mRNA_S-dermatodea_contig91473.17219.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91473.17219.1
Unique NamemRNA_S-dermatodea_contig91473.17219.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig91473.17219.1 vs. uniprot
Match: A0A6H5JYF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.650e-18
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    4 RVESKGGKRYMLLIKDDYSRYTFLYFLRRKKEAHELFAKFLA----DVSPIEVIVTRSDDGREFRGEGFSSLCNLRKIRHEFTTADRPEFNGV 270
            RV+S GGK Y L++KDDY+R+  +YFL+ K +A E F ++LA    D +P +VIV RSD+G EF       +C    I+ EFT A  PE+NGV
Sbjct:  180 RVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVIVVRSDNGGEFFEGEIGKVCRKYCIKEEFTAAHSPEYNGV 272
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BLAST of mRNA_S-dermatodea_contig91473.17219.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.190e-17
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    7 VESKGGKRYMLLIKDDYSRYTFLYFLRRKKEAHELFAKFLADVS----PIEVIVTRSDDGREFRGEGFSSLCNLRKIRHEFTTADRPEFNGV 270
            + S GGK Y +++KDD++R+T++YFLR K +A   F  FLA V     P  V + RSD+G +F G  F+S+CN   I+ EFT A  P++NGV
Sbjct:  105 IASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGV 196
[Close]
BLAST of mRNA_S-dermatodea_contig91473.17219.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.830e-17
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    7 VESKGGKRYMLLIKDDYSRYTFLYFLRRKKEAHELFAKFLADVS----PIEVIVTRSDDGREFRGEGFSSLCNLRKIRHEFTTADRPEFNGV 270
            V S GGK Y +++KDD++R  ++YFLR K +A   F  FLA+V     P  + + RSD+G EF G  F+S+CN   I+ EFT A  PEFNGV
Sbjct:  488 VASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGV 579
[Close]
BLAST of mRNA_S-dermatodea_contig91473.17219.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.830e-17
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    7 VESKGGKRYMLLIKDDYSRYTFLYFLRRKKEAHELFAKFLADVS----PIEVIVTRSDDGREFRGEGFSSLCNLRKIRHEFTTADRPEFNGV 270
            V S GGK Y +++KDD++R  ++YFLR K +A   F  FLA+V     P  + + RSD+G EF G  F+S+CN   I+ EFT A  PEFNGV
Sbjct:  464 VASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGV 555
[Close]
BLAST of mRNA_S-dermatodea_contig91473.17219.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.900e-17
Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    4 RVESKGGKRYMLLIKDDYSRYTFLYFLRRKKEAHELFAKFLADV----SPIEVIVTRSDDGREFRGEGFSSLCNLRKIRHEFTTADRPEFNGV 270
            RV+S GGK Y L++KDDY+R+  +YFL+ K +A E F ++LA+     +P +V+V RSD+G EF    F  +C    I+ EFT A  PE++GV
Sbjct:   46 RVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGV 138
[Close]
BLAST of mRNA_S-dermatodea_contig91473.17219.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.400e-17
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    4 RVESKGGKRYMLLIKDDYSRYTFLYFLRRKKEAHELFAKFLADV----SPIEVIVTRSDDGREFRGEGFSSLCNLRKIRHEFTTADRPEFNGV 270
            RV+S GGK Y L++KDDY+R+  +YFL+ K +A E F ++LA+     +P +V+V RSD+G EF    F  +C    I+ EFT A  PE+NGV
Sbjct: 1013 RVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGV 1105
[Close]
BLAST of mRNA_S-dermatodea_contig91473.17219.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.400e-17
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    4 RVESKGGKRYMLLIKDDYSRYTFLYFLRRKKEAHELFAKFL----ADVSPIEVIVTRSDDGREFRGEGFSSLCNLRKIRHEFTTADRPEFNGV 270
            R +S GGK Y L++KDDY+R+  +YFL+ K +A E F ++L    AD +P +V+V RSD+G EF    F  +C    I+ EFT A  PE+NGV
Sbjct:  378 RAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGV 470
[Close]
BLAST of mRNA_S-dermatodea_contig91473.17219.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.430e-17
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    4 RVESKGGKRYMLLIKDDYSRYTFLYFLRRKKEAHELFAKFLADV----SPIEVIVTRSDDGREFRGEGFSSLCNLRKIRHEFTTADRPEFNGV 270
            RV+S GGK Y L++KDDY+R+  +YFL+ K +A E F ++LA+     +P +V+V RSD+G EF    F  +C    I+ EFT A  PE+NGV
Sbjct:  745 RVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGV 837
[Close]
BLAST of mRNA_S-dermatodea_contig91473.17219.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.430e-17
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    4 RVESKGGKRYMLLIKDDYSRYTFLYFLRRKKEAHELFAKFLADV----SPIEVIVTRSDDGREFRGEGFSSLCNLRKIRHEFTTADRPEFNGV 270
            RV+S GGK Y L++KDDY+R+  +YFL+ K +A E F ++LA+     +P +V+V RSD+G EF    F  +C    I+ EFT A  PE+NGV
Sbjct:  580 RVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGV 672
[Close]
BLAST of mRNA_S-dermatodea_contig91473.17219.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.430e-17
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    4 RVESKGGKRYMLLIKDDYSRYTFLYFLRRKKEAHELFAKFLADV----SPIEVIVTRSDDGREFRGEGFSSLCNLRKIRHEFTTADRPEFNGV 270
            RV+S GGK Y L++KDDY+R+  +YFL+ K +A E F ++LA+     +P +V+V RSD+G EF    F  +C    I+ EFT A  PE+NGV
Sbjct:  593 RVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGV 685
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91473.17219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYF9_9PHAE3.650e-1847.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVR5_9PHAE1.190e-1745.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K622_9PHAE1.830e-1747.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE1.830e-1747.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7U9_9PHAE1.900e-1745.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K583_9PHAE3.400e-1746.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE3.400e-1746.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JTI6_9PHAE3.430e-1746.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE3.430e-1746.24Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE3.430e-1746.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91473contigS-dermatodea_contig91473:302..571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score74.3
Seed ortholog evalue3.2e-11
Seed eggNOG ortholog4098.XP_009587381.1
EggNOG free text desc.zinc finger
EggNOG OGs37SNQ@33090,3GHRQ@35493,44SCF@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925389.7871342-CDS-S-dermatodea_contig91473:301..5711622925389.7871342-CDS-S-dermatodea_contig91473:301..571Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91473 302..571 +
1694079900.8382306-CDS-S-dermatodea_contig91473:301..5711694079900.8382306-CDS-S-dermatodea_contig91473:301..571Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91473 302..571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91473.17219.1prot_S-dermatodea_contig91473.17219.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91473 302..571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91473.17219.1

>prot_S-dermatodea_contig91473.17219.1 ID=prot_S-dermatodea_contig91473.17219.1|Name=mRNA_S-dermatodea_contig91473.17219.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
XRVESKGGKRYMLLIKDDYSRYTFLYFLRRKKEAHELFAKFLADVSPIEV
IVTRSDDGREFRGEGFSSLCNLRKIRHEFTTADRPEFNGV
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mRNA from alignment at S-dermatodea_contig91473:302..571+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91473.17219.1 ID=mRNA_S-dermatodea_contig91473.17219.1|Name=mRNA_S-dermatodea_contig91473.17219.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=270bp|location=Sequence derived from alignment at S-dermatodea_contig91473:302..571+ (Saccorhiza dermatodea SderLu1190fm monoicous)
NNGAGGGTAGAGTCGAAAGGGGGAAAGCGCTACATGTTGCTGATCAAAGA
CGACTACTCTCGATACACATTCCTGTACTTCCTCCGTCGAAAGAAAGAAG
CGCACGAGTTATTTGCGAAATTCCTCGCAGACGTTAGCCCTATTGAGGTC
ATCGTCACAAGGTCGGACGATGGAAGAGAGTTCCGCGGGGAGGGGTTTAG
TTCGCTCTGTAACCTGCGGAAAATCAGGCACGAGTTCACGACAGCAGACC
GCCCAGAGTTTAATGGGGTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig91473:302..571+

>mRNA_S-dermatodea_contig91473.17219.1 ID=mRNA_S-dermatodea_contig91473.17219.1|Name=mRNA_S-dermatodea_contig91473.17219.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig91473:302..571+ (Saccorhiza dermatodea SderLu1190fm monoicous)
NNGAGGGTAGAGTCGAAAGGGGGAAAGCGCTACATGTTGCTGATCAAAGA
CGACTACTCTCGATACACATTCCTGTACTTCCTCCGTCGAAAGAAAGAAG
CGCACGAGTTATTTGCGAAATTCCTCGCAGACGTTAGCCCTATTGAGGTC
ATCGTCACAAGGTCGGACGATGGAAGAGAGTTCCGCGGGGAGGGGTTTAG
TTCGCTCTGTAACCTGCGGAAAATCAGGCACGAGTTCACGACAGCAGACC
GCCCAGAGTTTAATGGGGTTNNGAGGGTAGAGTCGAAAGGGGGAAAGCGC
TACATGTTGCTGATCAAAGACGACTACTCTCGATACACATTCCTGTACTT
CCTCCGTCGAAAGAAAGAAGCGCACGAGTTATTTGCGAAATTCCTCGCAG
ACGTTAGCCCTATTGAGGTCATCGTCACAAGGTCGGACGATGGAAGAGAG
TTCCGCGGGGAGGGGTTTAGTTCGCTCTGTAACCTGCGGAAAATCAGGCA
CGAGTTCACGACAGCAGACCGCCCAGAGTTTAATGGGGTT
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