mRNA_S-dermatodea_contig9224.17289.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9224.17289.1
Unique NamemRNA_S-dermatodea_contig9224.17289.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9224.17289.1 vs. uniprot
Match: D7FSN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN1_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.480e-31
Identity = 71/134 (52.99%), Postives = 86/134 (64.18%), Query Frame = 1 
Query:    1 EPSAISPNAFNVMAAQYTDDACEEPTGVEHVVSGSAVSAPGFSTEACFPGE----VGTFGLPYLSECLSDGKVLMNLFGIGDDACEGELYAEILTTFTSDWPREPDWRIVADRVIRETTSHSCFPIAGLYYRAM 390
            EP A+SPNAFNV+AAQY+DD C  PTGV+HVVSG  VSAPGFSTE CFP E    V    LP+LSECLSDG  ++ LFG+ D  C GE+  E  T FT      PD R +AD       + SC+ +   +YRA+
Sbjct:  165 EPFALSPNAFNVVAAQYSDDKCTVPTGVDHVVSGYDVSAPGFSTEGCFPPESDPEVPAPSLPFLSECLSDGSAVIQLFGLSDLTCSGEVQLEYHTNFTPHMSSGPDMRRMAD------AADSCYLVGDYHYRAV 292
[Close]
BLAST of mRNA_S-dermatodea_contig9224.17289.1 vs. uniprot
Match: A0A6H5K9P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.870e-12
Identity = 50/128 (39.06%), Postives = 62/128 (48.44%), Query Frame = 1 
Query:    1 EPSAISPNAFNVMAAQYTDDACEEPTGVEHVVSGSAVSAPGFSTEACFPGEVGTFGLPYLSECLSDGKVLMNLFGIGDDACEGELYAEILTTFTSDWPREPDWRIVADRVIRETTSHSCFPIAGLYYR 384
            EP AISPNAFNV+AA+Y+DD C  PTGV+HVVSG  VSA GFSTE CF                              +  + E+  E  T FT      PD R +AD       + SC+ +   Y+R
Sbjct:  244 EPIAISPNAFNVVAARYSDDKCTVPTGVDHVVSGCDVSASGFSTEGCFH----------------------------QNRIQREVQLEYHTNFTPHMSSGPDMRRMAD------AADSCYLVGDYYHR 337
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9224.17289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSN1_ECTSI3.480e-3152.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9P6_9PHAE1.870e-1239.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9224contigS-dermatodea_contig9224:2198..5421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2817
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9224.17289.1prot_S-dermatodea_contig9224.17289.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9224 4157..5385 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925395.0518148-UTR-S-dermatodea_contig9224:2197..41561622925395.0518148-UTR-S-dermatodea_contig9224:2197..4156Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9224 2198..4156 -
1694079904.5382416-UTR-S-dermatodea_contig9224:2197..41561694079904.5382416-UTR-S-dermatodea_contig9224:2197..4156Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9224 2198..4156 -
1622925395.0880163-UTR-S-dermatodea_contig9224:5385..54211622925395.0880163-UTR-S-dermatodea_contig9224:5385..5421Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9224 5386..5421 -
1694079904.5692582-UTR-S-dermatodea_contig9224:5385..54211694079904.5692582-UTR-S-dermatodea_contig9224:5385..5421Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9224 5386..5421 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925395.064261-CDS-S-dermatodea_contig9224:4156..46311622925395.064261-CDS-S-dermatodea_contig9224:4156..4631Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9224 4157..4631 -
1694079904.548892-CDS-S-dermatodea_contig9224:4156..46311694079904.548892-CDS-S-dermatodea_contig9224:4156..4631Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9224 4157..4631 -
1622925395.0755286-CDS-S-dermatodea_contig9224:5038..53851622925395.0755286-CDS-S-dermatodea_contig9224:5038..5385Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9224 5039..5385 -
1694079904.5589032-CDS-S-dermatodea_contig9224:5038..53851694079904.5589032-CDS-S-dermatodea_contig9224:5038..5385Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9224 5039..5385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9224.17289.1

>prot_S-dermatodea_contig9224.17289.1 ID=prot_S-dermatodea_contig9224.17289.1|Name=mRNA_S-dermatodea_contig9224.17289.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=274bp
MAAQYTDDACEEPTGVEHVVSGSAVSAPGFSTEACFPGEVGTFGLPYLSE
CLSDGKVLMNLFGIGDDACEGELYAEILTTFTSDWPREPDWRIVADRVIR
ETTSHSCFPIAGLYYRAMSCTMDVVTIGEATAPTTAPATPSPSSSSTPAL
EPATTVAPSTGVLESQVPVTGAPVSLSLESTPAPAFAREVAPVSGSPATT
PAATTTAPSGAEIDTPSPSGGNSQETAATTTPATGVEAGVNAAIRSVGSG
GYIEVVTLSLCGLAAFFWVTAGF*
back to top

mRNA from alignment at S-dermatodea_contig9224:2198..5421-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9224.17289.1 ID=mRNA_S-dermatodea_contig9224.17289.1|Name=mRNA_S-dermatodea_contig9224.17289.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3224bp|location=Sequence derived from alignment at S-dermatodea_contig9224:2198..5421- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCCGTCCGCAATATCGCCGAATGCGTTCAACGTCATGGCGGCGCAGTA
CACCGACGACGCGTGCGAAGAGCCCACCGGCGTGGAACACGTTGTCTCGG
GGAGCGCCGTAAGCGCGCCTGGATTTTCTACCGAAGCTTGCTTCCCTGGA
GAAGTCGGAACGTTCGGACTCCCGTACCTGAGCGAGTGTCTATCCGACGG
CAAGGTTCTGATGAATTTATTTGGCATTGGAGATGACGCGTGCGAAGGGG
AGCTGTACGCTGAAATCTTGACGACCTTCACGAGCGACTGGCCGCGCGAG
CCCGACTGGCGCATTGTCGCGGACCGCGTGATCAGGGAAACGACGAGCCA
CTCTTGCTTCCCGATCGCCGGCTTGTACTACCGGTAAGAGACGACTCCCC
GGCCACCTCTGCTGTTGCTCCACGATTGGGTGGTGCACTATTTGATGGTG
TCTGTTAAGTATGAGTCTTAACAACTGAGCTCAGTCAGCGCTGACTGAAC
CCAGTGGTGAAGATTATGTTAGCACTTAACAAAAGTATTTTGTGGCTAGC
GCCGTAGGTAAGATTAACCTGCGAAACAATATAATCCGGGGAAAGTCTGC
TGGCAAGCCATTGGACCCGGGGTCAATCCTTCTCTATGTTCAGGGTGCGA
GCGCGCAAAGTCCCATAGTACTTTGATTGAATAAAATTCACAATGAATAG
TGGCCCACCTCGCTCAGCGACATATACATTGAACTAACCACTACTTCGCC
CTCTCCTCCCCCCACCTTCCGTTTTCTCGACCACCCTCAGTGCCATGTCC
TGTACAATGGATGTCGTTACTATCGGCGAAGCAACGGCACCGACAACCGC
CCCCGCCACTCCCTCACCGTCCTCCTCTTCGACACCCGCTCTCGAGCCTG
CCACAACGGTCGCACCCTCGACCGGTGTACTCGAATCCCAGGTACCTGTT
ACAGGAGCACCGGTCTCCCTCAGCCTCGAATCGACCCCTGCCCCTGCATT
CGCCCGCGAAGTCGCACCGGTGTCCGGTAGCCCAGCGACAACGCCCGCTG
CTACGACAACTGCCCCATCTGGTGCAGAAATCGATACACCATCGCCCAGC
GGAGGAAACTCACAGGAGACGGCCGCGACCACGACCCCTGCCACGGGGGT
AGAGGCCGGGGTGAATGCGGCGATCAGATCAGTTGGGAGCGGGGGCTACA
TCGAGGTGGTCACCTTGTCGTTGTGTGGATTGGCGGCTTTCTTTTGGGTG
ACCGCAGGGTTCTAGCGCGTTGTAAGTCAGCGTACCGGGCTATGGCCTGC
TGCTGGATATTTTCATGCATGGAGCTCTTGAGCTCTTTTCAGGCAATGTG
TTGATATACATGCCGGTATCCATTTTATCCATTTCTTTGTCACGTCTGTT
TTGATCCCCACCTGTTTATCATTGTGATACTAAGACGGGGAAGAGGTACA
CACGTACATCCGCAATGACACCAGTAGTACAACAATTCGGCAGAACGTGC
CCAGAACCCCTCTTCGTTTGCGTGGCCAAGCGACGGGTCCGGAGCCTGAA
GCGTTGCCTAGGAGTCGATTTTCGCTTTGAACCCTTCAAGCTGGGCATTC
TGCGAGAAGGCTGCTACGATATAACTTTCGACCGTGCAAGTCTCCCGGAC
GAGTTTCTGTTAGGATTTGGGTGGCTATCCGAAACCGGGGCGTGTTCAGT
GTATTATAGTTGTCCTTGTTTATTTTTCCACCGTGGGTGTACCAGTATAT
CGGTTCATGAGGGCTATGATGCGGGGAGGGGGGGGTGAAATACTTGCGCA
GAATTGCCTCGTATGTGTGGTTGTGTTGGCCCCCTACCTCCTCCTCGAAA
ATAACGTAGCATGATTCGTGAAGGGAGTCCTAGTACCATCTTTTTTTGAG
CAAGACATCTTCAGAACCCCAATAAGTGTGGAGCGTGAGGGGGGTAACCG
GGGAAGTCATGAGGTTTTATCTGTGCGCAGTGCTGCCATTTATGGCATCA
AATGTTCGCTGGCAACGTCGTGTGATTTAGATGCAAGGTTGGTGTTGGTG
TTGTAACCCCCCCTGCGCCCACCGCTGTTGTGTACCAGGTAAACGTTAGT
TAGGTATTCTGCGCTTGATCGCAACGGTTTTTGCTTTATGGGTTGAATTT
CTCGCAGTTGCCCACATTGGATTCGCATGTTGTTTTTGTGGTGTTTTCTT
TACCCCAGATCAGCAGTTCTCAAAGAAAAACCGACTTTGTGCTCTGGCTC
TGGCCAGTTCCTTGTTGCGCGGAGCTTTTCAAAGGATAGGTTGTGGCTGG
GCTACATGTAGGAAAATATGCCACGCATGTCGCTTCCAGTTGTTGTGCCG
AAAAGACGGACGACGCGAGAAAAGTGAGACCATCACAGTAGGGACCGGTC
GCCGTAGACAGCCGAATCGACAGTTGGAAGGGACCAGGGGCGCGTCGTGC
GTTCGTATCAATCTGGTTGGCATTCCAAAATACACTCCTAGGTAAGTACA
TATATTACTTGCTAGGTAGATTCGACTTTAGAACCACTCCGGATCGGAGT
TCGGAAATAGCAAGAACCGTAGAGGTTTGTTTAGGGTATTGGGTCAGTTC
GTTGCCGTGGAATTAGAAGATTCCCTAGAGCGAGCGGCAGGAGCCACGCT
TGTCGGACACCCATCTATGCCGTGCAGAGTCAAAATGATGAGGCTTGCCG
GGAACCGTAGTTTCTGGCGTCGGGGACACGATCGACCGTGAGGGTCAGCA
GGCCATCTGAGCGCAAGAAGTAGAGACGCGGGAGAAACCCCGATCGGTGG
GTTCGTTGTGGTATTATCTTTTCCTGCGATCTTCGGTGGCTGAGCAGTTG
GCAAGTAAATGCTGCAGGAGTGACCGCAGCTCTATCAAGGGCACTGAAAC
ACTTGGGCTAAGAAAGGGGCAATGTATTTCTCGGGTAGAGTGCGCGTCTT
CATCTACAGAGTACGACACGACGAAAATAGAAAATGCAACCCGTCAAGAA
TGCTGTGACTTGGCGCGACAGTGCACCCAACGCACTTCCACACGACGCTT
GGTCAGGTGTGGGCGTAGTAACCAGTACCGGTCGGTGTTGTTCCGAACGT
GTGCCTGTTATTACAACGCGCAAGAGAATAAGTCATATATATATTACTAG
TAGGTAGCCACGGCTACGCCCAGGTGTGTGCGTTGGCAAAGTGGCGGGGA
CAACGGGTGCTCGAGCGAACGCGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9224:2198..5421-

>mRNA_S-dermatodea_contig9224.17289.1 ID=mRNA_S-dermatodea_contig9224.17289.1|Name=mRNA_S-dermatodea_contig9224.17289.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at S-dermatodea_contig9224:2198..5421- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGCGCAGTACACCGACGACGCGTGCGAAGAGCCCACCGGCGTGGA
ACACGTTGTCTCGGGGAGCGCCGTAAGCGCGCCTGGATTTTCTACCGAAG
CTTGCTTCCCTGGAGAAGTCGGAACGTTCGGACTCCCGTACCTGAGCGAG
TGTCTATCCGACGGCAAGGTTCTGATGAATTTATTTGGCATTGGAGATGA
CGCGTGCGAAGGGGAGCTGTACGCTGAAATCTTGACGACCTTCACGAGCG
ACTGGCCGCGCGAGCCCGACTGGCGCATTGTCGCGGACCGCGTGATCAGG
GAAACGACGAGCCACTCTTGCTTCCCGATCGCCGGCTTGTACTACCGATG
GCGGCGCAGTACACCGACGACGCGTGCGAAGAGCCCACCGGCGTGGAACA
CGTTGTCTCGGGGAGCGCCGTAAGCGCGCCTGGATTTTCTACCGAAGCTT
GCTTCCCTGGAGAAGTCGGAACGTTCGGACTCCCGTACCTGAGCGAGTGT
CTATCCGACGGCAAGGTTCTGATGAATTTATTTGGCATTGGAGATGACGC
GTGCGAAGGGGAGCTGTACGCTGAAATCTTGACGACCTTCACGAGCGACT
GGCCGCGCGAGCCCGACTGGCGCATTGTCGCGGACCGCGTGATCAGGGAA
ACGACGAGCCACTCTTGCTTCCCGATCGCCGGCTTGTACTACCGTGCCAT
GTCCTGTACAATGGATGTCGTTACTATCGGCGAAGCAACGGCACCGACAA
CCGCCCCCGCCACTCCCTCACCGTCCTCCTCTTCGACACCCGCTCTCGAG
CCTGCCACAACGGTCGCACCCTCGACCGGTGTACTCGAATCCCAGGTACC
TGTTACAGGAGCACCGGTCTCCCTCAGCCTCGAATCGACCCCTGCCCCTG
CATTCGCCCGCGAAGTCGCACCGGTGTCCGGTAGCCCAGCGACAACGCCC
GCTGCTACGACAACTGCCCCATCTGGTGCAGAAATCGATACACCATCGCC
CAGCGGAGGAAACTCACAGGAGACGGCCGCGACCACGACCCCTGCCACGG
GGGTAGAGGCCGGGGTGAATGCGGCGATCAGATCAGTTGGGAGCGGGGGC
TACATCGAGGTGGTCACCTTGTCGTTGTGTGGATTGGCGGCTTTCTTTTG
GGTGACCGCAGGGTTCTAGTGCCATGTCCTGTACAATGGATGTCGTTACT
ATCGGCGAAGCAACGGCACCGACAACCGCCCCCGCCACTCCCTCACCGTC
CTCCTCTTCGACACCCGCTCTCGAGCCTGCCACAACGGTCGCACCCTCGA
CCGGTGTACTCGAATCCCAGGTACCTGTTACAGGAGCACCGGTCTCCCTC
AGCCTCGAATCGACCCCTGCCCCTGCATTCGCCCGCGAAGTCGCACCGGT
GTCCGGTAGCCCAGCGACAACGCCCGCTGCTACGACAACTGCCCCATCTG
GTGCAGAAATCGATACACCATCGCCCAGCGGAGGAAACTCACAGGAGACG
GCCGCGACCACGACCCCTGCCACGGGGGTAGAGGCCGGGGTGAATGCGGC
GATCAGATCAGTTGGGAGCGGGGGCTACATCGAGGTGGTCACCTTGTCGT
TGTGTGGATTGGCGGCTTTCTTTTGGGTGACCGCAGGGTTCTAG
back to top