mRNA_S-dermatodea_contig92199.17283.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig92199.17283.1
Unique NamemRNA_S-dermatodea_contig92199.17283.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig92199.17283.1 vs. uniprot
Match: A0A8F0FDI8_9PHAE (SecY-independent transporter protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDI8_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 3.830e-47
Identity = 88/165 (53.33%), Postives = 117/165 (70.91%), Query Frame = 1
Query:    1 SLLIGIWISLIQLYLFLRPGLYNYEAKIGIKFIYITFYSYLLIYIKILPLIIHFSWNFFLAYTQNFKAIELIFEPQIEKYVNFISAIGLMSNLSYPIAILISLSLAYTKTKILTNYRGIVYIITFIITAILTPPDIITQIILALPIILFYEIQIVIWIIHKTYKN 495
            S++IGI IS+IQLYLFLRPGLY  EAK     I IT   Y+ IYI  LP+II  SW FF +YT+ F   +LIF+PQ++ Y+N+I  + ++ N SYP+ I ++L L+Y +  ILT +R IVY ITF    ILTPPDII+Q  + + II+FYEIQI+IW+I+K Y N
Sbjct:   71 SIVIGIMISVIQLYLFLRPGLYRNEAKKSFTLIIITLCFYIFIYILALPIIIQLSWEFFSSYTKTFNPTQLIFDPQLKNYLNYIYELSIIINFSYPLIITLNLILSYVQIIILTKHRKIVYFITFTTATILTPPDIISQTFVGVFIIMFYEIQIIIWMIYKKYNN 235          
BLAST of mRNA_S-dermatodea_contig92199.17283.1 vs. uniprot
Match: A0A089N2X8_PETFA (SecY-independent protein translocase component tatC n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089N2X8_PETFA)

HSP 1 Score: 141 bits (356), Expect = 1.480e-38
Identity = 73/168 (43.45%), Postives = 107/168 (63.69%), Query Frame = 1
Query:    1 SLLIGIWISLIQLYLFLRPGLYNYEAKIGIKFIYITFYSYLLIYIKILPLIIHFSWNFFLAYTQNFKAIELIFEPQIEKYVNFISAIGLMSNLSYPIAILISLSLAYTKTKILTNYRGIVYIITFIITAILTPPDIITQIILALPIILFYEIQIVIWIIHKTYKNLLL 504
            S+  G+  +++Q+YLFLRPGLY++E+KI +  +  T   Y  +Y  I PL+I F W  FL Y+QNF  I L FEP++  Y+  +  +  +  LS P  I ++L   YTK K+   YRGI YI  F + A +TPPDI++Q+ +  PIILFYE+QI+ W ++K Y+  LL
Sbjct:   71 SISFGLITAILQIYLFLRPGLYSFESKIVLNILICTLLFYTYLYTTIFPLLIKFLWELFLTYSQNFAPIHLTFEPRLNDYLEHVQHLNEVLCLSLPSIITLNLLQRYTKKKLWVKYRGIAYIAAFSLAAFITPPDILSQVFIGFPIILFYELQIIFWALYKQYQEQLL 238          
BLAST of mRNA_S-dermatodea_contig92199.17283.1 vs. uniprot
Match: A0A4D6E696_9PHAE (SecY-independent transporter protein n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E696_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 5.310e-38
Identity = 69/164 (42.07%), Postives = 107/164 (65.24%), Query Frame = 1
Query:   13 GIWISLIQLYLFLRPGLYNYEAKIGIKFIYITFYSYLLIYIKILPLIIHFSWNFFLAYTQNFKAIELIFEPQIEKYVNFISAIGLMSNLSYPIAILISLSLAYTKTKILTNYRGIVYIITFIITAILTPPDIITQIILALPIILFYEIQIVIWIIHKTYKNLLL 504
            G+ I+LIQLYLFLRPGLY +E+K     +   F+ Y+ +Y+ + P+II   W  F +Y+QNF AI+L FEP+++ Y+  +  +     + +P  I++++   YT   IL  YRGI YI  F I A +TPPD+++Q ++ LP+I+FYEIQ+  W +H+ YK  +L
Sbjct:   75 GLGIALIQLYLFLRPGLYAFESKTTFNVLIAAFFFYICLYLFLFPIIIKVLWKIFSSYSQNFIAIDLTFEPRLQDYLTHLQQLNKALTIGFPCLIILNILQIYTSRHILVKYRGIAYITAFSIAAFITPPDVLSQTLIGLPLIIFYEIQLKFWHLHEEYKKNIL 238          
BLAST of mRNA_S-dermatodea_contig92199.17283.1 vs. uniprot
Match: D0IPX3_9PHAE (SecY-independent transporter protein n=4 Tax=Laminariaceae TaxID=33636 RepID=D0IPX3_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 5.770e-38
Identity = 71/164 (43.29%), Postives = 103/164 (62.80%), Query Frame = 1
Query:   13 GIWISLIQLYLFLRPGLYNYEAKIGIKFIYITFYSYLLIYIKILPLIIHFSWNFFLAYTQNFKAIELIFEPQIEKYVNFISAIGLMSNLSYPIAILISLSLAYTKTKILTNYRGIVYIITFIITAILTPPDIITQIILALPIILFYEIQIVIWIIHKTYKNLLL 504
            G+ I+L QLYLFLRPGLY +EAK     +   F  Y  +Y+ + P+II   W  F  Y+QNF AI+L FEP+++ Y+N +  +     LS+P  I +++   YT  +    YRGI YI  F I A +TPPD+++Q ++ LP I+FYEIQ+ +W +H+ YK  LL
Sbjct:   75 GLGITLTQLYLFLRPGLYAFEAKTTFNLLITAFLFYACLYVFVFPIIIKVLWELFSTYSQNFTAIDLTFEPRLQDYLNHLQQLNKALTLSFPCLITLNIVQIYTDRQTWVKYRGIAYITAFSIAAFITPPDVLSQTLIGLPFIIFYEIQLKVWSLHEEYKKQLL 238          
BLAST of mRNA_S-dermatodea_contig92199.17283.1 vs. uniprot
Match: A0A8F0K057_9PHAE (SecY-independent transporter protein n=1 Tax=Saccharina subsessilis TaxID=2173147 RepID=A0A8F0K057_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.150e-37
Identity = 67/157 (42.68%), Postives = 102/157 (64.97%), Query Frame = 1
Query:   34 QLYLFLRPGLYNYEAKIGIKFIYITFYSYLLIYIKILPLIIHFSWNFFLAYTQNFKAIELIFEPQIEKYVNFISAIGLMSNLSYPIAILISLSLAYTKTKILTNYRGIVYIITFIITAILTPPDIITQIILALPIILFYEIQIVIWIIHKTYKNLLL 504
            QLYLFLRPGLY++EAK     +   F  Y  +Y+ + P+I+   W  F +Y QNF AI+L FEP+++ Y++ +  +     LS+P  I++++   YT  +    YRGI YI  F I A +TPPD+++Q+++ LP+I+FYEIQ+ IW +H+ YK  LL
Sbjct:   82 QLYLFLRPGLYDFEAKTTFNLLLTAFLFYTCLYVFVFPIIVKIFWELFSSYAQNFTAIDLTFEPRLQDYLSHLQQLNKALTLSFPCLIVLNIVQIYTNRQTWVKYRGIAYIAAFFIAAFITPPDVLSQVLIGLPLIMFYEIQLKIWSLHEEYKKQLL 238          
BLAST of mRNA_S-dermatodea_contig92199.17283.1 vs. uniprot
Match: A0A8F0K0V4_9PHAE (SecY-independent transporter protein n=2 Tax=Agaraceae TaxID=2012474 RepID=A0A8F0K0V4_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 3.310e-37
Identity = 71/164 (43.29%), Postives = 104/164 (63.41%), Query Frame = 1
Query:   13 GIWISLIQLYLFLRPGLYNYEAKIGIKFIYITFYSYLLIYIKILPLIIHFSWNFFLAYTQNFKAIELIFEPQIEKYVNFISAIGLMSNLSYPIAILISLSLAYTKTKILTNYRGIVYIITFIITAILTPPDIITQIILALPIILFYEIQIVIWIIHKTYKNLLL 504
            G+ I+L QLYLFLRPGLY +EA+I    +  T   Y  +YI I P+I+   W  F AY+QNF AI+L FEP++  Y++ +  +     LS+P  I + +   YT  +    YRGI YI+ F I A +TPPD+++Q ++ LP+I+FYEIQ+  W +++ YK  LL
Sbjct:   75 GLGITLTQLYLFLRPGLYTFEARITFNLLITTIIFYSCLYIFIFPIIVKVLWELFSAYSQNFTAIDLTFEPRLHDYLSHLRQLNKALTLSFPCLIALQIVQIYTSRQTWVKYRGIAYIVAFSIAAFITPPDVLSQTLIGLPLIIFYEIQLKFWALYEGYKKQLL 238          
BLAST of mRNA_S-dermatodea_contig92199.17283.1 vs. uniprot
Match: A0A8F0JZS6_9PHAE (SecY-independent transporter protein n=1 Tax=Cymathaere triplicata TaxID=309354 RepID=A0A8F0JZS6_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.670e-37
Identity = 71/164 (43.29%), Postives = 104/164 (63.41%), Query Frame = 1
Query:   13 GIWISLIQLYLFLRPGLYNYEAKIGIKFIYITFYSYLLIYIKILPLIIHFSWNFFLAYTQNFKAIELIFEPQIEKYVNFISAIGLMSNLSYPIAILISLSLAYTKTKILTNYRGIVYIITFIITAILTPPDIITQIILALPIILFYEIQIVIWIIHKTYKNLLL 504
            G+ I+L QLYLFLRPGLY +EAK     +      Y+ IY  + P+I+   W  F AY+QNF AI+L FEP+++ Y++ +  +     LS+P  IL+++   YT  +    YRGI YI  F I A +TPPD+++Q ++ LP+I+FYEIQI  W +++ YK  LL
Sbjct:   75 GLGIALTQLYLFLRPGLYAFEAKTTFHLLTTALIFYICIYTIVFPIIVKILWELFSAYSQNFTAIDLTFEPRLQDYLSHLQQLNTALTLSFPCLILLNIIQMYTNRETWIKYRGIAYITAFFIAAFITPPDVLSQTLIGLPLIIFYEIQIKFWSLYEEYKKQLL 238          
BLAST of mRNA_S-dermatodea_contig92199.17283.1 vs. uniprot
Match: E6ZEQ8_ECTSI (Sec-independent transporter protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ8_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.850e-36
Identity = 72/168 (42.86%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    1 SLLIGIWISLIQLYLFLRPGLYNYEAKIGIKFIYITFYSYLLIYIKILPLIIHFSWNFFLAYTQNFKAIELIFEPQIEKYVNFISAIGLMSNLSYPIAILISLSLAYTKTKILTNYRGIVYIITFIITAILTPPDIITQIILALPIILFYEIQIVIWIIHKTYKNLLL 504
            S+  GI++   Q Y+FLRPG+Y YE+   +K I   F  Y  IYI + P +I  SW  FL Y+QNF  I L FEP++  Y++ I  +  +   S+P  + ++L   YT  ++   +RGI YII F I A +TPPDII+QI++  P+I F+EIQI++W  +K YK  LL
Sbjct:   71 SISFGIFLIASQSYVFLRPGMYTYESSTFLKLIISAFCFYTYIYILVFPALIKVSWELFLTYSQNFTPINLTFEPRLNNYLDHIQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIIAFFIAAFITPPDIISQILVGAPLIFFFEIQIILWAFYKEYKKQLL 238          
BLAST of mRNA_S-dermatodea_contig92199.17283.1 vs. uniprot
Match: S4S3T7_LAMHY (SecY-independent transporter protein n=8 Tax=Laminariaceae TaxID=33636 RepID=S4S3T7_LAMHY)

HSP 1 Score: 135 bits (341), Expect = 2.620e-36
Identity = 70/164 (42.68%), Postives = 104/164 (63.41%), Query Frame = 1
Query:   13 GIWISLIQLYLFLRPGLYNYEAKIGIKFIYITFYSYLLIYIKILPLIIHFSWNFFLAYTQNFKAIELIFEPQIEKYVNFISAIGLMSNLSYPIAILISLSLAYTKTKILTNYRGIVYIITFIITAILTPPDIITQIILALPIILFYEIQIVIWIIHKTYKNLLL 504
            G+ I+L QLYLFLRPGLY +EA      +   F  Y  +YI + P+I+   W  F AY+QNF AI+L FEP+++ Y+  +  +     LS+P  I +++   YTK +    YRGI YI  F I A +TPPD+++Q ++ LP+I+FYEIQ+ +W +++ YK  LL
Sbjct:   75 GLGITLTQLYLFLRPGLYAFEANTIFNLLITAFLFYTCLYIFVFPIIVKVLWELFSAYSQNFTAIDLTFEPRLKDYLYHLQQLNKTLTLSFPCIITLNIIQIYTKKQTWVKYRGIAYIAAFSIAAFITPPDVLSQTLIGLPLIVFYEIQLKLWFLYEEYKKQLL 238          
BLAST of mRNA_S-dermatodea_contig92199.17283.1 vs. uniprot
Match: A0A8F0FDV4_9PHAE (SecY-independent transporter protein n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FDV4_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 3.690e-36
Identity = 68/164 (41.46%), Postives = 102/164 (62.20%), Query Frame = 1
Query:   13 GIWISLIQLYLFLRPGLYNYEAKIGIKFIYITFYSYLLIYIKILPLIIHFSWNFFLAYTQNFKAIELIFEPQIEKYVNFISAIGLMSNLSYPIAILISLSLAYTKTKILTNYRGIVYIITFIITAILTPPDIITQIILALPIILFYEIQIVIWIIHKTYKNLLL 504
             I I+L QLYLFLRPG Y +EAKI    +      Y+ +YI I P+I+   W  F  Y+QNF AI+L FEP++E Y++ +  +     LS+P  +++++   YT  +    YRGI YI  F I A +TPPDI++Q ++  P+I+FYE+Q+  W +++ YK  LL
Sbjct:   75 SICITLTQLYLFLRPGFYTFEAKITFNLLITALIFYICLYIVIFPIIVKILWELFSTYSQNFTAIDLTFEPKLENYLSHLQQLNKALTLSFPCLVILNILQIYTNKQTWVKYRGIAYITAFSIAAFITPPDILSQTLIGFPLIIFYELQLKFWSLYEEYKKQLL 238          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92199.17283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FDI8_9PHAE3.830e-4753.33SecY-independent transporter protein n=1 Tax=Proto... [more]
A0A089N2X8_PETFA1.480e-3843.45SecY-independent protein translocase component tat... [more]
A0A4D6E696_9PHAE5.310e-3842.07SecY-independent transporter protein n=2 Tax=Lamin... [more]
D0IPX3_9PHAE5.770e-3843.29SecY-independent transporter protein n=4 Tax=Lamin... [more]
A0A8F0K057_9PHAE1.150e-3742.68SecY-independent transporter protein n=1 Tax=Sacch... [more]
A0A8F0K0V4_9PHAE3.310e-3743.29SecY-independent transporter protein n=2 Tax=Agara... [more]
A0A8F0JZS6_9PHAE4.670e-3743.29SecY-independent transporter protein n=1 Tax=Cymat... [more]
E6ZEQ8_ECTSI1.850e-3642.86Sec-independent transporter protein n=2 Tax=Ectoca... [more]
S4S3T7_LAMHY2.620e-3642.68SecY-independent transporter protein n=8 Tax=Lamin... [more]
A0A8F0FDV4_9PHAE3.690e-3641.46SecY-independent transporter protein n=2 Tax=Ecklo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92199contigS-dermatodea_contig92199:3..555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size553
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92199.17283.1prot_S-dermatodea_contig92199.17283.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig92199 270..512 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925394.6350331-UTR-S-dermatodea_contig92199:2..2691622925394.6350331-UTR-S-dermatodea_contig92199:2..269Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92199 3..269 +
1694079904.2620702-UTR-S-dermatodea_contig92199:2..2691694079904.2620702-UTR-S-dermatodea_contig92199:2..269Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92199 3..269 +
1622925394.6553252-UTR-S-dermatodea_contig92199:512..5551622925394.6553252-UTR-S-dermatodea_contig92199:512..555Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92199 513..555 +
1694079904.2868657-UTR-S-dermatodea_contig92199:512..5551694079904.2868657-UTR-S-dermatodea_contig92199:512..555Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92199 513..555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925394.6455343-CDS-S-dermatodea_contig92199:269..5121622925394.6455343-CDS-S-dermatodea_contig92199:269..512Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92199 270..512 +
1694079904.2747416-CDS-S-dermatodea_contig92199:269..5121694079904.2747416-CDS-S-dermatodea_contig92199:269..512Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92199 270..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig92199.17283.1

>prot_S-dermatodea_contig92199.17283.1 ID=prot_S-dermatodea_contig92199.17283.1|Name=mRNA_S-dermatodea_contig92199.17283.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=81bp
MSNLSYPIAILISLSLAYTKTKILTNYRGIVYIITFIITAILTPPDIITQ
IILALPIILFYEIQIVIWIIHKTYKNLLLN*
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mRNA from alignment at S-dermatodea_contig92199:3..555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig92199.17283.1 ID=mRNA_S-dermatodea_contig92199.17283.1|Name=mRNA_S-dermatodea_contig92199.17283.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=553bp|location=Sequence derived from alignment at S-dermatodea_contig92199:3..555+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTTATTAATCGGGATTTGGATCAGTTTGATACAGCTTTACCTATTTTT ACGTCCTGGTTTATACAATTATGAAGCTAAAATAGGAATAAAATTTATAT ACATTACATTTTATTCCTATTTACTTATTTATATTAAGATACTTCCATTA ATAATACATTTCTCCTGGAATTTTTTTTTAGCTTATACCCAAAATTTTAA GGCAATAGAATTAATATTTGAACCTCAAATTGAAAAGTATGTAAATTTTA TATCTGCTATTGGATTAATGTCCAATCTTAGTTATCCTATTGCAATTCTA ATTAGCCTAAGTTTAGCCTATACAAAAACAAAAATATTAACAAACTATCG TGGAATAGTATATATAATTACTTTTATTATCACAGCAATTTTAACTCCAC CTGACATAATAACTCAGATAATTTTAGCATTACCTATAATATTATTTTAC GAAATTCAAATAGTTATTTGGATCATACATAAAACCTACAAAAATTTATT ACTTAATTAGGAAGCCAATTAAAACTTACAAGAACACCTGCAATAAAAAA AAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig92199:3..555+

>mRNA_S-dermatodea_contig92199.17283.1 ID=mRNA_S-dermatodea_contig92199.17283.1|Name=mRNA_S-dermatodea_contig92199.17283.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at S-dermatodea_contig92199:3..555+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCAATCTTAGTTATCCTATTGCAATTCTAATTAGCCTAAGTTTAGC
CTATACAAAAACAAAAATATTAACAAACTATCGTGGAATAGTATATATAA
TTACTTTTATTATCACAGCAATTTTAACTCCACCTGACATAATAACTCAG
ATAATTTTAGCATTACCTATAATATTATTTTACGAAATTCAAATAGTTAT
TTGGATCATACATAAAACCTACAAAAATTTATTACTTAATTAGATGTCCA
ATCTTAGTTATCCTATTGCAATTCTAATTAGCCTAAGTTTAGCCTATACA
AAAACAAAAATATTAACAAACTATCGTGGAATAGTATATATAATTACTTT
TATTATCACAGCAATTTTAACTCCACCTGACATAATAACTCAGATAATTT
TAGCATTACCTATAATATTATTTTACGAAATTCAAATAGTTATTTGGATC
ATACATAAAACCTACAAAAATTTATTACTTAATTAG
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