mRNA_S-dermatodea_contig9271.17329.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9271.17329.1
Unique NamemRNA_S-dermatodea_contig9271.17329.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9271.17329.1 vs. uniprot
Match: D7FQP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP3_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 2.010e-42
Identity = 73/88 (82.95%), Postives = 83/88 (94.32%), Query Frame = 1 
Query:   55 MLQQWLRERCVPVVATVVTEDAELTCRKNDLSFEQLVSAFGRMEGLKVPFRSSSQQYSLDSFSCRFVRGSSMRPSPAKEGDPSLADIA 318
            MLQ+WLR+RCVPVVAT+VTEDA++ CRKN LSFEQLVSAF RM+GLKVPFRSSSQQ+SLDSFSCRF+RGSSMRP+PA EGDPSL+ IA
Sbjct:    1 MLQEWLRDRCVPVVATLVTEDADIACRKNGLSFEQLVSAFARMDGLKVPFRSSSQQFSLDSFSCRFMRGSSMRPAPATEGDPSLSHIA 88
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BLAST of mRNA_S-dermatodea_contig9271.17329.1 vs. uniprot
Match: A0A6H5JPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY7_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.440e-39
Identity = 72/88 (81.82%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:   55 MLQQWLRERCVPVVATVVTEDAELTCRKNDLSFEQLVSAFGRMEGLKVPFRSSSQQYSLDSFSCRFVRGSSMRPSPAKEGDPSLADIA 318
            MLQ+WLR+RCVPVVAT+VTEDA++ CRKN LSFEQLVSAF RM+GLKVPFRSSSQQ+SLDSFSCRF+RGSSMRP+PA EGD SL+ IA
Sbjct:    1 MLQEWLRDRCVPVVATLVTEDADIACRKNSLSFEQLVSAFARMDGLKVPFRSSSQQFSLDSFSCRFMRGSSMRPAPATEGDRSLSHIA 88
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BLAST of mRNA_S-dermatodea_contig9271.17329.1 vs. uniprot
Match: A0A0P1AJ27_PLAHL (Protein with predicted involvement in meiosis (GSG1) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJ27_PLAHL)

HSP 1 Score: 54.3 bits (129), Expect = 3.150e-6
Identity = 26/72 (36.11%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:   58 LQQWLRERCVPVVATVVTEDAELTCRKNDLSFEQLVSAFGRMEGLKVPFRSSSQQYSLDSFSCRFVRGSSMR 273
            ++ W+++   PVV T  T +AE   RKN+LS + L++ F R+     P RS +    L SF+ RF+  S  R
Sbjct:    4 VESWVQDTFAPVVLTCSTSEAERIARKNNLSVDNLLNGFARLNDADTPLRSVTHPIQLASFNFRFIAASQFR 75
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BLAST of mRNA_S-dermatodea_contig9271.17329.1 vs. uniprot
Match: C5WY65_SORBI (Uncharacterized protein n=5 Tax=Andropogoneae TaxID=147429 RepID=C5WY65_SORBI)

HSP 1 Score: 50.8 bits (120), Expect = 5.170e-5
Identity = 31/87 (35.63%), Postives = 44/87 (50.57%), Query Frame = 1 
Query:   58 LQQWLRERCVPVVATVVTEDAELTCRKNDLSFEQLVSAFGRMEGLKVPFRSSSQ-QYSLDSFSCRFVRGSSMRPSPAKEGDPSLADI 315
            L + L E   PVV  + T  AE TCRKN LSF  ++S F   + + VP R++S+  Y L  F  R V  S +R    +  D  +  +
Sbjct:    8 LGRLLLEEITPVVMVLSTPLAEATCRKNGLSFVDMLSPFSLFKKIDVPVRTASEVPYRLQMFKIRMVYASDVRKEDCEVADERIKPV 94
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BLAST of mRNA_S-dermatodea_contig9271.17329.1 vs. uniprot
Match: A0A5J9WBM3_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WBM3_9POAL)

HSP 1 Score: 50.8 bits (120), Expect = 5.170e-5
Identity = 31/87 (35.63%), Postives = 44/87 (50.57%), Query Frame = 1 
Query:   58 LQQWLRERCVPVVATVVTEDAELTCRKNDLSFEQLVSAFGRMEGLKVPFRSSSQQ-YSLDSFSCRFVRGSSMRPSPAKEGDPSLADI 315
            L + L E   PVV  + T  AE +CRKN LSF  ++S F   + + VP R++S Q Y L  F  R V  S +R    +  D  +  +
Sbjct:    8 LGRLLLEEITPVVMVLTTPLAEASCRKNGLSFVDMLSPFSLFKKIDVPVRTASDQPYRLQMFKIRMVYASDVRKQDYEVADERIKPV 94
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9271.17329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FQP3_ECTSI2.010e-4282.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPY7_9PHAE1.440e-3981.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0P1AJ27_PLAHL3.150e-636.11Protein with predicted involvement in meiosis (GSG... [more]
C5WY65_SORBI5.170e-535.63Uncharacterized protein n=5 Tax=Andropogoneae TaxI... [more]
A0A5J9WBM3_9POAL5.170e-535.63Uncharacterized protein n=1 Tax=Eragrostis curvula... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9271contigS-dermatodea_contig9271:5003..7652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue2.4e-35
Seed eggNOG ortholog2880.D7FQP3
Preferred nameTRAPPC8
KEGG koko:K05750,ko:K11268,ko:K20305
KEGG Pathwayko04810,map04810
GOsGO:0000003,GO:0000045,GO:0000407,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006996,GO:0007030,GO:0007033,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016237,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022414,GO:0022607,GO:0030008,GO:0030242,GO:0031267,GO:0031410,GO:0031982,GO:0032258,GO:0032991,GO:0033036,GO:0033365,GO:0034497,GO:0034613,GO:0034727,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045184,GO:0046907,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071255,GO:0071702,GO:0071705,GO:0071840,GO:0072665,GO:0097708,GO:0098772,GO:0099023,GO:1905037,GO:1990072
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1938@1,KOG1938@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9271.17329.1prot_S-dermatodea_contig9271.17329.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9271 5057..7652 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925397.752409-UTR-S-dermatodea_contig9271:5002..50561622925397.752409-UTR-S-dermatodea_contig9271:5002..5056Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9271 5003..5056 +
1694079906.2998612-UTR-S-dermatodea_contig9271:5002..50561694079906.2998612-UTR-S-dermatodea_contig9271:5002..5056Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9271 5003..5056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925397.7663562-CDS-S-dermatodea_contig9271:5056..51691622925397.7663562-CDS-S-dermatodea_contig9271:5056..5169Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9271 5057..5169 +
1694079906.3135028-CDS-S-dermatodea_contig9271:5056..51691694079906.3135028-CDS-S-dermatodea_contig9271:5056..5169Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9271 5057..5169 +
1622925397.7776732-CDS-S-dermatodea_contig9271:7498..76521622925397.7776732-CDS-S-dermatodea_contig9271:7498..7652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9271 7499..7652 +
1694079906.3257384-CDS-S-dermatodea_contig9271:7498..76521694079906.3257384-CDS-S-dermatodea_contig9271:7498..7652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9271 7499..7652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9271.17329.1

>prot_S-dermatodea_contig9271.17329.1 ID=prot_S-dermatodea_contig9271.17329.1|Name=mRNA_S-dermatodea_contig9271.17329.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
MLQQWLRERCVPVVATVVTEDAELTCRKNDLSFEQLVSAFGRMEGLKVPF
RSSSQQYSLDSFSCRFVRGSSMRPSPAKEGDPSLADIAA
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mRNA from alignment at S-dermatodea_contig9271:5003..7652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9271.17329.1 ID=mRNA_S-dermatodea_contig9271.17329.1|Name=mRNA_S-dermatodea_contig9271.17329.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2650bp|location=Sequence derived from alignment at S-dermatodea_contig9271:5003..7652+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTAGTACAGTAAAATCGTAGCCTTTTTGTTCTCGGAGGAGAGGGGCTGGT
CATCATGCTCCAGCAGTGGCTTCGAGAGCGGTGCGTGCCAGTGGTGGCGA
CGGTCGTGACGGAGGATGCCGAGCTCACCTGCCGAAAGAACGACCTCAGC
TTCGAGCAGCTCGTCAGGTACGAACAGGCGAAAGTGAAAACCGCATGTCA
TGTTCACGTGTATACAAGTATGCCATGACTTTCTTGATTAAATTTAATTA
ACAGCGCTTTGCACGTTTGTTTTGTTTAGAAGTTAGAGGGGCGCCTTTGA
TGCCAAAAAAAATGAGACCGATATTTGGAGAAGAGAATAGTCTCTTAATA
CCTACCAGTAAACACTTTTGATAATAGACTTTTAGAGCAGTCCTTTACAG
AGTCCAGCAGTAGTGGCCTGATTTTCCAAGCCCACATAATTATATCGCCT
GCCAACGCCCATCTCATGGGCGTAGCCGTGGCTACCCACTAGTACGTGAT
GAAGCTGACTGTTTTTGTATACATGTTACGGTATGACGGTATCATATTAT
GGCGCTGCTTGCTTTCTCGTACGGGTCGTAAGTAGCTCCCCGCTCCCTGC
GGAGGGAAGGGGCGGGGAGTCATGGGTCGGCTTACATCTGCCAGGGCCTC
GTCCTGTCCAGCCTCCGACGCCACACCGGCCCATGACTCTGTGAACGCCC
GCCCGGATCTGGCCACGGTCGGAAACACACACGCCCATGCACCAGAGAGC
AACGGTGGACCTTTTTTTTATAATTATTTTTGCACACTATTTGATAGACC
GGCTTTTCCTAGGTCCGTCTGTGGTCACAAGGGATCATCCCGTCTCCCCC
CCCCCCGGCGCTCACCTTTGGTTTTTGCCCGCGCATGGGGTTTGGCCCTC
GGGCAGCTCGCCATTTTCTCGGATTGTGGTTACTCACGCTTTCGTGCCTA
CCGCAGCGGAGGTACTGTAGAGAAAATGTGCACATATCGCTCTGCCCGGA
TTCGAACCAGGGCCCACCGCCTTACCTAACGTTGGCGTACCAGTTCAACC
ACGGGGCGCGCGGCTTTATGGAGATACATACATTTGCTACCTGAGGCAAC
CCAAACCCTAAATCAGGCGTATTCCTCTCAGGTGGTGGAAATTTGAGTTG
TGGCGTTGCGTATACGGTTGGGTTCCGCCAACTCCAGCTGTCAAGGGGCG
CGTGTTGCGTTATTTTGTGGGGTTTCGTTTGTCTTCCGGTGGTGACACAT
GGAAACACTGAAGGTGGGGGAGACGCCAGACGCGATGCGATGTAACAAGC
GTTCCGCGGGAAGCGGTCCTTTGCCTTGTGTTGCTGCGTTACCGTTCGCG
ATGGCTCGTCGTTCTGCGCGATTCGCAAACGTCTGTTGGTTGTTGGTTTT
TGGTTTTTGGTTTTTAATTGATCGCAGGAAATGGCCGGTCTTTTTGTTTG
CTGCCGCGTGGATGGATGCGCGTGTACAGATGGCTGTGTTTCGTTTTTGG
CTCTCGGACTGCTTCCGTTGCGGCGAGGGAGGTCGCAACACGCCCGAGCG
CCTGCCTGACACACTTCGGAAGCTTTTGAGCATATCCATCCATGCGCATG
GTTATACAACTTTCGACGGTGCTGGGGATCGAAGACCCACTGGGCCGGGA
AGGAGGACGCGTGATATAGCTCGCCGCGAGATCGTGAGCGCGGCAGTAAC
ATCGTCCCGACATTTTTTTTGGGGGATGTTTTTGCCGTTCGACTCCCATC
GTCCAAAACTCCACTGACTTTGTGCGGTGCATGTCCGAAAAGCAAAGCGG
GTTCCTACATTGCCCTCTCCCCTAAAATGTACGTTGATTTCAGAAACATA
GAGCGGGCGTTGGGGTCCCACCTTTTCATGAGGGAAGATGGTCCAAGCTA
CACCCATGGATGCTCACTTGCTTCGTGTGATGCTATGGTGTCATGTCACG
TATGAGGTACTAGAGTCTTTGTCCTGAGCGATACCCCCCCCCCCCCCCCC
CCCCCACCCCCCAACCACCCACCCCCCCCACCACCCCCTCCCCCCGCCCC
GCCCACCATCTGCCACACCCGCTTTTGTTCTCTCTNNNNNNNNNNTGTGT
GTGTTTTGACTTTGTTGCCTTTCCGGTTTTGGGTTTTATTTTTTTTTTCC
CGTGGTACCCCCCCCCCCCCCCCCCGAAAACACTAAAAGCCCCATGACAT
ATCGGTTGGCGTCGCAAACGCGAGGATGATGTCTAGCAGCTGGTGTATTT
CTCGTCCTTGCGAAACGCAGCCTGGCCGGCAAACCGAAAACCCGTCATAT
CGCTCCATCCCGGTATTGTTGGGACGCGTGGTCTATGTCCGTCTGGATAC
GATATGCGTTTAACATACGCCCCGACGCCCCCCCCCTACCCCCCTGTGTC
TATGTCCGTCTGGATACGACATGCGTTTAACATACCCTCCCCCCCCCCCT
CCTTTCCCCGACGCTCACAAAACATACACACGAACGTCTCCCGCAGCGCT
TTTGGGCGTATGGAAGGACTCAAGGTGCCCTTTCGATCTTCCAGCCAGCA
ATACTCGCTCGATTCCTTCTCCTGTCGCTTCGTGCGCGGCTCCTCCATGA
GGCCTTCCCCCGCCAAGGAAGGAGACCCCTCGTTAGCTGACATCGCCGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9271:5003..7652+

>mRNA_S-dermatodea_contig9271.17329.1 ID=mRNA_S-dermatodea_contig9271.17329.1|Name=mRNA_S-dermatodea_contig9271.17329.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig9271:5003..7652+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCCAGCAGTGGCTTCGAGAGCGGTGCGTGCCAGTGGTGGCGACGGT
CGTGACGGAGGATGCCGAGCTCACCTGCCGAAAGAACGACCTCAGCTTCG
AGCAGCTCGTCAGATGCTCCAGCAGTGGCTTCGAGAGCGGTGCGTGCCAG
TGGTGGCGACGGTCGTGACGGAGGATGCCGAGCTCACCTGCCGAAAGAAC
GACCTCAGCTTCGAGCAGCTCGTCAGCGCTTTTGGGCGTATGGAAGGACT
CAAGGTGCCCTTTCGATCTTCCAGCCAGCAATACTCGCTCGATTCCTTCT
CCTGTCGCTTCGTGCGCGGCTCCTCCATGAGGCCTTCCCCCGCCAAGGAA
GGAGACCCCTCGTTAGCTGACATCGCCGCGCGCTTTTGGGCGTATGGAAG
GACTCAAGGTGCCCTTTCGATCTTCCAGCCAGCAATACTCGCTCGATTCC
TTCTCCTGTCGCTTCGTGCGCGGCTCCTCCATGAGGCCTTCCCCCGCCAA
GGAAGGAGACCCCTCGTTAGCTGACATCGCCGCG
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