GG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9318:319..3420+

>mRNA_S-dermatodea_contig9318.17369.1 ID=mRNA_S-dermatodea_contig9318.17369.1|Name=mRNA_S-dermatodea_contig9318.17369.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at S-dermatodea_contig9318:319..3420+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACACAACCCAAGCTGAAGCGACGGGTGCCGGCGGTAGAGACCAGGA
GATGCGCTCGATGGATGGGTACGAGGTTCCTTCGGTCGGGGAGCGGCGCG
CTTCTTCCGCAACCCCTGCTCTCTCCCCGGCAAAGTTCTCCGAAGCGATC
GATGCTATCGGGATGGGGCCGTTCCAGCGACGGCTCGCGGTCATGTGCGG
GATGATGGACACAACCCAAGCTGAAGCGACGGGTGCCGGCGGTAGAGACC
AGGAGATGCGCTCGATGGATGGGTACGAGGTTCCTTCGGTCGGGGAGCGG
CGCGCTTCTTCCGCAACCCCTGCTCTCTCCCCGGCAAAGTTCTCCGAAGC
GATCGATGCTATCGGGATGGGGCCGTTCCAGCGACGGCTCGCGGTCATGT
GCGGGATGGGATGGGTGATCGATGCCCTTGAGATTGTCGTAATCTCGTTC
GTTTTGGAAGATGTGGCCATCTCGTTCAACCTGGGCAGTGTCGGAAAGGG
GGGATGGGTGATCGATGCCCTTGAGATTGTCGTAATCTCGTTCGTTTTGG
AAGATGTGGCCATCTCGTTCAACCTGGGCAGTGTCGGAAAGGGG
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