mRNA_S-dermatodea_contig9277.17339.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9277.17339.1
Unique NamemRNA_S-dermatodea_contig9277.17339.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9277.17339.1 vs. uniprot
Match: D8LFG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG6_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.700e-17
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:   85 IAWDERTDAVQMGWAYIVGREVI--DKCVLSVVDTIGWRWAGLLFSYVWLSSLVLGQSLVVRLCCGKLREAERGAALKTAVVQAWRALVFTNVVLAPK 372
            + WDER   V    AY+ G      + C+  V++T GWRW  +LFSY WL  L + Q  ++RLCCGKL+  ER  A  T + + W + +F NVVLAP+
Sbjct:    1 MGWDERDHVVGACTAYLSGDPDTRPEHCLSKVIETFGWRWGFVLFSYSWLVFLWIVQGALIRLCCGKLKPVERARATATVLGKVWSSFLFVNVVLAPE 98
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BLAST of mRNA_S-dermatodea_contig9277.17339.1 vs. uniprot
Match: A0A6H5KCR0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 9.360e-17
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:   85 IAWDERTDAVQMGWAYIVGREVI--DKCVLSVVDTIGWRWAGLLFSYVWLSSLVLGQSLVVRLCCGKLREAERGAALKTAVVQAWRALVFTNVVLAPK 372
            + WDER   V    AY+ G      + C+  V++T GWRW  +LFSY WL  L + Q  +VRLCCGKL+  ER  A    + + W + +F NVVLAP+
Sbjct:    1 MGWDERDHVVGACTAYLSGDPDTRPEHCLSKVIETFGWRWGFVLFSYTWLVFLWIVQGALVRLCCGKLKPVERARATAAVLGKVWSSFLFVNVVLAPE 98
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9277.17339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFG6_ECTSI4.700e-1742.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCR0_9PHAE9.360e-1742.86RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9277contigS-dermatodea_contig9277:4168..7287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size380
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925398.2795746-CDS-S-dermatodea_contig9277:4167..42661622925398.2795746-CDS-S-dermatodea_contig9277:4167..4266Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9277 4168..4266 +
1694079906.6753256-CDS-S-dermatodea_contig9277:4167..42661694079906.6753256-CDS-S-dermatodea_contig9277:4167..4266Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9277 4168..4266 +
1622925398.2887638-CDS-S-dermatodea_contig9277:7008..72871622925398.2887638-CDS-S-dermatodea_contig9277:7008..7287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9277 7009..7287 +
1694079906.6890938-CDS-S-dermatodea_contig9277:7008..72871694079906.6890938-CDS-S-dermatodea_contig9277:7008..7287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9277 7009..7287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9277.17339.1prot_S-dermatodea_contig9277.17339.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9277 4168..7287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9277.17339.1

>prot_S-dermatodea_contig9277.17339.1 ID=prot_S-dermatodea_contig9277.17339.1|Name=mRNA_S-dermatodea_contig9277.17339.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=126bp
HISHPGIIGPRTDPSCERRPTTDDHTEAIAWDERTDAVQMGWAYIVGREV
IDKCVLSVVDTIGWRWAGLLFSYVWLSSLVLGQSLVVRLCCGKLREAERG
AALKTAVVQAWRALVFTNVVLAPKV*
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mRNA from alignment at S-dermatodea_contig9277:4168..7287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9277.17339.1 ID=mRNA_S-dermatodea_contig9277.17339.1|Name=mRNA_S-dermatodea_contig9277.17339.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3120bp|location=Sequence derived from alignment at S-dermatodea_contig9277:4168..7287+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CATATCTCACACCCAGGTATCATAGGGCCCAGGACGGACCCCAGCTGCGA
GAGACGGCCCACAACAGACGACCACACGGAAGCTATAGCGTGGGACGAGG
TATGGTGAACGCTAGCTGAAATGCAACCCCGCTCACATGCCCACCCAGCA
GGTACGCTGGTGTTTGTTACTCCCCCCCCCCTCCCTATCGTACGAACTTT
CCATAATACAACAGAGTCAATTATATATAAGTAGTATTTATAGTACGGAC
GCACAGCAGAGTCACGACCAAACAACAATAGAGCAGAGCTTTCGTGCTTC
GGCCCCGAGGCTGCTTGTGCGCGCCCAAGCCTTCATGGCGGGGGCTTGCT
TGCCCGAAGCGTTGCAGTGTCGTGAGGCTCGTCGGAGCAGCGTTCTCAGG
ACTATATATCACCTACCACTCTCATCCAAAGTAGTATTATTGTTATACTC
TATACTATCGTTGCCGAGTCGGCAGAGAGGGCTATCTTAGGCGTGTGGCA
TCATGAATGCCCCGAACTGCAATGCACTTGCTGCACTCCTTTGGGCGGGG
TCGAAGCTGGTGCGTGGGTGGTCTGCGGAGGATTCGCTGGCTGCAGCTTT
TGCAAACCTCAGAGTGTACGTCGATTGGAACAATGGGCAGGGCGCGATCG
CATGCCAGGGCGCGATCGCATCTGCCTCTCGTGCTGCGTTGTGTGTATGT
TTGCTCTTGTCTGGGGCATCGGCCCCTCTCGCACACACAAGCAGTGAACG
CCATTCCAAAACAGTACCATACGTTTTTGAAAGTTTGAAGTTATTCGCCA
GCACACCAGGGACGGTACGATGTATAGTAGAAGTAGAGTTACATGGTTAT
GATTAGTTCTTTTTCTCCTTGACTCTTTGCGTGTCTGACCACAAGTCGGG
TCGGATTAAGCCGATCGGCTATCATATACGTGTGCAAATCAAATAAAATC
AAATCAATCAAACAGCTCAAGCGGAAAGCCACCACACGCCCAAATACTAC
TCTGTATACTGTACAAGCAATAGCTCCAGACGCTGACTTTCTTTTCAGAC
ACGACGCATTCTCCATGTCAGAGCTCGTCCGCAGACAAACCACCCCATCG
CCCGACGCCAGCGCGACTGCCGGGTTGCACAGGCAGTTGGTATAATGTAC
AATGTTTGCATGTACCGTGGTACAAGTACAGAATCGAAAAACATTTACAA
CTTGTATTTCAGAAGTGACTCCGCTGGGCGAACGAAATCCTACGTGCAAA
GCACGCATAGCGTCATAGCGTAGACCTTCTGCACAACTTCACTAAATGTT
ATGTTAATGTTAATGTTAATGTTAATACAAGCAAGGGCCAAGGTACAAGT
AAGCTTGTATGTGTCATCTTCTATGGTATTAATAGTTTTATTTATAATAG
TAGGGTCATATATATACAATGTACATCCTGCTGTAGAGACGCTGGGACAG
CCGGTGGGCTGCACGCGCTCCGCGTTTGGAAGATCAGCCCTTAAGAGTGT
GAGCACCCTGCCGAACACCCTGCCCGACCGGATACGTACCCGTAAGAAGT
CAAGGAACTGGTGATGGGACATGGTGATTATTGTGGTAATGTCTTCCCTC
GCTGCGCTTTCCGAGATCCTCGCGTCTATGTACTATCTACTGGTGGACAA
GTACCGGTGCAATACAGCAGTATTACAGAGTAGTTTTAGTATTAATAATC
CCACCACGTGTTTTTGTTCCTTGTTTTTTTTTGGTCGACGTGGAAGTGTG
TATCATACCATGCTTCTTCGTGAACGAGTATTGCTGTGCCTCCGTGTGAT
GCAGACGCAGCGCAGCGGGCGTCACTTGTGCATTTATCATATTATACAAC
ATGTGATAATTGTTCGTCACTCTTTTTTTTCATACATACTTGTGTACAGT
AGTAGTATTGATGCCGCCCAGAGGACCTGGAACAAAAGTCGAAACATACG
CTTGCTTTCGCTTAGCGAGATGACTGAACTAGATAATGAACAGCGAAGGG
CGAGACCAGCCGCCCGCGACTACACTACGCCCGGCGGCAAACAAAAAGGG
GGCTTAAGTAATACCAGGTAGGTAATAGGCCACCAGAGTGAGTGTGGATG
GGACTAAAGTAGTTTTATGGTATAATAAAACCTCCCACAAGCGCCATTGT
TTTTCACATGTTTTACTTGACCTGCGAGTCGGCGTTGATAACAATTGTGC
AGTCCAGGTGTGAAATACGTCATCTATATTTATAGTACTTACTGTACACA
GTTGTACACATATTATAGTGCTTCGACTCATCCTCATCCTTCCTCCTCAC
TCCCTCTGTGTCTGTGTAGCTACCATAGCGTGCATGGTATCATAGGTAAA
CTAAATGTATGATACGAGATTCAAAATCTCCCGTTAAGAACAAAAGTTTT
GTGATAGGAGCCCCCCCCCCCCCCCCCCCCCCCCTGCTTACAGCGGCGAA
GTAAATGTACAGTAGTATAATAGTATCCTTGATACTTACGCTCGTGTAAA
GAAAGGGACGCCATACGCATAAAGGTGGAGAGGGGTGTGCAGGCAACTCG
ATCGTGAGTCTACCCCCCCCCCCCCGCCCCCGTCCTCGCCCACACTTTTC
CCCGAACCCCACCGTTCGGGAAGGATCCACGAACCCTTCATGTGGCCCTC
CGGACGTGGTCGGAAGCAACATGTTTGAACAGTGACCTCGCTATAAATAT
CCACCCCAGCCAACCACAACCCGACACACGCGCATGACAAACGCCAGGAA
AAGGAACCCCCCCACCCCTCCCCCCCCAACCCCCACTACCCCTCCCCCCT
CCCCCCCCCCCCCCGCTCGCGCCCGCCTCCTTACGTCCCAGAGAACGGAC
GCTGTCCAGATGGGTTGGGCGTACATCGTGGGACGCGAAGTGATCGATAA
GTGCGTGTTATCCGTGGTCGACACCATCGGGTGGAGATGGGCGGGGCTAC
TTTTCTCGTACGTCTGGTTGTCGTCTTTGGTCTTGGGGCAGTCCTTGGTA
GTGCGGCTGTGCTGCGGGAAGCTCCGGGAGGCGGAGCGGGGCGCGGCTTT
GAAGACCGCGGTGGTGCAAGCGTGGCGCGCGCTCGTCTTCACCAACGTCG
TGCTTGCCCCTAAGGTATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9277:4168..7287+

>mRNA_S-dermatodea_contig9277.17339.1 ID=mRNA_S-dermatodea_contig9277.17339.1|Name=mRNA_S-dermatodea_contig9277.17339.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at S-dermatodea_contig9277:4168..7287+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CATATCTCACACCCAGGTATCATAGGGCCCAGGACGGACCCCAGCTGCGA
GAGACGGCCCACAACAGACGACCACACGGAAGCTATAGCGTGGGACGAGC
ATATCTCACACCCAGGTATCATAGGGCCCAGGACGGACCCCAGCTGCGAG
AGACGGCCCACAACAGACGACCACACGGAAGCTATAGCGTGGGACGAGAG
AACGGACGCTGTCCAGATGGGTTGGGCGTACATCGTGGGACGCGAAGTGA
TCGATAAGTGCGTGTTATCCGTGGTCGACACCATCGGGTGGAGATGGGCG
GGGCTACTTTTCTCGTACGTCTGGTTGTCGTCTTTGGTCTTGGGGCAGTC
CTTGGTAGTGCGGCTGTGCTGCGGGAAGCTCCGGGAGGCGGAGCGGGGCG
CGGCTTTGAAGACCGCGGTGGTGCAAGCGTGGCGCGCGCTCGTCTTCACC
AACGTCGTGCTTGCCCCTAAGGTATGAAGAACGGACGCTGTCCAGATGGG
TTGGGCGTACATCGTGGGACGCGAAGTGATCGATAAGTGCGTGTTATCCG
TGGTCGACACCATCGGGTGGAGATGGGCGGGGCTACTTTTCTCGTACGTC
TGGTTGTCGTCTTTGGTCTTGGGGCAGTCCTTGGTAGTGCGGCTGTGCTG
CGGGAAGCTCCGGGAGGCGGAGCGGGGCGCGGCTTTGAAGACCGCGGTGG
TGCAAGCGTGGCGCGCGCTCGTCTTCACCAACGTCGTGCTTGCCCCTAAG
GTATGA
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