mRNA_S-dermatodea_contig914.17214.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig914.17214.1
Unique NamemRNA_S-dermatodea_contig914.17214.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig914.17214.1 vs. uniprot
Match: A0A6H5L2C7_9PHAE (Bms1-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2C7_9PHAE)

HSP 1 Score: 385 bits (990), Expect = 5.900e-123
Identity = 191/200 (95.50%), Postives = 196/200 (98.00%), Query Frame = 1 
Query:    1 KVERHNPRAFSVTNLGKTRKAQQRNLDRAQRKEVVPQVDRAEEVPPPVMVVVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITFEECPDDLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLNMLQVHGFPKVMCVLTHLDRFDNVKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVRRV 600
            KVERHNPRAFSV+ +GKTRK QQRNLDRAQRKEVVPQVDRAEEVPPPVMVVVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITF+ECPDDLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLN+LQVHGFPKVMCVLTHLDRFDNVK LRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVR +
Sbjct:   33 KVERHNPRAFSVSKIGKTRKTQQRNLDRAQRKEVVPQVDRAEEVPPPVMVVVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITFQECPDDLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLNILQVHGFPKVMCVLTHLDRFDNVKALRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVRNI 232
[Close]
BLAST of mRNA_S-dermatodea_contig914.17214.1 vs. uniprot
Match: W7TXR8_9STRA (Ribosome biogenesis protein bms1-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXR8_9STRA)

HSP 1 Score: 270 bits (691), Expect = 4.770e-89
Identity = 136/200 (68.00%), Postives = 160/200 (80.00%), Query Frame = 1 
Query:    4 VERHNPRAFSVTNLGKTRKAQQRNLDRAQRKEVVPQVDRAEEVPPPVMVVVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITFEECP-DDLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLNMLQVHGFPKVMCVLTHLDRFDNVKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVRRV 600
             ERHNPRAFSV N+ +T++  QRNLDRAQ+KE VP VDR E +PPP +VVVMGP+G GK+TLIRSL+K YT  NL +  GPITVV+GK +R+TF ECP DDLC M+DLAK ADLVLL+VDGSFGFEMETFEFLNMLQ HGFPKVM V++HLD   N K L  TKK+LK RFWTE+Y GAK+F + G IN KY K E+R +
Sbjct:   38 TERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNI 237
[Close]
BLAST of mRNA_S-dermatodea_contig914.17214.1 vs. uniprot
Match: I2CPB3_NANGC (Ribosome biogenesis protein BMS1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPB3_NANGC)

HSP 1 Score: 270 bits (691), Expect = 1.070e-86
Identity = 136/200 (68.00%), Postives = 160/200 (80.00%), Query Frame = 1 
Query:    4 VERHNPRAFSVTNLGKTRKAQQRNLDRAQRKEVVPQVDRAEEVPPPVMVVVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITFEECP-DDLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLNMLQVHGFPKVMCVLTHLDRFDNVKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVRRV 600
             ERHNPRAFSV N+ +T++  QRNLDRAQ+KE VP VDR E +PPP +VVVMGP+G GK+TLIRSL+K YT  NL +  GPITVV+GK +R+TF ECP DDLC M+DLAK ADLVLL+VDGSFGFEMETFEFLNMLQ HGFPKVM V++HLD   N K L  TKK+LK RFWTE+Y GAK+F + G IN KY K E+R +
Sbjct:   38 TERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNI 237
[Close]
BLAST of mRNA_S-dermatodea_contig914.17214.1 vs. uniprot
Match: A0A1V9ZFU4_9STRA (Ribosome biogenesis protein BMS1 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFU4_9STRA)

HSP 1 Score: 270 bits (691), Expect = 3.650e-86
Identity = 130/197 (65.99%), Postives = 161/197 (81.73%), Query Frame = 1 
Query:   10 RHNPRAFSVTNLGKTRKAQQRNLDRAQRKEVVPQVDRAEEVPPPVMVVVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITFEECPDDLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLNMLQVHGFPKVMCVLTHLDRFDNVKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVRRV 600
            ++NP+AF V+ +GK ++  QRNLD+A +KE VP VDR E+ PPP+ VVVMGP GSGK+TLIRSL+K YT HN+ E  GPITV+SGK+RRITF ECP+DL  M+DLAK+ADLVLL+VD SFGFEMETFEFLN+LQV GFPKVM +LTHLD+F N K+LR TKK+LK RFWTE+Y GAK+F   G ++ KYPK E+  +
Sbjct:   37 KNNPKAFGVSKIGKAKRMTQRNLDKAHQKEYVPLVDRTEDTPPPITVVVMGPPGSGKSTLIRSLVKRYTRHNIGEIKGPITVISGKDRRITFFECPNDLNAMIDLAKIADLVLLMVDASFGFEMETFEFLNILQVSGFPKVMGILTHLDKFKNNKSLRQTKKRLKNRFWTEIYQGAKLFYFSGIVSNKYPKGEINNM 233
[Close]
BLAST of mRNA_S-dermatodea_contig914.17214.1 vs. uniprot
Match: A0A2P4XFU5_9STRA (Bms1-type G domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XFU5_9STRA)

HSP 1 Score: 268 bits (686), Expect = 6.850e-86
Identity = 134/198 (67.68%), Postives = 158/198 (79.80%), Query Frame = 1 
Query:    7 ERHNPRAFSVTNLGKTRKAQQRNLDRAQRKEVVPQVDRAEEVPPPVMVVVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITFEECPDDLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLNMLQVHGFPKVMCVLTHLDRFDNVKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVRRV 600
            +R NP+AF V   G+ RK  QRNLDRA RKE VPQ++RAEE+PPP+ VVVMGP GSGK+T+IRSL+K YT HNL E  GP+TVVSGK+RRITF ECP+DL  M+DLAK+ADLVLL+VD SFGFEMETFEFLN+LQV GFPKVM +LTHLD F   K+LR TKK+LK RFWTE+Y GAK+F   G    KYPK E+  +
Sbjct:   40 QRKNPKAFGVAKAGRARKTIQRNLDRAHRKEYVPQLNRAEELPPPISVVVMGPPGSGKSTVIRSLVKRYTRHNLVEVKGPVTVVSGKDRRITFFECPNDLNAMIDLAKIADLVLLLVDASFGFEMETFEFLNILQVVGFPKVMGILTHLDSFKKNKSLRKTKKRLKARFWTEIYQGAKLFYFSGISANKYPKGEIHNL 237
[Close]
BLAST of mRNA_S-dermatodea_contig914.17214.1 vs. uniprot
Match: A0A8J9SMQ5_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SMQ5_PHATR)

HSP 1 Score: 261 bits (666), Expect = 2.720e-85
Identity = 134/203 (66.01%), Postives = 158/203 (77.83%), Query Frame = 1 
Query:    1 KVERHNPRAFSVTNLGKTRKAQQRNLDRAQRKEVVPQVDR-AEEV--PPPVMVVVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITFEECPDDLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLNMLQVHGFPKVMCVLTHLDRFDNVKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVRRV 600
            +VERHNPRAFSV N+G+T++  QRN DRAQ+KE VP  DR A EV   PP +VVVMGP G GK+TLIRSL+KLYT + L   TGPITVV+GKN+RITF ECP+D   M+D AK+ADLVLL VD  FGFEMETFEFLN+LQ HGFPKVM + THLD+F   K LR TKK LK RFWTE+Y+GAK+F   G INGKY K E +++
Sbjct:   35 RVERHNPRAFSVANIGRTKRTIQRNADRAQKKEYVPLNDRRAAEVHETPPSLVVVMGPSGVGKSTLIRSLVKLYTNYTLTTVTGPITVVAGKNKRITFMECPNDTAAMLDCAKIADLVLLCVDAKFGFEMETFEFLNILQTHGFPKVMGIFTHLDQFRTAKNLRKTKKLLKHRFWTEIYDGAKMFYFSGVINGKYLKNECKQL 237
[Close]
BLAST of mRNA_S-dermatodea_contig914.17214.1 vs. uniprot
Match: A0A7S4QGR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QGR5_9STRA)

HSP 1 Score: 263 bits (671), Expect = 1.400e-84
Identity = 130/201 (64.68%), Postives = 160/201 (79.60%), Query Frame = 1 
Query:    1 KVERHNPRAFSVTNLGKTRKAQQRNLDRAQRKEVVPQVDRAEEVP-PPVMVVVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITFEECPDDLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLNMLQVHGFPKVMCVLTHLDRFDNVKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVRRV 600
            +VE+HNPRAFSV+N+ +T++  QRNLDR QRKE VP  DR  EV  PP ++VVMGP   GK+TLIRS++K+Y  HNL   TGP+TVV+GKN+R+TF ECP+D   M+DLAKVADLVLL+VD  +GFEMETFEFLNMLQ HGFPKVM V THLD+F  +K LR TKK LK RFWTE+Y+GAK+F   G +NGKY K EV+++
Sbjct:   36 RVEKHNPRAFSVSNIVRTQRTIQRNLDRGQRKEYVPLNDRRSEVDAPPSVIVVMGPPKVGKSTLIRSMVKMYCNHNLSSVTGPVTVVTGKNKRVTFFECPNDTAAMLDLAKVADLVLLMVDAKYGFEMETFEFLNMLQTHGFPKVMGVFTHLDQFKTMKNLRKTKKLLKHRFWTEIYDGAKMFYFSGCVNGKYLKNEVKQL 236
[Close]
BLAST of mRNA_S-dermatodea_contig914.17214.1 vs. uniprot
Match: A0A7S3YEJ2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEJ2_HETAK)

HSP 1 Score: 261 bits (668), Expect = 3.630e-84
Identity = 130/193 (67.36%), Postives = 154/193 (79.79%), Query Frame = 1 
Query:   22 RAFSVTNLGKTRKAQQRNLDRAQRKEVVPQVDRAEEVPPPVMVVVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITFEECPDDLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLNMLQVHGFPKVMCVLTHLDRFDNVKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVRRV 600
            RAFSV+ +GKT+K  QRNLD+AQ+KE  P VDR E++PPPV VVVMGP G GK++LIRSL+KLYT  NL E TGPIT+V  K RR+T  EC +DL  MVDLAK+ADLVLL+VD S+GFEMETFEFLN+LQVHGFPKVM VLTHLD+  N K L  TKK LK RFWTE+Y GAK+F + G +NGKY K E+R +
Sbjct:    1 RAFSVSKIGKTKKNVQRNLDKAQQKEYAPLVDRTEDIPPPVCVVVMGPPGCGKSSLIRSLVKLYTRQNLTEITGPITIVCNKKRRLTLFECTNDLSAMVDLAKIADLVLLMVDASYGFEMETFEFLNILQVHGFPKVMGVLTHLDKMKNNKALSKTKKALKHRFWTEIYQGAKMFYLSGMVNGKYLKNEIRNL 193
[Close]
BLAST of mRNA_S-dermatodea_contig914.17214.1 vs. uniprot
Match: A0A067C0E8_SAPPC (Bms1-type G domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C0E8_SAPPC)

HSP 1 Score: 273 bits (699), Expect = 2.750e-83
Identity = 132/200 (66.00%), Postives = 164/200 (82.00%), Query Frame = 1 
Query:    1 KVERHNPRAFSVTNLGKTRKAQQRNLDRAQRKEVVPQVDRAEEVPPPVMVVVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITFEECPDDLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLNMLQVHGFPKVMCVLTHLDRFDNVKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVRRV 600
            K  ++NP+AF V+ +GK ++  QRNLD+A +KE VPQVDR E+ PPPV VVVMGP GSGK+TLIRSL+K YT HN+ E  GP+TV+SGK+RRITF ECP+DL  M+DLAK+ADLVLL+VD SFGFEMETFEFLN+LQV GFPKVM +LTHLD+F N K+LR TKK+LK+RFWTE+Y GAK+F   G ++ KYPK E+  +
Sbjct:   37 KNAKNNPKAFGVSKIGKAKRMTQRNLDKAHQKEYVPQVDRMEDTPPPVSVVVMGPPGSGKSTLIRSLVKRYTRHNIGEIKGPVTVISGKDRRITFFECPNDLNAMIDLAKIADLVLLMVDASFGFEMETFEFLNILQVSGFPKVMGILTHLDKFKNNKSLRQTKKRLKSRFWTEIYQGAKLFYFSGIVSNKYPKGEINNM 236
[Close]
BLAST of mRNA_S-dermatodea_contig914.17214.1 vs. uniprot
Match: A0A2D4C029_PYTIN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C029_PYTIN)

HSP 1 Score: 271 bits (694), Expect = 5.660e-83
Identity = 135/198 (68.18%), Postives = 157/198 (79.29%), Query Frame = 1 
Query:    7 ERHNPRAFSVTNLGKTRKAQQRNLDRAQRKEVVPQVDRAEEVPPPVMVVVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITFEECPDDLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLNMLQVHGFPKVMCVLTHLDRFDNVKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVRRV 600
            +R NP+AF V   GK RK  QRNLDRA RKE VPQV+RAEE PPP+ VVVMGP GSGK+TLIRSL+K YT HN+ E  GP+TV+SGK+RRITF ECP DL  M+DLAK+ADLVLL++D SFGFEMETFEFLN+LQV GFPKVM +LTHLDRF   K+LR TKK+LK RFWTE+Y GAK+F   G    KYPK E+  +
Sbjct:   42 QRKNPKAFGVAKAGKARKQIQRNLDRAHRKEYVPQVNRAEETPPPISVVVMGPPGSGKSTLIRSLVKRYTRHNMVEIKGPVTVISGKDRRITFIECPXDLNAMIDLAKIADLVLLLIDASFGFEMETFEFLNILQVVGFPKVMGILTHLDRFKKNKSLRKTKKRLKNRFWTEIYQGAKLFYFSGITANKYPKGEIHNL 239
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig914.17214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2C7_9PHAE5.900e-12395.50Bms1-type G domain-containing protein n=2 Tax=Ecto... [more]
W7TXR8_9STRA4.770e-8968.00Ribosome biogenesis protein bms1-like protein (Fra... [more]
I2CPB3_NANGC1.070e-8668.00Ribosome biogenesis protein BMS1 (Fragment) n=1 Ta... [more]
A0A1V9ZFU4_9STRA3.650e-8665.99Ribosome biogenesis protein BMS1 (Fragment) n=1 Ta... [more]
A0A2P4XFU5_9STRA6.850e-8667.68Bms1-type G domain-containing protein (Fragment) n... [more]
A0A8J9SMQ5_PHATR2.720e-8566.01Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A7S4QGR5_9STRA1.400e-8464.68Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S3YEJ2_HETAK3.630e-8467.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A067C0E8_SAPPC2.750e-8366.00Bms1-type G domain-containing protein n=1 Tax=Sapr... [more]
A0A2D4C029_PYTIN5.660e-8368.18Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig914contigS-dermatodea_contig914:17866..23854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.0
Seed ortholog evalue1.3e-105
Seed eggNOG ortholog2880.D7G454
Preferred nameBMS1
KEGG koko:K14569,ko:K15009
KEGG Pathwayko03008,ko04724,map03008,map04724
GOsGO:0000166,GO:0000462,GO:0000469,GO:0000478,GO:0000479,GO:0001882,GO:0001883,GO:0001959,GO:0001960,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006417,GO:0006508,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009605,GO:0009607,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010648,GO:0016032,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018995,GO:0019001,GO:0019048,GO:0019049,GO:0019054,GO:0019056,GO:0019057,GO:0019058,GO:0019079,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019785,GO:0020012,GO:0022613,GO:0023051,GO:0023057,GO:0030430,GO:0030490,GO:0030515,GO:0030682,GO:0030683,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033643,GO:0033646,GO:0033647,GO:0033648,GO:0034248,GO:0034470,GO:0034511,GO:0034641,GO:0034660,GO:0035639,GO:0035821,GO:0036094,GO:0039502,GO:0039503,GO:0039506,GO:0039507,GO:0039519,GO:0039520,GO:0039579,GO:0039604,GO:0039606,GO:0039611,GO:0039644,GO:0039648,GO:0039653,GO:0039656,GO:0039657,GO:0039690,GO:0039694,GO:0042025,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043656,GO:0043657,GO:0044003,GO:0044068,GO:0044073,GO:0044085,GO:0044092,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044359,GO:0044362,GO:0044403,GO:0044413,GO:0044414,GO:0044415,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044501,GO:0045088,GO:0045824,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050690,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051252,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051817,GO:0051832,GO:0051833,GO:0051834,GO:0052026,GO:0052027,GO:0052029,GO:0052031,GO:0052037,GO:0052055,GO:0052056,GO:0052167,GO:0052170,GO:0052173,GO:0052200,GO:0052204,GO:0052205,GO:0052250,GO:0052255,GO:0052261,GO:0052306,GO:0052309,GO:0052312,GO:0052493,GO:0052552,GO:0052553,GO:0052561,GO:0052562,GO:0052564,GO:0052572,GO:0060255,GO:0060338,GO:0060339,GO:0060759,GO:0060761,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0075109,GO:0075111,GO:0075112,GO:0075114,GO:0075136,GO:0075528,GO:0080090,GO:0080134,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.U3 snoRNA binding
EggNOG OGsCOG5192@1,KOG1951@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons5
Model size600
Cds size600
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig914.17214.1prot_S-dermatodea_contig914.17214.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig914 17866..23854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925389.4298484-CDS-S-dermatodea_contig914:17865..179761622925389.4298484-CDS-S-dermatodea_contig914:17865..17976Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig914 17866..17976 +
1694079900.6023242-CDS-S-dermatodea_contig914:17865..179761694079900.6023242-CDS-S-dermatodea_contig914:17865..17976Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig914 17866..17976 +
1622925389.4424458-CDS-S-dermatodea_contig914:18548..186541622925389.4424458-CDS-S-dermatodea_contig914:18548..18654Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig914 18549..18654 +
1694079900.61763-CDS-S-dermatodea_contig914:18548..186541694079900.61763-CDS-S-dermatodea_contig914:18548..18654Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig914 18549..18654 +
1622925389.4645042-CDS-S-dermatodea_contig914:20635..207831622925389.4645042-CDS-S-dermatodea_contig914:20635..20783Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig914 20636..20783 +
1694079900.6331294-CDS-S-dermatodea_contig914:20635..207831694079900.6331294-CDS-S-dermatodea_contig914:20635..20783Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig914 20636..20783 +
1622925389.475299-CDS-S-dermatodea_contig914:22072..222291622925389.475299-CDS-S-dermatodea_contig914:22072..22229Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig914 22073..22229 +
1694079900.6444223-CDS-S-dermatodea_contig914:22072..222291694079900.6444223-CDS-S-dermatodea_contig914:22072..22229Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig914 22073..22229 +
1622925389.48904-CDS-S-dermatodea_contig914:23776..238541622925389.48904-CDS-S-dermatodea_contig914:23776..23854Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig914 23777..23854 +
1694079900.6565278-CDS-S-dermatodea_contig914:23776..238541694079900.6565278-CDS-S-dermatodea_contig914:23776..23854Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig914 23777..23854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig914.17214.1

>prot_S-dermatodea_contig914.17214.1 ID=prot_S-dermatodea_contig914.17214.1|Name=mRNA_S-dermatodea_contig914.17214.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=200bp
KVERHNPRAFSVTNLGKTRKAQQRNLDRAQRKEVVPQVDRAEEVPPPVMV
VVMGPRGSGKTTLIRSLIKLYTGHNLKESTGPITVVSGKNRRITFEECPD
DLCGMVDLAKVADLVLLVVDGSFGFEMETFEFLNMLQVHGFPKVMCVLTH
LDRFDNVKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEVRRV
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mRNA from alignment at S-dermatodea_contig914:17866..23854+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig914.17214.1 ID=mRNA_S-dermatodea_contig914.17214.1|Name=mRNA_S-dermatodea_contig914.17214.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5989bp|location=Sequence derived from alignment at S-dermatodea_contig914:17866..23854+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTGGAGAGGCACAACCCGCGAGCGTTCTCCGTGACCAACCTTGGCAA
GACCCGGAAGGCCCAGCAGCGGAACCTCGACCGAGCTCAGAGGAAAGAAG
TCGTACCCCAGGTGAGTCGGCAGACGTGATACCAGCTGCTAGAAATTATC
CTTGCGTTTTCGACGCCAACCGGTATGACACGGGGTTGATTGGACATACC
GGGCAAGGATGGGGGGGGTAGGTAGCTTGGAGTATATTTAATTTCCTTCA
AAACGCAAAGATAGGTCGACCCCAACGGGAAAGCGCATCCGGATGTTGTG
GGTAGCCTGATGTAGTATTTATAGTATGTATGATCTGGCAGAAGCTATTA
CACGTCCTGCCCGATCTCACGCAGAAGGAACAAACCTGGACGCACTGATT
GGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGAGACATATTTTTAATGA
ATTATTTCATTCGTTCATTAGCACTTAGCACACGAAATATGACCAGCCGA
TCGGCTTTACCCCGACCCGACTTGTGGTCAGATGATGTACAGCACAAGAG
GCAAAAAATAAAAACAATTAATCAGAACTCTGCTTCTACTATTTCAGCAA
TACCCAGCCTATTATATAAAATTCCGCTCGGCCCTCACAGCCCAATGTAT
TGCCCTTTCACTCGCGCTATATTTCCCTAACAGGTTGACCGCGCCGAGGA
GGTGCCGCCGCCGGTGATGGTCGTCGTGATGGGACCGCGGGGATCCGGAA
AGACTACTCTGATCCGATCACTCATCAAGCTCTACACCGGTATGATTTAG
CACCAGGGCTTGTCGCGTGACCCGCGAGAATACACACGTCTATTTTCGTG
ATGAGCGCCAAAACTGGTTCGCGGTAGAGGGTAGAGTGTAAGATTTTTTA
GTATTGTCCCACCGGTTGGCGATTCGTAAGTGTACTGTAGTGTGAGTTTG
TTTTTGGTCGGCGCTGGCAGGGCAATATCATAGCGCAAGTAAGAGAAAAC
AGAAATGCCCAAACCGGCTGGGGGTTGGTTGGTATTTACGGAGGTACACT
ATAATCAAGTAATGAGGACCACACCTCACGGCCATGAATACAATACTATA
CCCAACTGTTATATTCCTATTAATACTAATATTAATACCATGAACATCCA
AACAACAACAACAAAAATCTCACGACGAAAGAAAAATCAAAACGCGAGGG
CTGTGGCCTTATACAAGAAACACCGACCACGAAATCTAAAAAATTCAAAT
TCCAGCCTAGAATATTTCGTTTCTTCCAAGTTGAGACGAGACTCGACGCA
AATTTGGACCTGTTATTATTTGGCCCAGGAACGGCCAAGTAAGTGTGTTG
TTTTTGGTCGGCGCTGGCAGGGTGCGATAAGAGCGTGAGAGATGACAAAA
ATTCCCAAACGGGTTGGCGGTTGGTTGGTACAGTAGTTGGTAGTGTAGTG
TGAGATTGCTTGGCCGCTCCTGGTACTGTAGGGTACTGGAGGGTACTGGA
GGTAACTGTAGGGTACTGGAGGGTAGTGACCCATCTTAACCGGCCATGTG
AAAATCCCCGGTACATTTCAAATTGCCGGGATGTTGGCGTAGCGCTTGAG
TTTCGCGGTGGCTATTTAGTGGGTGGTCACGTAGCCACGGCTAGGCCCGT
GCGGCGTTCGTCGGGTGTGGCCGAACGGGCGAACCGGCGACATATGCGAA
AACATGCTTCAAAATATGTGGTACCACGTGGTAGGTAGTATGAACCCTTT
TTGGGACTAAGGCTGTTTTCGGGGAACTGGTTGCTATTATTAGATACCCT
TTTGTTTTGGGACTAAGGCTGTTTTCGGGTAACTGTTAGCTATTAATTAT
AGTAGCCAACAGTTACCCGAAAACAGGCTTCGTCCCCAGGCTTAGTCCGA
AAAGGGTAAGTAAATAACAGGAAACAGTAACAGTTACCCGAAAACAGCCT
TAGCCCGAAAAGGGTTAAGCCCTATGATGTTGATTTTGGCATCAGGTATA
TTGCGGAGGGCCTGAGTTTACAGGTCAAAACCTCATGGCCAAGAATACCC
AACTATTCCGACTACTGTATGAATACTAATACTACAGTATCAATACCCAA
ACAACAAATTAAATAAAATCTCGTGAAAAACAAAAAATCACAAGATATTG
CCATATTCAAGAACAACGATCGACCTTGAAAGCTCGATGATAATTCCAGC
CTATTCTCATTTTTCGAGGTTGAGACTTGTGGCAAATTTGGACCTGTTAA
CTGTTGTCCTCAGCAATAGTATGTGAGCCCTATGATGTTGATTTTGGCAT
GACCGAGGGAGCACGGTCCGACTCCCGATTCACCTTCTGGCGTGTTATCT
GGGGCTACTATTTACTATTCTTGTGCTGTTGATAGTAAGTACCTGGTACC
AGGGACGGTAGTGCTGTGTTGTAGGAGTAGAGTCATGACTTGCTTATTTT
GTCTTTGACTCTTTGGCATTACTGTATATAGCATCTGACCACAAGTCGGG
TCGGATTAAGCCCCGATGCGGCTATACGTGTGCAAAGCAATCAATCAAAT
CAAATCAAATCGAATCGAGTCAATCAACCAATCAAGGGCATCTCGAAAAC
GCGTGTATATCTCAGAACGCTTAAAGCGTATGTCAATCAATAAAGTTAAC
GCTGAGAATAACAAATCCTCCCTCCCTTCCTCCTCTTCCTCCTGCGCACA
TGCTCGCTTTGCGCCGCGTTGCCCCATGTGTGTGTGTGTGTGTGTGTTTT
TTTTTTTTTTTCTCGTTCAGGGCACAACCTTAAAGAGTCGACGGGGCCAA
TCACCGTGGTTAGCGGAAAGAACCGGCGGATAACTTTCGAGGAGTGCCCT
GACGATCTCTGCGGCATGGTTGATCTCGCCAAGGTGGCCGACCTCGTGCT
TCTCGTCGTCGATGGAAGGTCTGTCTGTCTTGTCTCTGTCTGTCTGTCTG
TCTGTCTCTCTCTCTCTTAATGTTGTTGCTCTATTGTGACTAAGGTGTTA
TCATACCTCTTATACATGAGGTGCATGTCTTTTGTGTGTGTGTCTGTCTC
TCTTTCTCTCTCTCTGTCTTTTTTTTGCTGCTGTTTTTTCTGTTGTGAAT
AAGGCTGTATCTCTGTTGTGTGTGTTTGTATATTGTACATATGGTAACCA
TTATTTCTAGTGCAAAACAAAAATGGCGGCGGGCCGGTCGGTTGTAAGTG
TGACAATCAATAAAATCAATCAAAATACAAATAAAAATATACTCTAGGGT
GTACGTGCCTCTTTTGTTGGCTTATGTTTGGTACTCCGCCAGGAGTACTC
ATGAGCATATCATAGTATTCGGTGTATCGCACATATACCGTCGTGTATGT
TTTATGCGTGAGGCGCTTTTGCGTTCGCGTGGTGTTTTAAAGTATTTTCG
CGGGACCTGGAGGATAGTCACGCCTAGTGAATGTGCAACATTTGGTTGCC
CGGTATGTCCGATCAACCCATGGTATATCGGTTTGCCGTCGCAAACGCAA
GCATTTGATTGATTGATTGATTGATTGATTGATTGATTGTCACACATTCA
ACCGACCGGCCCGCCATTTTTGCAACTGCAAATTAAAATTGGATGCTGAT
CCCGCTAACTCGTGGTGACGTCACATGAAGGCACAAGCAAAGAGCAATTG
AAAATCCAGCACCCCTACGCCGAACAAAAAGCTGGTGTCCAGACTATGGC
TACAGCAGCTGGTATGATGTCATTCTTGTGAAACGCAGCCTGTCCGGCGA
ACCGAAAAAAAACGGCACATCCCTTCTCTGCTCCGGCATTGTCTGGGTAT
ACGACATGCGTTTAACCCTTTTGGGACCGAGCCTGTATACGATATACTAT
ATATAGCCATCTGCCCGCACTATACCTCACATGGAACAGGTACAGTACCC
AAACGGTGGATACTATATACTATATACTCCGGAGTACTATATAGCCATTT
GCCCGCACTATACCTCACATGGAACAGGTACAGTACCCGAACGGTGGATA
CTATATACTATATACTATATAGCCATTTGCCCGCACTATACCTCACATGG
AACAGGTACAGTACCCAAACGGTGGATACTAAAATACTCACTGACGGCAT
AACCCAGAAAACAGTTCGGTCCCAAAAGAGTTAACATGAGTACCCCCCAC
CCCTCCCCTCCCCTCCCCCTCGCCTCCCTCTTCCCTCCACCCCCGCACCC
ACCTAAGCTTCGGGTTCGAGATGGAAACGTTTGAGTTTTTGAACATGCTT
CAGGTTCACGGGTTTCCCAAGGTAATGTGCGTACTTACTCACCTTGATCG
GTTCGACAACGTGAAGACGCTCAGGGCGACGAAGAAGAAGCTGAAGACCA
GATTCTGGACGGAGGTGTGAAAAAGCAAAGCCACCGAAAAATCGAGGAAT
AGCAGAAATATTTGAACGCTTGTGTATTTGCATGGATTTTCCGGGGGGGG
GTTGGGGGGGAGGGGTTGGCTACATTTGTCTGCATGCTTGTTTTTGTTGC
CGCTTTGCACAAACAGGCACAACAGCAATTCACTGTACGCTGTTGCACCC
TATGAATAGTATTACTAGTGTTAATAGTAAATAAAGTACACGGCTTATAC
GTGTACGCTACACTGCGATCTGCACCTTTGATTCCAAGGTGTGTAGAAGT
AAATTTCTGATTATTTCCGGGGGGGTCCGGGGGGGGGGGGGGGGGGGGGA
AAAAGTTGTAGGGAGTGGAAGAAAAGGGAGGTTGGTTGTGTTGGAAAGAG
AAGTCATGTAAAAAGCATTGTAGTGATTAAAATCAAAAAAAAGTNNNNNN
NNNNGAGGGTGGGTGGTGGTAGGGGGAGTACGTAGGGGAGGGAGGGGGAG
GGGTGGGGGGTGTGGTGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGTAGCACATGAATCCTGCAATAAAAGGA
GAGCTGTTTGTTGTACTGAGCAGTCATTTTGACAACAGAGCAGTCATTTC
ACAACAATCAGACAAAGGTAGTATGGGTGTACTATGTGAGACTCACCAAA
GAATCGAGCAGAAAGGCTCAATCAAGATAATAGATACAATAACAGTATGT
GGTAGGAAAGGAACATATCATATTATTGGCTCATAAAAGCGCAGCAAAGA
TTCATCACCAGGATATACCCCAGGACAAAGACTCATGTCCTGTAGGATGC
CATAACCATATAACATCATACCACATGATACGACACCATACCATCATACT
TAAGTATGTAACAAGTGAGCCTCCATAGGTGTAGCTTGGACAATCTTCCC
TCTAGAAAAGGTGGGACCCCAACGCTACTCCTTAACTCTTTGTTACAAGT
ACTGTAGCATAGCATCTGACACCATGGCTTAGACCCTTGCATCCGCCCAC
GGCGATCTAGCAAACCTTCGATTTCGTTTTTTATCGGGCATCGGGGTCCC
TATCGACTACAGTATCACACCCCTGTATTTCATCTTATGTGCATGCTGTA
ATAATCGCTTGTCGTGCTTTTATGAAAGACAAGCTGTCAAATGTCATGGA
CCACCGATGCCGCTATTATAAGAGATTAACTCTTCAATCTCTCGGGGCCC
ACTCATGATTTTTTTTCTTTTTCTTTTTTCACACAGTCCGAACAAACGCT
CGTATTGGTTCACGGAAATGCACAAAAAAAAAAAGCACAAACTCTCGAAT
CGAAAGCGTCGAGATGGTTTTTCATCAAAGAATATAGAATAATCCAACTT
CTCGAATCGTCGATGATATACTGTGTATGCCTGTATCAAAGCGAAATCCT
TTCCCCCGGATCACCGATGCTTTCATGCACAATAAGCAATCCAATACGTG
GGATTATTGATTATTGGGTAGTGTGCTTGTTCTAATATGAGGACGGGACT
GTTTGGCGCAGGTGTACAATGGAGCGAAGGTGTTCGGAATGGGCGGCGAG
ATTAACGGAAAGTACCCTAAGACCGAGGTGCGTCGCGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig914:17866..23854+

>mRNA_S-dermatodea_contig914.17214.1 ID=mRNA_S-dermatodea_contig914.17214.1|Name=mRNA_S-dermatodea_contig914.17214.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at S-dermatodea_contig914:17866..23854+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTGGAGAGGCACAACCCGCGAGCGTTCTCCGTGACCAACCTTGGCAA
GACCCGGAAGGCCCAGCAGCGGAACCTCGACCGAGCTCAGAGGAAAGAAG
TCGTACCCCAGAAGGTGGAGAGGCACAACCCGCGAGCGTTCTCCGTGACC
AACCTTGGCAAGACCCGGAAGGCCCAGCAGCGGAACCTCGACCGAGCTCA
GAGGAAAGAAGTCGTACCCCAGGTTGACCGCGCCGAGGAGGTGCCGCCGC
CGGTGATGGTCGTCGTGATGGGACCGCGGGGATCCGGAAAGACTACTCTG
ATCCGATCACTCATCAAGCTCTACACCGGTTGACCGCGCCGAGGAGGTGC
CGCCGCCGGTGATGGTCGTCGTGATGGGACCGCGGGGATCCGGAAAGACT
ACTCTGATCCGATCACTCATCAAGCTCTACACCGGGCACAACCTTAAAGA
GTCGACGGGGCCAATCACCGTGGTTAGCGGAAAGAACCGGCGGATAACTT
TCGAGGAGTGCCCTGACGATCTCTGCGGCATGGTTGATCTCGCCAAGGTG
GCCGACCTCGTGCTTCTCGTCGTCGATGGAAGGGCACAACCTTAAAGAGT
CGACGGGGCCAATCACCGTGGTTAGCGGAAAGAACCGGCGGATAACTTTC
GAGGAGTGCCCTGACGATCTCTGCGGCATGGTTGATCTCGCCAAGGTGGC
CGACCTCGTGCTTCTCGTCGTCGATGGAAGCTTCGGGTTCGAGATGGAAA
CGTTTGAGTTTTTGAACATGCTTCAGGTTCACGGGTTTCCCAAGGTAATG
TGCGTACTTACTCACCTTGATCGGTTCGACAACGTGAAGACGCTCAGGGC
GACGAAGAAGAAGCTGAAGACCAGATTCTGGACGGAGCTTCGGGTTCGAG
ATGGAAACGTTTGAGTTTTTGAACATGCTTCAGGTTCACGGGTTTCCCAA
GGTAATGTGCGTACTTACTCACCTTGATCGGTTCGACAACGTGAAGACGC
TCAGGGCGACGAAGAAGAAGCTGAAGACCAGATTCTGGACGGAGGTGTAC
AATGGAGCGAAGGTGTTCGGAATGGGCGGCGAGATTAACGGAAAGTACCC
TAAGACCGAGGTGCGTCGCGTCGTGTACAATGGAGCGAAGGTGTTCGGAA
TGGGCGGCGAGATTAACGGAAAGTACCCTAAGACCGAGGTGCGTCGCGTC
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