mRNA_S-dermatodea_contig91874.17250.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91874.17250.1
Unique NamemRNA_S-dermatodea_contig91874.17250.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig91874.17250.1 vs. uniprot
Match: A0A2I4Q318_9PHAE (Photosystem II reaction center protein K n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q318_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.710e-18
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 MVVIFLNKLPELYSIFSPLVDILPIIPVLFLLLAFVWQASVGFR 132
            MVV+FLNKLPELY IFSPLVDILP+IPVLFLLLAF+WQASVGFR
Sbjct:    1 MVVVFLNKLPELYVIFSPLVDILPVIPVLFLLLAFLWQASVGFR 44
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BLAST of mRNA_S-dermatodea_contig91874.17250.1 vs. uniprot
Match: A0A8F0F735_9PHAE (Photosystem II reaction center protein K n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F735_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.410e-17
Identity = 37/44 (84.09%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 MVVIFLNKLPELYSIFSPLVDILPIIPVLFLLLAFVWQASVGFR 132
            MV++FLNKLPELY IFSP+VDILP++PVLFLLLAF+WQASVGFR
Sbjct:    1 MVILFLNKLPELYLIFSPVVDILPVVPVLFLLLAFLWQASVGFR 44
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BLAST of mRNA_S-dermatodea_contig91874.17250.1 vs. uniprot
Match: A0A1L2F1W9_9PHAE (Photosystem II reaction center protein K n=3 Tax=Fucales TaxID=3009 RepID=A0A1L2F1W9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.560e-15
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:   10 IFLNKLPELYSIFSPLVDILPIIPVLFLLLAFVWQASVGFR 132
            + L KLPELY+I+SP+VDILPIIPVLFLLLAF+WQASVGFR
Sbjct:    4 VLLTKLPELYAIYSPIVDILPIIPVLFLLLAFLWQASVGFR 44
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BLAST of mRNA_S-dermatodea_contig91874.17250.1 vs. uniprot
Match: A0A3R5UAE1_9STRA (Photosystem II reaction center protein K n=1 Tax=Pseudellipsoidion edaphicum TaxID=1431838 RepID=A0A3R5UAE1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.120e-14
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   13 FLNKLPELYSIFSPLVDILPIIPVLFLLLAFVWQASVGFR 132
            FL KLPE++++FSPLVDILP+IPVLFLLLAFVWQA+VGFR
Sbjct:    5 FLAKLPEVFAVFSPLVDILPVIPVLFLLLAFVWQAAVGFR 44
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BLAST of mRNA_S-dermatodea_contig91874.17250.1 vs. uniprot
Match: A0A4D6WWV2_9FLOR (Photosystem II reaction center protein K n=2 Tax=Ceramiaceae TaxID=31377 RepID=A0A4D6WWV2_9FLOR)

HSP 1 Score: 68.9 bits (167), Expect = 1.150e-14
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   10 IFLNKLPELYSIFSPLVDILPIIPVLFLLLAFVWQASVGFR 132
            IFL KLP+ YSIF PLVDILPIIPV FLLLAFVWQA+VGFR
Sbjct:    5 IFLTKLPDAYSIFRPLVDILPIIPVFFLLLAFVWQAAVGFR 45
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BLAST of mRNA_S-dermatodea_contig91874.17250.1 vs. uniprot
Match: A0A1Y9TMC7_9RHOD (Photosystem II reaction center protein K n=1 Tax=Bulboplastis apyrenoidosa TaxID=1070855 RepID=A0A1Y9TMC7_9RHOD)

HSP 1 Score: 68.6 bits (166), Expect = 1.630e-14
Identity = 31/41 (75.61%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   10 IFLNKLPELYSIFSPLVDILPIIPVLFLLLAFVWQASVGFR 132
            + LNKLPE+Y+IF PL+DILP++PV FLLLAFVWQA+VGFR
Sbjct:    5 LLLNKLPEIYTIFKPLIDILPVVPVFFLLLAFVWQAAVGFR 45
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BLAST of mRNA_S-dermatodea_contig91874.17250.1 vs. uniprot
Match: A0A7S6U9V7_9STRA (Photosystem II reaction center protein K n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.270e-14
Identity = 32/44 (72.73%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 MVVIFLNKLPELYSIFSPLVDILPIIPVLFLLLAFVWQASVGFR 132
            M +I ++KLP+ Y+IFSP++DILPI+PVLFLLLAFVWQA+VGFR
Sbjct:    1 MEIILISKLPDAYTIFSPIIDILPIVPVLFLLLAFVWQAAVGFR 44
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BLAST of mRNA_S-dermatodea_contig91874.17250.1 vs. uniprot
Match: A0A0C5DZG8_GRALE (Photosystem II reaction center protein K n=8 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A0C5DZG8_GRALE)

HSP 1 Score: 68.2 bits (165), Expect = 2.320e-14
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 MVVIFLNKLPELYSIFSPLVDILPIIPVLFLLLAFVWQASVGFR 132
            M +I L KLPE YSIF PLVDILP+IPV FLLLAFVWQA++GFR
Sbjct:    2 MTMILLTKLPEAYSIFRPLVDILPVIPVFFLLLAFVWQAAIGFR 45
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BLAST of mRNA_S-dermatodea_contig91874.17250.1 vs. uniprot
Match: A0A3G3MHZ3_9FLOR (Photosystem II reaction center protein K n=1 Tax=Rhodogorgon sp. TaxID=2485824 RepID=A0A3G3MHZ3_9FLOR)

HSP 1 Score: 68.2 bits (165), Expect = 2.320e-14
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:   13 FLNKLPELYSIFSPLVDILPIIPVLFLLLAFVWQASVGFR 132
            FL KLPE+Y+IF PLVDILP+IPV FLLLAFVWQA+VGFR
Sbjct:    6 FLAKLPEIYAIFKPLVDILPVIPVFFLLLAFVWQAAVGFR 45
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BLAST of mRNA_S-dermatodea_contig91874.17250.1 vs. uniprot
Match: A0A1X9PUI9_9RHOD (Photosystem II reaction center protein K n=1 Tax=Flintiella sanguinaria TaxID=101926 RepID=A0A1X9PUI9_9RHOD)

HSP 1 Score: 68.2 bits (165), Expect = 2.320e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    7 VIFLNKLPELYSIFSPLVDILPIIPVLFLLLAFVWQASVGFR 132
            ++  +KLPE Y+IF PLVDILP+IPVLFLLLAFVWQASVGFR
Sbjct:    4 ILLFSKLPEAYAIFKPLVDILPVIPVLFLLLAFVWQASVGFR 45
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91874.17250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I4Q318_9PHAE1.710e-1890.91Photosystem II reaction center protein K n=1 Tax=D... [more]
A0A8F0F735_9PHAE1.410e-1784.09Photosystem II reaction center protein K n=1 Tax=P... [more]
A0A1L2F1W9_9PHAE5.560e-1582.93Photosystem II reaction center protein K n=3 Tax=F... [more]
A0A3R5UAE1_9STRA1.120e-1482.50Photosystem II reaction center protein K n=1 Tax=P... [more]
A0A4D6WWV2_9FLOR1.150e-1485.37Photosystem II reaction center protein K n=2 Tax=C... [more]
A0A1Y9TMC7_9RHOD1.630e-1475.61Photosystem II reaction center protein K n=1 Tax=B... [more]
A0A7S6U9V7_9STRA2.270e-1472.73Photosystem II reaction center protein K n=1 Tax=S... [more]
A0A0C5DZG8_GRALE2.320e-1477.27Photosystem II reaction center protein K n=8 Tax=R... [more]
A0A3G3MHZ3_9FLOR2.320e-1482.50Photosystem II reaction center protein K n=1 Tax=R... [more]
A0A1X9PUI9_9RHOD2.320e-1478.57Photosystem II reaction center protein K n=1 Tax=F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91874contigS-dermatodea_contig91874:189..323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.0
Seed ortholog evalue2.5e-09
Seed eggNOG ortholog1487953.JMKF01000005_gene619
Preferred namepsbK
KEGG koko:K02712
KEGG Pathwayko00195,ko01100,map00195,map01100
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0009521,GO:0009523,GO:0009579,GO:0016020,GO:0030075,GO:0030096,GO:0032991,GO:0034357,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044425,GO:0044436,GO:0044444,GO:0044459,GO:0044464,GO:0071944,GO:0098796,GO:0098797
EggNOG free text desc.One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation
EggNOG OGs1G9DE@1117,2E3TA@1,32YQR@2
COG Functional cat.S
BiGG ReactioniJN678.psbK
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorysignal anchor
Exons1
Model size135
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925391.990724-CDS-S-dermatodea_contig91874:188..3231622925391.990724-CDS-S-dermatodea_contig91874:188..323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91874 189..323 +
1694079902.4288704-CDS-S-dermatodea_contig91874:188..3231694079902.4288704-CDS-S-dermatodea_contig91874:188..323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91874 189..323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91874.17250.1prot_S-dermatodea_contig91874.17250.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91874 189..323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91874.17250.1

>prot_S-dermatodea_contig91874.17250.1 ID=prot_S-dermatodea_contig91874.17250.1|Name=mRNA_S-dermatodea_contig91874.17250.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=45bp
MVVIFLNKLPELYSIFSPLVDILPIIPVLFLLLAFVWQASVGFR*
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mRNA from alignment at S-dermatodea_contig91874:189..323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91874.17250.1 ID=mRNA_S-dermatodea_contig91874.17250.1|Name=mRNA_S-dermatodea_contig91874.17250.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at S-dermatodea_contig91874:189..323+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTAGTAATATTCCTGAATAAATTACCAGAATTATACTCAATATTTAG
CCCACTTGTAGATATATTACCAATTATACCGGTTTTATTTTTATTGCTTG
CGTTTGTTTGGCAAGCTTCAGTTGGATTTCGATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig91874:189..323+

>mRNA_S-dermatodea_contig91874.17250.1 ID=mRNA_S-dermatodea_contig91874.17250.1|Name=mRNA_S-dermatodea_contig91874.17250.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at S-dermatodea_contig91874:189..323+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTAGTAATATTCCTGAATAAATTACCAGAATTATACTCAATATTTAG
CCCACTTGTAGATATATTACCAATTATACCGGTTTTATTTTTATTGCTTG
CGTTTGTTTGGCAAGCTTCAGTTGGATTTCGATAAATGGTAGTAATATTC
CTGAATAAATTACCAGAATTATACTCAATATTTAGCCCACTTGTAGATAT
ATTACCAATTATACCGGTTTTATTTTTATTGCTTGCGTTTGTTTGGCAAG
CTTCAGTTGGATTTCGATAA
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