mRNA_S-dermatodea_contig91196.17193.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91196.17193.1
Unique NamemRNA_S-dermatodea_contig91196.17193.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig91196.17193.1 vs. uniprot
Match: D8LDT1_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT1_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 2.600e-7
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 IMVFYRWRRRQIYDAFYRLTDPQAQIRSYVYDVVRS 108
            + V Y+  + +IYDAFYRLTDPQAQIRSYV+DVVRS
Sbjct:  181 VSVQYQPIKEKIYDAFYRLTDPQAQIRSYVFDVVRS 216
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BLAST of mRNA_S-dermatodea_contig91196.17193.1 vs. uniprot
Match: A0A6H5KBQ9_9PHAE (PHB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBQ9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.540e-7
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 IMVFYRWRRRQIYDAFYRLTDPQAQIRSYVYDVVRS 108
            + V Y+  + +IYDAFYRLTDP+AQIRSYVYDVVRS
Sbjct:  140 VSVQYQPIKSKIYDAFYRLTDPKAQIRSYVYDVVRS 175
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BLAST of mRNA_S-dermatodea_contig91196.17193.1 vs. uniprot
Match: A0A835YL74_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL74_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.050e-6
Identity = 21/26 (80.77%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:   31 QIYDAFYRLTDPQAQIRSYVYDVVRS 108
            ++YDAFYRLTDP++QIRSYVYDV+RS
Sbjct:   82 KVYDAFYRLTDPKSQIRSYVYDVIRS 107
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BLAST of mRNA_S-dermatodea_contig91196.17193.1 vs. uniprot
Match: A0A7S2WGS4_9STRA (Hypothetical protein n=3 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WGS4_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 7.740e-6
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 IMVFYRWRRRQIYDAFYRLTDPQAQIRSYVYDVVRS 108
            + V YR      YDA+YRLTDP+AQI+SYVYDV+RS
Sbjct:   74 VAVQYRVVASSAYDAYYRLTDPEAQIKSYVYDVIRS 109
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BLAST of mRNA_S-dermatodea_contig91196.17193.1 vs. uniprot
Match: A0A0M8KP65_9MICO (Putative stomatin/prohibitin-family membrane protease subunit YbbK n=5 Tax=Brachybacterium TaxID=43668 RepID=A0A0M8KP65_9MICO)

HSP 1 Score: 47.8 bits (112), Expect = 3.910e-5
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 IMVFYRWRRRQIYDAFYRLTDPQAQIRSYVYDVVRS 108
            + V YR R  Q+ DA+Y+L++P+AQIRSYV+D VRS
Sbjct:   98 VAVQYRIREEQVVDAYYKLSNPEAQIRSYVFDTVRS 133
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BLAST of mRNA_S-dermatodea_contig91196.17193.1 vs. uniprot
Match: C7MI45_BRAFD (Membrane protease subunit, stomatin/prohibitin n=5 Tax=Actinomycetia TaxID=1760 RepID=C7MI45_BRAFD)

HSP 1 Score: 47.8 bits (112), Expect = 3.910e-5
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 IMVFYRWRRRQIYDAFYRLTDPQAQIRSYVYDVVRS 108
            + V YR R  Q+ DA+Y+L++P+AQIRSYV+D VRS
Sbjct:   98 VAVQYRIREEQVIDAYYKLSNPEAQIRSYVFDTVRS 133
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BLAST of mRNA_S-dermatodea_contig91196.17193.1 vs. uniprot
Match: A0A345YJY7_9MICO (SPFH domain-containing protein n=1 Tax=Brachybacterium saurashtrense TaxID=556288 RepID=A0A345YJY7_9MICO)

HSP 1 Score: 47.8 bits (112), Expect = 3.910e-5
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 IMVFYRWRRRQIYDAFYRLTDPQAQIRSYVYDVVRS 108
            + V YR R  Q+ DA+Y+L++P+AQIRSYV+D VRS
Sbjct:   98 VAVQYRIREEQVVDAYYKLSNPEAQIRSYVFDTVRS 133
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BLAST of mRNA_S-dermatodea_contig91196.17193.1 vs. uniprot
Match: A0A7X9CCJ3_9ACTO (SPFH domain-containing protein (Fragment) n=1 Tax=Actinomycetales bacterium TaxID=1911520 RepID=A0A7X9CCJ3_9ACTO)

HSP 1 Score: 47.8 bits (112), Expect = 3.910e-5
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 IMVFYRWRRRQIYDAFYRLTDPQAQIRSYVYDVVRS 108
            + V YR R  Q+ DA+Y+L++P+AQIRSYV+D VRS
Sbjct:   98 VAVQYRIREEQVVDAYYKLSNPEAQIRSYVFDTVRS 133
[Close]
BLAST of mRNA_S-dermatodea_contig91196.17193.1 vs. uniprot
Match: A0A7Y2HKI7_9BACT (SPFH domain-containing protein n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y2HKI7_9BACT)

HSP 1 Score: 46.6 bits (109), Expect = 9.950e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 IMVFYRWRRRQIYDAFYRLTDPQAQIRSYVYDVVRSE 111
            + V Y+  R  IYDAFY+L DPQ QI +YV+DVVR+E
Sbjct:   86 VSVQYKILRDNIYDAFYKLQDPQDQITAYVFDVVRAE 122
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BLAST of mRNA_S-dermatodea_contig91196.17193.1 vs. uniprot
Match: N1WUK6_9FLAO (Stomatin/prohibitin-family membrane protease subunit HflC n=4 Tax=Psychroflexus TaxID=83612 RepID=N1WUK6_9FLAO)

HSP 1 Score: 46.6 bits (109), Expect = 9.960e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 IMVFYRWRRRQIYDAFYRLTDPQAQIRSYVYDVVRSE 111
            + V Y+  R +IYDAFY+L  P AQI SYV+DVVR+E
Sbjct:   85 VSVQYQVTRAKIYDAFYKLESPSAQITSYVFDVVRAE 121
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91196.17193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LDT1_ECTSI2.600e-772.22PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBQ9_9PHAE3.540e-772.22PHB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YL74_9STRA3.050e-680.77Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A7S2WGS4_9STRA7.740e-663.89Hypothetical protein n=3 Tax=Eucampia antarctica T... [more]
A0A0M8KP65_9MICO3.910e-558.33Putative stomatin/prohibitin-family membrane prote... [more]
C7MI45_BRAFD3.910e-558.33Membrane protease subunit, stomatin/prohibitin n=5... [more]
A0A345YJY7_9MICO3.910e-558.33SPFH domain-containing protein n=1 Tax=Brachybacte... [more]
A0A7X9CCJ3_9ACTO3.910e-558.33SPFH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7Y2HKI7_9BACT9.950e-559.46SPFH domain-containing protein n=1 Tax=Saprospirac... [more]
N1WUK6_9FLAO9.960e-559.46Stomatin/prohibitin-family membrane protease subun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91196contigS-dermatodea_contig91196:285..398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size111
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925387.9887831-UTR-S-dermatodea_contig91196:284..2871622925387.9887831-UTR-S-dermatodea_contig91196:284..287Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91196 285..287 +
1694079899.7316089-UTR-S-dermatodea_contig91196:284..2871694079899.7316089-UTR-S-dermatodea_contig91196:284..287Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91196 285..287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925388.0026474-CDS-S-dermatodea_contig91196:287..3981622925388.0026474-CDS-S-dermatodea_contig91196:287..398Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91196 288..398 +
1694079899.74023-CDS-S-dermatodea_contig91196:287..3981694079899.74023-CDS-S-dermatodea_contig91196:287..398Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91196 288..398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91196.17193.1prot_S-dermatodea_contig91196.17193.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91196 288..398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91196.17193.1

>prot_S-dermatodea_contig91196.17193.1 ID=prot_S-dermatodea_contig91196.17193.1|Name=mRNA_S-dermatodea_contig91196.17193.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=37bp
MVFYRWRRRQIYDAFYRLTDPQAQIRSYVYDVVRSE*
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mRNA from alignment at S-dermatodea_contig91196:285..398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91196.17193.1 ID=mRNA_S-dermatodea_contig91196.17193.1|Name=mRNA_S-dermatodea_contig91196.17193.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at S-dermatodea_contig91196:285..398+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATAATGGTGTTCTATCGTTGGCGCCGGCGGCAGATCTACGATGCTTTCTA
CCGCCTCACGGACCCCCAGGCGCAGATCCGCTCCTACGTCTACGACGTGG
TTCGAAGTGAGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig91196:285..398+

>mRNA_S-dermatodea_contig91196.17193.1 ID=mRNA_S-dermatodea_contig91196.17193.1|Name=mRNA_S-dermatodea_contig91196.17193.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at S-dermatodea_contig91196:285..398+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGTTCTATCGTTGGCGCCGGCGGCAGATCTACGATGCTTTCTACCG
CCTCACGGACCCCCAGGCGCAGATCCGCTCCTACGTCTACGACGTGGTTC
GAAGTGAGTGAATGGTGTTCTATCGTTGGCGCCGGCGGCAGATCTACGAT
GCTTTCTACCGCCTCACGGACCCCCAGGCGCAGATCCGCTCCTACGTCTA
CGACGTGGTTCGAAGTGAGTGA
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