mRNA_S-dermatodea_contig9245.17303.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9245.17303.1
Unique NamemRNA_S-dermatodea_contig9245.17303.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9245.17303.1 vs. uniprot
Match: D7FQU6_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQU6_ECTSI)

HSP 1 Score: 320 bits (819), Expect = 4.630e-94
Identity = 151/177 (85.31%), Postives = 168/177 (94.92%), Query Frame = 1 
Query:    4 GLWCQGMEQLDFCFFSLDRLLRRHCPSLRQHLSDEGVELNMFTSRWFVTLFTCTDVFGRGTSRKILDMFMVEGWPLLFKLSLGVLLEMRPLLEPTDMEGILRITKFPRAHLFGLRRDGTGRRVAGATFEEATHGSLCETIRAGQMVEHALLLHVSEETLEQHRHDYHLQKISSPGSD 534
            GLWCQG+E+LD CFFSL+RLLRRHCPSLRQHLSDEGVEL+MFTSRWFVTLFT TDVFGRGTSRKILDMF+VEGWPLLFK+SLGVLLEMRPLLEP DMEGIL++TKFPRAHLFGLRRDG+GR +AGA+FEEAT GSLCE+IRAGQMVEHALLLH+S ETLEQH+ +Y LQK ++PGSD
Sbjct: 1275 GLWCQGLERLDLCFFSLERLLRRHCPSLRQHLSDEGVELSMFTSRWFVTLFTSTDVFGRGTSRKILDMFLVEGWPLLFKMSLGVLLEMRPLLEPADMEGILKVTKFPRAHLFGLRRDGSGRHIAGASFEEATQGSLCESIRAGQMVEHALLLHISGETLEQHQREYRLQKHAAPGSD 1451
[Close]
BLAST of mRNA_S-dermatodea_contig9245.17303.1 vs. uniprot
Match: A0A4D9CZ65_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ65_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.540e-15
Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:    7 LWCQGMEQLDFCFFSLDRLLRRHCPSLRQHLSDEGVELNMFTSRWFVTLFTCTDVFGRGTSRKILDMFMVEGWPLLFKLSLGVLLEMRPLLEPTDMEGILRITKFPRAHLFGL---RRDG 357
            +W +GM +L  CF   DRLLR   P L  H  + GV + MF+S+WFVTL+   D        ++ D+F+VEGW ++F +++ ++  +   L   D+E ILR+ + PRA L      R DG
Sbjct: 1020 VWMEGMPRLKACFAVFDRLLRIRTPGLHAHFVETGVHVAMFSSKWFVTLYANLDTLPPQAVLRVWDVFLVEGWSVIFGVAVSLIEMLEGQLRDLDLEDILRLVQDPRAALLACSTTRADG 1139
[Close]
BLAST of mRNA_S-dermatodea_contig9245.17303.1 vs. uniprot
Match: A0A225WJL6_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WJL6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.320e-14
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:    1 QGLWCQGMEQLDFCFFSLDRLLRRHCPSLRQHLSDEGVELNMFTSRWFVTLFTCTDVFGRGTSRKILDMFMVEGWPLLFKLSLGVLLEMRPLLEPTDMEGILRITKFPRAHL 336
            + L+  GM  L       + L   H P L +H   EGV +  F +RWF+T F+  +        ++LD+F+++GW ++F +SL +L E++  L   DMEGILR+ +FPR+H+
Sbjct:  722 KNLYEPGMAVLQPYLSKFELLFSTHMPELYEHFQAEGVHVATFCTRWFLTFFSSFETLAPTLVTRLLDIFIIDGWRIMFSVSLVILDELQQQLMQCDMEGILRVLQFPRSHM 833
[Close]
BLAST of mRNA_S-dermatodea_contig9245.17303.1 vs. uniprot
Match: A0A2D4BZI8_PYTIN (Rab-GAP TBC domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZI8_PYTIN)

HSP 1 Score: 80.1 bits (196), Expect = 1.440e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 1 
Query:    1 QGLWCQGMEQLDFCFFSLDRLLRRHCPSLRQHLSDEGVELNMFTSRWFVTLFTCTDVFGRGTSRKILDMFMVEGWPLLFKLSLGVLLEMRPLLEPTDMEGILRITKFPRAHLFGL 345
            + L+  G+  L   F   +    R  P L  H   EGV +  F +RWF+T F+  + FG     ++LD+F+++GW ++F ++L VL E+   L  +DME ILR+ + PRA L  L
Sbjct:   76 RNLYEPGLTVLQPLFVRFEAFFSRQKPELFAHFQREGVPVAAFAARWFLTFFSTFETFGPTLVIRLLDLFVIDGWRVIFSMALVVLDELEHELLASDMEAILRLLQLPRARLVEL 190
[Close]
BLAST of mRNA_S-dermatodea_contig9245.17303.1 vs. uniprot
Match: D0MQN4_PHYIT (Rab-GAP TBC domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MQN4_PHYIT)

HSP 1 Score: 84.0 bits (206), Expect = 1.640e-13
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:    1 QGLWCQGMEQLDFCFFSLDRLLRRHCPSLRQHLSDEGVELNMFTSRWFVTLFTCTDVFGRGTSRKILDMFMVEGWPLLFKLSLGVLLEMRPLLEPTDMEGILRITKFPRAHL 336
            + L+  GM  L       + L   H P L  H   EGV +  F +RWF+T F+  +        ++LD+F+++GW ++F +SL +L E++  L   DMEGILR+ +FPR ++
Sbjct:  702 RNLYEPGMAVLQPYLSKFEELFSTHMPELHMHFQKEGVHVATFCTRWFLTFFSSFETLAPTLVTRLLDIFIIDGWRIMFSVSLVILDELQQQLLKADMEGILRVLQFPRCYM 813
[Close]
BLAST of mRNA_S-dermatodea_contig9245.17303.1 vs. uniprot
Match: A0A3M6V6V8_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6V8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.730e-13
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:    1 QGLWCQGMEQLDFCFFSLDRLLRRHCPSLRQHLSDEGVELNMFTSRWFVTLFTCTDVFGRGTSRKILDMFMVEGWPLLFKLSLGVLLEMRPLLEPTDMEGILRITKFPRAHL 336
            Q L+  GM  L       + LL  H P L  H   EGV +  F +RWF+T F+  +        ++LD+F+++GW ++F  SL +L E++  L   DMEGILRI +FPR+++
Sbjct:  796 QNLYEPGMAVLQPYLSKFELLLSIHMPKLFSHFQAEGVHVAAFCTRWFLTFFSSFEALAPTLVTRLLDIFIIDGWRIMFSFSLVILDELQKQLLKCDMEGILRILQFPRSYM 907
[Close]
BLAST of mRNA_S-dermatodea_contig9245.17303.1 vs. uniprot
Match: M4B4F2_HYAAE (Rab-GAP TBC domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B4F2_HYAAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.770e-13
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:    1 QGLWCQGMEQLDFCFFSLDRLLRRHCPSLRQHLSDEGVELNMFTSRWFVTLFTCTDVFGRGTSRKILDMFMVEGWPLLFKLSLGVLLEMRPLLEPTDMEGILRITKFPRAHL 336
            Q L+  GM  L       + L   H P L  H   EGV +  F +RWF+T F+  +        ++LD+F+++GW ++F +SL +L E++  L   DMEGILRI +FPR+ +
Sbjct:  112 QNLYEPGMIVLQPYLSKFELLFSTHMPKLYSHFMAEGVHVATFCTRWFLTFFSSFETLAPTLVIRLLDIFIIDGWRIMFSVSLVILDELQQQLLKHDMEGILRILQFPRSFM 223
[Close]
BLAST of mRNA_S-dermatodea_contig9245.17303.1 vs. uniprot
Match: A0A484DSH9_BRELC (Rab-GAP TBC domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSH9_BRELC)

HSP 1 Score: 83.6 bits (205), Expect = 2.230e-13
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:    4 GLWCQGMEQLDFCFFSLDRLLRRHCPSLRQHLSDEGVELNMFTSRWFVTLFTCTDVFGRGTSRKILDMFMVEGWPLLFKLSLGVLLEMRPLLEPTDMEGILRITKFPRAHL 336
             L+  GM  L     +   L   H P L  HL  EGV + MF +RWF+T F+  +        ++L++F+++GW ++F +SL +L E++  L   DMEGILR+ K PR H+
Sbjct:  737 NLYEPGMAVLQPNLLTFQTLFSTHMPELFAHLESEGVHVAMFCTRWFLTFFSAFETLVPTLVTRVLEIFIIDGWRIIFSVSLVILNELQHELLRCDMEGILRVLKSPRCHM 847
[Close]
BLAST of mRNA_S-dermatodea_contig9245.17303.1 vs. uniprot
Match: A0A0W8DLX5_PHYNI (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DLX5_PHYNI)

HSP 1 Score: 82.8 bits (203), Expect = 2.670e-13
Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:    1 QGLWCQGMEQLDFCFFSLDRLLRRHCPSLRQHLSDEGVELNMFTSRWFVTLFTCTDVFGRGTSRKILDMFMVEGWPLLFKLSLGVLLEMRPLLEPTDMEGILRITKFPRAHL 336
            + L+  GM  L       + L   H P L  H  +EGV +  F +RWF+T F+  +        ++LD+F+++GW ++F +SL +L E++  L  +DMEGILR+ +FPR ++
Sbjct:  394 RNLYEPGMAVLQPYLSKFEVLFSTHMPELYTHFQNEGVHVATFCTRWFLTFFSSFETLAPTLVTRLLDIFIIDGWRIMFSVSLVILDELQQQLLKSDMEGILRVLQFPRCYM 505
[Close]
BLAST of mRNA_S-dermatodea_contig9245.17303.1 vs. uniprot
Match: V9F9L7_PHYPR (Rab-GAP TBC domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=V9F9L7_PHYPR)

HSP 1 Score: 82.8 bits (203), Expect = 3.940e-13
Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:    1 QGLWCQGMEQLDFCFFSLDRLLRRHCPSLRQHLSDEGVELNMFTSRWFVTLFTCTDVFGRGTSRKILDMFMVEGWPLLFKLSLGVLLEMRPLLEPTDMEGILRITKFPRAHL 336
            + L+  GM  L       + L   H P L  H  +EGV +  F +RWF+T F+  +        ++LD+F+++GW ++F +SL +L E++  L  +DMEGILR+ +FPR ++
Sbjct:  735 RNLYEPGMAVLQPYLSKFEVLFSTHMPELYTHFQNEGVHVATFCTRWFLTFFSSFETLAPTLVTRLLDIFIIDGWRIMFSVSLVILDELQQQLLKSDMEGILRVLQFPRCYM 846
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9245.17303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQU6_ECTSI4.630e-9485.31Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
A0A4D9CZ65_9STRA3.540e-1537.50Rab-GAP TBC domain-containing protein n=2 Tax=Mono... [more]
A0A225WJL6_9STRA5.320e-1435.71Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A2D4BZI8_PYTIN1.440e-1335.65Rab-GAP TBC domain-containing protein n=1 Tax=Pyth... [more]
D0MQN4_PHYIT1.640e-1334.82Rab-GAP TBC domain-containing protein n=2 Tax=Phyt... [more]
A0A3M6V6V8_9STRA1.730e-1337.50Rab-GAP TBC domain-containing protein n=2 Tax=Pero... [more]
M4B4F2_HYAAE1.770e-1336.61Rab-GAP TBC domain-containing protein n=1 Tax=Hyal... [more]
A0A484DSH9_BRELC2.230e-1336.94Rab-GAP TBC domain-containing protein n=1 Tax=Brem... [more]
A0A0W8DLX5_PHYNI2.670e-1334.82Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
V9F9L7_PHYPR3.940e-1334.82Rab-GAP TBC domain-containing protein n=16 Tax=Phy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9245contigS-dermatodea_contig9245:4882..8252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.8
Seed ortholog evalue3.3e-81
Seed eggNOG ortholog2880.D7FQU6
Preferred nameFASTKD3
KEGG koko:K19944
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size1349
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9245.17303.1prot_S-dermatodea_contig9245.17303.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9245 5694..8231 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925396.0565422-UTR-S-dermatodea_contig9245:4881..56931622925396.0565422-UTR-S-dermatodea_contig9245:4881..5693Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9245 4882..5693 -
1694079905.1867256-UTR-S-dermatodea_contig9245:4881..56931694079905.1867256-UTR-S-dermatodea_contig9245:4881..5693Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9245 4882..5693 -
1622925396.122476-UTR-S-dermatodea_contig9245:8231..82521622925396.122476-UTR-S-dermatodea_contig9245:8231..8252Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9245 8232..8252 -
1694079905.2422867-UTR-S-dermatodea_contig9245:8231..82521694079905.2422867-UTR-S-dermatodea_contig9245:8231..8252Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9245 8232..8252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925396.075699-CDS-S-dermatodea_contig9245:5693..57561622925396.075699-CDS-S-dermatodea_contig9245:5693..5756Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9245 5694..5756 -
1694079905.2004535-CDS-S-dermatodea_contig9245:5693..57561694079905.2004535-CDS-S-dermatodea_contig9245:5693..5756Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9245 5694..5756 -
1622925396.0867565-CDS-S-dermatodea_contig9245:6469..66611622925396.0867565-CDS-S-dermatodea_contig9245:6469..6661Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9245 6470..6661 -
1694079905.2112095-CDS-S-dermatodea_contig9245:6469..66611694079905.2112095-CDS-S-dermatodea_contig9245:6469..6661Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9245 6470..6661 -
1622925396.0994072-CDS-S-dermatodea_contig9245:7484..75711622925396.0994072-CDS-S-dermatodea_contig9245:7484..7571Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9245 7485..7571 -
1694079905.2230449-CDS-S-dermatodea_contig9245:7484..75711694079905.2230449-CDS-S-dermatodea_contig9245:7484..7571Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9245 7485..7571 -
1622925396.1117246-CDS-S-dermatodea_contig9245:8057..82311622925396.1117246-CDS-S-dermatodea_contig9245:8057..8231Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9245 8058..8231 -
1694079905.233446-CDS-S-dermatodea_contig9245:8057..82311694079905.233446-CDS-S-dermatodea_contig9245:8057..8231Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9245 8058..8231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9245.17303.1

>prot_S-dermatodea_contig9245.17303.1 ID=prot_S-dermatodea_contig9245.17303.1|Name=mRNA_S-dermatodea_contig9245.17303.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp
MEQLDFCFFSLDRLLRRHCPSLRQHLSDEGVELNMFTSRWFVTLFTCTDV
FGRGTSRKILDMFMVEGWPLLFKLSLGVLLEMRPLLEPTDMEGILRITKF
PRAHLFGLRRDGTGRRVAGATFEEATHGSLCETIRAGQMVEHALLLHVSE
ETLEQHRHDYHLQKISSPGSD*
back to top

mRNA from alignment at S-dermatodea_contig9245:4882..8252-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9245.17303.1 ID=mRNA_S-dermatodea_contig9245.17303.1|Name=mRNA_S-dermatodea_contig9245.17303.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3371bp|location=Sequence derived from alignment at S-dermatodea_contig9245:4882..8252- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGGCTATGGTGCCAGGGCATGGAGCAGCTTGACTTTTGCTTCTTCTC
GCTCGACCGCTTGCTGCGGCGCCACTGCCCGTCGCTGAGGCAGCATCTCT
CCGACGAGGGCGTGGAGCTGAACATGTTCACGAGCCGGTGGTTCGTTACC
CTCTTCACGTGCACGGATGTTTTCGGCCGTGGCACGTCGCGAAAGGTGTG
CCTCCTGATCGATGGATGGAAACGATGCCGCGCTCGTGTGGGGGCTGTTG
TATACGGATGGATGTGTGTTGGCGGGTTGGTGACTGTTGATGCTGCCAGA
AGAAGCAAAAGCGTTATGTTTGCACTTGGTTTGGTGTGTATTACTACGGG
TTTTTCCCGCCAGATGCTAGTTTTCTGTCTACCTATGTGTCTTAAGAGCC
ACCGTCGGGATAGCGGTTTGCAGGCATATCCATCTCTACAGATCGTCGCC
GTCGGCACCCATGACTGCCGGCGGGCGTGCACGTCGCTTAAAACGGCTCC
CGTGTCTTGGACAGCATGTAAGCGTATGTCATGCCTGACGCAAATCGCGC
GGCTGAATGCAAACCAGCGCCCATTCCTCGACAAGTGTGGAGCGTTGTAC
GCGTAGCGAATGACTTCACCCGGTTTTTTCTGTTACCCTTAACCGAACGA
CGTGCTATGGTACTGCCGTCGGACCGGACAGATCCTGGACATGTTCATGG
TGGAAGGGTGGCCGCTGCTGTTCAAGCTGTCTCTCGGGGTGCTGCTGGAG
ATGCGGCCGCTTCTAGAGGTGTGTGCGATTTTCCTTCCGCCACACTTTCG
GCTTGCGGGTTCAGTCTGCCCCGGCGGAGGGGAACGGGATGGGCGCAAGC
TTCGGTTGGTTGGTGTTGGTGGGTTGTGTTTGGCGTTGTCAGCGGCGGTG
CAGTGTGTGCACGGCACAGCACCCTGATCGACATTGACAGCACGAAACAT
ACTTTCTGGGTATTTGGTATCTTGCCCATGGCGATTCTATACCCCGCGCG
CAGGGTCGGCCGGGAAAGTGAAGCGGCGCAGCAGGCCTTGATTTCTCGAA
GCGCTGTCCGGCCCGGCTCGCCGATGTCGCTTGTTTGCGACCGCATGTCT
TCAAAGAGAGCATCCCTGTTCTGCGCCGTGGATGTTGTGGTTCTCATCAC
CCACAATGGAGAATTTCGTTACATGCATGATGATACAAAAAATACTAGAG
CCATCGTACGCATATCATATTAAATCAACTCCCGCCAGGTAACTCTGTGC
CTCTCGCCCATACCCATCCGGCGTTCTGATGGCTTGCTGCCATCGTCGTG
CTGTATAATACCGTTGCTACGAGTCTCTTTAAACACTCAAGCACATCCCG
GCCGCTGCTTCGCAGCAGCTTCGGTGATTTATGTGGCGGCACTTTCCCAC
ACTGGCGCCCGCCCCCCCCCCTCTAAAGATTAAAATATTTCGAAGACAGC
GAGCGCTGCTCCCCCCCCCCCCCCCACCCCCTCCCCTTTCCCCTACCCCT
ACCCCTACCCCTACCCCTCCCAACCAAAACCTAACACCAGTTCTTCCGTG
TTGTCCGTCCTCCGCAACCCTGGTCGTTGCTTGTCGAACAGCCCACCGAC
ATGGAAGGCATTTTACGAATCACCAAATTCCCCCGCGCGCATCTGTTCGG
GCTGAGGAGGGATGGGACGGGCAGGCGGGTAGCGGGGGCGACCTTCGAGG
AGGCGACGCATGGATCCCTCTGCGAGACGATAAGGGCGGGGCAGATGGTC
GAGCATGCGCTCCTGCTGCACGTGTCCGAGGAGGTGAGGGGGAGGGGAGG
CGCGGGGGGGGGGGGGCACTTATCGAAATTTGGGGGTCATTTTTGCCGCT
CGTGGTAAACTGAGATGTCGACCGTACTAGTGCTTGTGTTTGGGGTGGAT
TGGGGGAGTATTGTTGTAGAATTTCCGTAACGGTCGCCAACCCTGCGGGA
GGCATGCTACGACAATAAGCGCGTTGTTGTCGGGAGTAAGTTGTGCTGTA
CGCGTGCTTGTTGCACGGCATGTACGATGTGCCTTGTGTGAGCAATAGTG
GTGTTTTCTTGTAGATAAGTTTTGCGGCATTTCCCCCCAATGGCGAGCAC
GGCAGCATCCGCCAGTGTGCCGCCAGTGCTTCTGAACCGGTCTCTACGCG
AGGGGAGTTTGTGTTATTGTTTTTCGTTCATTTTATTCGCCCTGAAATAA
TTCAGATTTCTAGGCACGAATTGGTTTATTGAATTGATTCCTAAGACTAA
TTTATTCGATTAGTGGGTGGTTGGTTGATGGATTGATTGTCAAAATTTCA
AAACCGACAGCGGCCCCCCAATGGTCGCCCGTCCCGCTCGTGGTCAGAGG
ATAAATAGATAAATCGAAAAATCTACTTAATTCATCAAGTACTCTGTAGT
TTGCGATGCCCACGTCTGTTTGACAACAATGTCCCTCCCTGCCGATCCGC
GCGCTGCCTCGTCTGCTCCGCACGCCCCACTTTTTTTCTGATTTAGACCC
TGGAACAACATCGACACGATTATCACCTCCAGAAAATTTCCTCGCCTGGG
TCGGACTAAATGTTGGACTCAAAGCAAGGTTCGCTGTACATATACATATT
GCGGGTGTATGCGGGCAGTGCGGTGTGTTTGATTCGGCAGCGTTTTGTTT
GTTTTTCCGGTTGAGCCCTTCGTCACACGACTGACTTTCCCTTATTTAGC
TGTACAATGCGGTTGGTACATACTTCTGTATCCGTGCTGGTCCTTCCAAT
GTGGGGGGGGGCAACGGCGGCTGGCAGTTTGAGAGTGCAGCGTTTTACTG
TAGTTGTTTTTGAAATTGTTGGTGGCATGGTCTGCCCCCCGAGAGACTCA
GCAGCTGAGGGCGGTTGTGTGTGTGTCATGATTAACGGTTGTGTCTTGGG
TTTGGTGTCCTGGATGGATATAATACACGCAAGCGTTGTGAAGGGCCTCT
GGTTGTGCCGTGCGGCTTTAGGACTCTCTCGCCCGAGAACGAGCGTCGTG
GCTGATGTATCAGTGTGCTCGGAGTATAGCGGCCTGTTCTGTAGAATTAT
TTATCCCATCCCGTCCGCGTCGCATGCGAAATGGGGTATCATACAGAGTA
CAGGTATCATAGTAGATGTTGAAAAATGCGACGAGCATGGCCTTAAACCT
CTCTGCTTGATGCATACATAGAGTCCGAGGGTAGGCGAGTACGAAATAGA
TACGGCAGCTGTTGCCTTTGTGTGTTGTGTTGGCAACGCGATCGTCATGA
ACAAAAAAAAATTGCTGAGCTTCCTCCGATCTCGAAGGCGGCGACGCTTA
CCTTAAAATACACCTATTAATAGTACGCGCAGGGAACAGGGTGCGATGCC
TTCACCTGTATGGCGTCTGCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9245:4882..8252-

>mRNA_S-dermatodea_contig9245.17303.1 ID=mRNA_S-dermatodea_contig9245.17303.1|Name=mRNA_S-dermatodea_contig9245.17303.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at S-dermatodea_contig9245:4882..8252- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGCAGCTTGACTTTTGCTTCTTCTCGCTCGACCGCTTGCTGCGGCG
CCACTGCCCGTCGCTGAGGCAGCATCTCTCCGACGAGGGCGTGGAGCTGA
ACATGTTCACGAGCCGGTGGTTCGTTACCCTCTTCACGTGCACGGATGTT
TTCGGCCGTGGCACGTCGCGAAAGATGGAGCAGCTTGACTTTTGCTTCTT
CTCGCTCGACCGCTTGCTGCGGCGCCACTGCCCGTCGCTGAGGCAGCATC
TCTCCGACGAGGGCGTGGAGCTGAACATGTTCACGAGCCGGTGGTTCGTT
ACCCTCTTCACGTGCACGGATGTTTTCGGCCGTGGCACGTCGCGAAAGAT
CCTGGACATGTTCATGGTGGAAGGGTGGCCGCTGCTGTTCAAGCTGTCTC
TCGGGGTGCTGCTGGAGATGCGGCCGCTTCTAGAGATCCTGGACATGTTC
ATGGTGGAAGGGTGGCCGCTGCTGTTCAAGCTGTCTCTCGGGGTGCTGCT
GGAGATGCGGCCGCTTCTAGAGCCCACCGACATGGAAGGCATTTTACGAA
TCACCAAATTCCCCCGCGCGCATCTGTTCGGGCTGAGGAGGGATGGGACG
GGCAGGCGGGTAGCGGGGGCGACCTTCGAGGAGGCGACGCATGGATCCCT
CTGCGAGACGATAAGGGCGGGGCAGATGGTCGAGCATGCGCTCCTGCTGC
ACGTGTCCGAGGAGCCCACCGACATGGAAGGCATTTTACGAATCACCAAA
TTCCCCCGCGCGCATCTGTTCGGGCTGAGGAGGGATGGGACGGGCAGGCG
GGTAGCGGGGGCGACCTTCGAGGAGGCGACGCATGGATCCCTCTGCGAGA
CGATAAGGGCGGGGCAGATGGTCGAGCATGCGCTCCTGCTGCACGTGTCC
GAGGAGACCCTGGAACAACATCGACACGATTATCACCTCCAGAAAATTTC
CTCGCCTGGGTCGGACTAAACCCTGGAACAACATCGACACGATTATCACC
TCCAGAAAATTTCCTCGCCTGGGTCGGACTAA
back to top