mRNA_S-dermatodea_contig9282.17347.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9282.17347.1
Unique NamemRNA_S-dermatodea_contig9282.17347.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9282.17347.1 vs. uniprot
Match: A0A6H5L705_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L705_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 6.600e-55
Identity = 98/115 (85.22%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:    4 GIISRVKGIQDRAGRTQAKLHSYNAILLKIKSLHAWSDPGRTRAWVAAVSLVAAVLAIVPARYTFAAMVLFLFTEPVRPKGKTIPELLFEDFWGGLPVESGTHTNVRMAAIYSRH 348
            GIISRVKG+QDRAGRTQAKLH+YNA+LL++KSLHAWSDPGRT+ W AAVSL+AAVLAIVPARYTFAA+VLFLFTEP+RP+ K I ELL EDFW GLPVESGTHTNVRMAAIYSRH
Sbjct:  416 GIISRVKGMQDRAGRTQAKLHAYNAVLLRVKSLHAWSDPGRTKVWAAAVSLLAAVLAIVPARYTFAALVLFLFTEPIRPETKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRH 530
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BLAST of mRNA_S-dermatodea_contig9282.17347.1 vs. uniprot
Match: D8LLQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ6_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.920e-54
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = 1 
Query:   28 IQDRAGRTQAKLHSYNAILLKIKSLHAWSDPGRTRAWVAAVSLVAAVLAIVPARYTFAAMVLFLFTEPVRPKGKTIPELLFEDFWGGLPVESGTHTNVRMAAIYSRH 348
            +QDRAGRTQAKLH+YNA+LL++KSLHAWSDPGRT+ W AAVSL+AA+LAIVPARYTFAA+VLFLFTEPVRPK K I ELL EDFW GLPVESGTHTNVRMAAIYSRH
Sbjct:    1 MQDRAGRTQAKLHAYNAVLLRVKSLHAWSDPGRTKVWAAAVSLLAALLAIVPARYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRH 107
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BLAST of mRNA_S-dermatodea_contig9282.17347.1 vs. uniprot
Match: A0A835YWJ6_9STRA (PRT_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 9.490e-28
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:   52 QAKLHSYNAILLKIKSLHAWSDPGRTRAWVAAVSLVAAVLAIVPARYTFAAMVLFLFTEPVRPKGKTIPELLFEDFWGGLPVESGTHTNVRMAAIYS 342
            QAKLH+YN  LLK++SL AW+DP RT+ +V  +   A +LA +P RYT+A  V+FLFT+P+R   KT+PELL +DFW GLPV+S  HTN+ MAAIY+
Sbjct:    2 QAKLHAYNVALLKLRSLVAWTDPTRTKVFVLFLLFAALLLATIPLRYTWAGAVVFLFTKPLRSMKKTVPELLLDDFWRGLPVDSALHTNLDMAAIYT 98
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BLAST of mRNA_S-dermatodea_contig9282.17347.1 vs. uniprot
Match: D8LLQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ4_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.620e-18
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:  199 AAMVLFLFTEPVRPKGKTIPELLFEDFWGGLPVESGTHTNVRMAAIYSRH 348
            AA+VLFLFTEPVRPK K I ELL EDFW GLPVESGTHTNVRMAAIYSRH
Sbjct:  103 AALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRH 152
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BLAST of mRNA_S-dermatodea_contig9282.17347.1 vs. uniprot
Match: A0A7S1CBD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBD2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.140e-11
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    7 IISRVKGIQDRAGRTQAKLHSYNAILLKIKSLHAWSDPGRTRAWVAAVSLVAAVLAIVPARYTFAAMVLFLFTEPVR 237
            ++ R + ++D  GRTQ ++H +N +LLK++SL+AW +P RTR  +A       + ++VP R  FAA V+FLF  P+R
Sbjct:   38 LLDRFRRLRDTLGRTQRRMHRWNMVLLKMRSLYAWQEPSRTRMLIAGNLFFVLLFSVVPFRLLFAAFVIFLFARPLR 114
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9282.17347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L705_9PHAE6.600e-5585.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLQ6_ECTSI1.920e-5485.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YWJ6_9STRA9.490e-2857.73PRT_C domain-containing protein n=1 Tax=Tribonema ... [more]
D8LLQ4_ECTSI3.620e-1888.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CBD2_9STRA4.140e-1141.56Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9282contigS-dermatodea_contig9282:2197..4599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue4.6e-13
Seed eggNOG ortholog44056.XP_009037075.1
EggNOG free text desc.Domain present in PSD-95, Dlg, and ZO-1/2.
EggNOG OGs29GBP@1,2RPHW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_004880.1
Exons3
Model size1302
Cds size366
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9282.17347.1prot_S-dermatodea_contig9282.17347.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9282 3133..4599 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925398.8330178-UTR-S-dermatodea_contig9282:2196..31321622925398.8330178-UTR-S-dermatodea_contig9282:2196..3132Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9282 2197..3132 -
1694079907.006755-UTR-S-dermatodea_contig9282:2196..31321694079907.006755-UTR-S-dermatodea_contig9282:2196..3132Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9282 2197..3132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925398.8439596-CDS-S-dermatodea_contig9282:3132..33101622925398.8439596-CDS-S-dermatodea_contig9282:3132..3310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 3133..3310 -
1694079907.027284-CDS-S-dermatodea_contig9282:3132..33101694079907.027284-CDS-S-dermatodea_contig9282:3132..3310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 3133..3310 -
1622925398.858201-CDS-S-dermatodea_contig9282:4145..42791622925398.858201-CDS-S-dermatodea_contig9282:4145..4279Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 4146..4279 -
1694079907.0395205-CDS-S-dermatodea_contig9282:4145..42791694079907.0395205-CDS-S-dermatodea_contig9282:4145..4279Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 4146..4279 -
1622925398.867683-CDS-S-dermatodea_contig9282:4545..45991622925398.867683-CDS-S-dermatodea_contig9282:4545..4599Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 4546..4599 -
1694079907.0495362-CDS-S-dermatodea_contig9282:4545..45991694079907.0495362-CDS-S-dermatodea_contig9282:4545..4599Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 4546..4599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9282.17347.1

>prot_S-dermatodea_contig9282.17347.1 ID=prot_S-dermatodea_contig9282.17347.1|Name=mRNA_S-dermatodea_contig9282.17347.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=122bp
EGIISRVKGIQDRAGRTQAKLHSYNAILLKIKSLHAWSDPGRTRAWVAAV
SLVAAVLAIVPARYTFAAMVLFLFTEPVRPKGKTIPELLFEDFWGGLPVE
SGTHTNVRMAAIYSRHKLKID*
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mRNA from alignment at S-dermatodea_contig9282:2197..4599-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9282.17347.1 ID=mRNA_S-dermatodea_contig9282.17347.1|Name=mRNA_S-dermatodea_contig9282.17347.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2403bp|location=Sequence derived from alignment at S-dermatodea_contig9282:2197..4599- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGGTATCATAAGCCGAGTGAAGGGCATACAGGACCGCGCGGGGAGAAC
CCAGGTGCTGTTTCTTTCTTTCCATCCGAACGCTCGTTCTCTCGGGTGGA
ATCGTTCGGCGTAGCGTAGTCCTGGCCCATGGTCGGACGTGCACAATGGC
GACGAAGAAGATATTGTAATGACCTAAGAAACTACACGATGGTACAAAAC
AAGGGACACCCATCGTCCCCTTGAGTGGCACATCCGTGGATTTCTTACCG
GTAGTGTGTACGAAGGACGTCGCCTAACGCCTCGGCGCTGCATTTCCGAT
TCCCCTCAACGCTTGCACAGGCAAAGCTACACTCGTACAATGCCATCCTC
CTGAAGATCAAGAGCCTGCATGCCTGGAGTGATCCTGGACGCACAAGGGC
CTGGGTGGCAGCTGTCTCGCTGGTGGCCGCCGTGCTCGCGATCGTGCCCG
CTAGGTGGGTCCGTTTGTCTCCTAGAACCCGTAGCTAGATGCAGCCTGTG
CTTGCGAAACACTTCGTGATGAATCGCTCTGCCCAGGCCTTCTAGTGAGG
CCCGGTAATTATTCATATGAGCAACTGCAAGCGGCATTGTCATGAACGCA
TGCTATTGAGGTGCGCGACCGTCCGCGTACGAATTCCATGTTTTGTTTTT
CTCATCGGATGGGCGAAATAAAATATACCATCTGACGTCCTAATGGTAGA
TTTGGTGGTATTGCGTGGTCATCCTTTTGGTCGCCTTACGCTTGTCATGC
AGTGTTGATCTCGCCAAATATCTAGTTTGTTACATGGGCCCACAAAGGTA
ATTATTTGTACCTTATCGTATCATACAACAGTAGACTAATTCTCGCCACC
AAGGAGCGGGGAAAAAAGAGGGGCGCCCGTACGTGCGTGCGAGTTGACCC
CTGATTGCTTCGCCCACCGTTCTTAAACGTCTTCCCTTGCGTTACGGTAC
GGAGGCGGGGGAGTGGCGGGGTGAGACAGCCTGAAAGGGTCGTTGCTACC
CCGACGCACACGTAGAGGGTGAGACTCGTGGAGACTTGCCGCACTTCGTG
TATCCATCCCACGTAGACAAGCTTATGGCGAGCTCCAGTGAAAACATAGA
AGTCGCACGAGGGTGAAACACTCACAAACATGGGAGAATATGTGCCCGCT
GGCTTGCCCATCAAGTCAAGCGCGTTCCCCTCGCAGTGAACCCCACTGCT
GCTGCCGCCGCCGCCACCGCCGCCACCCCCCTGCGATTTTCCCTGGGCGT
ACAAATGCCTCACGTCCGACTGCTGTTTCGTTTGTACAGGTACACGTTTG
CGGCGATGGTGCTCTTTCTCTTCACGGAGCCAGTCCGCCCTAAGGGCAAG
ACCATCCCCGAGCTCCTTTTCGAGGACTTTTGGGGAGGCCTCCCCGTCGA
GTCCGGCACCCACACAAACGTGCGCATGGCGGCTATCTATTCGCGGCACA
AGCTCAAGATAGATTAGAGCGGGCGGCCCTTATTTTTGAATGTGCCGTGT
TGACCCGATACTTGTCGTCCGGCGAGTGTGTTGTGTTTGAAAACTGCTGG
CGTGATATTTCGTCATGGAAATTGGATCGTATCGTTGCAGGAAGGAAGGG
GAGGGGTGTGTTGTGTGGGTTGCTTGTAATCGTGGTGATTTCCCTTCGTT
TGGGCGATGATTTGTTCATTTTTGGCTGAGCCGTGGCCAGCTTTTTCACG
TTTGTGCTTGGTCGGCTTTAGCCGGTCGAACGTTTGTGGCGGATCGGGCG
CATGTTCTGACGGGTTTGTTGGCAAGGTTTTCGTTGCGCCCTACAAGGGT
GCTTGCTTTTTTGTCGCCCTCCAGCGTTTCAAGCTTGCTGTGAGTCGACG
CAAGGTTGTGTAATCCGAGGGGCTTGCTGTGTGCCATTGACGTAGAAAGA
CCGTATCGAGATCGTGGTTACACATCAGATTATTCTGTTGCGGAGGGCCG
AGCTTGAGAAACACGGGACGACCTGTTGTGGGCCAAACTATAGTAGTTGT
GCTTTGTACGCTAAGTTTTGTTACGCGGCAATAGCTTGCCTCGCCGAGAA
AACTGCCCAGTACTTCCATATGGTTCGATCCACGCATATAGTAGATCGTG
ACTTTTGTCACGGATATGATTTTTGGGCCGTGGGGTACGCGCTTAGCTCA
CCGTCCTGATAAATCACCGCCTGCACCGGGTCACTCCCGTGGTATTGTTG
TCGCAATCGGTCATCGTGCTTTCCGCCTTTTTAAGCGTCGGGGTTGACAT
GCGTGGGGGAGGCATGTACCAGCTGTTGGTGCGCTGTTGTCGGTGCGCCT
ACCCAGTACCCCCTGAATTGATGAGAAGAAAAGCAAGAAGGAGGGGGCGT
GGTGGGTGGGTAGTAACGCCTCCGCCGGTGATGAGGAGGGGAGCGAGGGC
GAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9282:2197..4599-

>mRNA_S-dermatodea_contig9282.17347.1 ID=mRNA_S-dermatodea_contig9282.17347.1|Name=mRNA_S-dermatodea_contig9282.17347.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at S-dermatodea_contig9282:2197..4599- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGGTATCATAAGCCGAGTGAAGGGCATACAGGACCGCGCGGGGAGAAC
CCAGGAGGGTATCATAAGCCGAGTGAAGGGCATACAGGACCGCGCGGGGA
GAACCCAGGCAAAGCTACACTCGTACAATGCCATCCTCCTGAAGATCAAG
AGCCTGCATGCCTGGAGTGATCCTGGACGCACAAGGGCCTGGGTGGCAGC
TGTCTCGCTGGTGGCCGCCGTGCTCGCGATCGTGCCCGCTAGGCAAAGCT
ACACTCGTACAATGCCATCCTCCTGAAGATCAAGAGCCTGCATGCCTGGA
GTGATCCTGGACGCACAAGGGCCTGGGTGGCAGCTGTCTCGCTGGTGGCC
GCCGTGCTCGCGATCGTGCCCGCTAGGTACACGTTTGCGGCGATGGTGCT
CTTTCTCTTCACGGAGCCAGTCCGCCCTAAGGGCAAGACCATCCCCGAGC
TCCTTTTCGAGGACTTTTGGGGAGGCCTCCCCGTCGAGTCCGGCACCCAC
ACAAACGTGCGCATGGCGGCTATCTATTCGCGGCACAAGCTCAAGATAGA
TTAGGTACACGTTTGCGGCGATGGTGCTCTTTCTCTTCACGGAGCCAGTC
CGCCCTAAGGGCAAGACCATCCCCGAGCTCCTTTTCGAGGACTTTTGGGG
AGGCCTCCCCGTCGAGTCCGGCACCCACACAAACGTGCGCATGGCGGCTA
TCTATTCGCGGCACAAGCTCAAGATAGATTAG
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