mRNA_S-dermatodea_contig91046.17185.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91046.17185.1
Unique NamemRNA_S-dermatodea_contig91046.17185.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig91046.17185.1 vs. uniprot
Match: A0A8F6U2N5_CRASO (DNA polymerase n=1 Tax=Craspedacusta sowerbii TaxID=128124 RepID=A0A8F6U2N5_CRASO)

HSP 1 Score: 60.8 bits (146), Expect = 1.340e-7
Identity = 51/150 (34.00%), Postives = 77/150 (51.33%), Query Frame = 1 
Query:    1 KNATHYDINSLYTYVMLKTMPVELINRHQSGYLKFGFGLVRVLSVPK-----TFILN-----------FYQK---SGPLVLFSEELKYYQKLGCRFEILESYEFANKI-LFTKFVAHFFFVRKNSGNKLLKTNAKAILNSLYGKFATKTN 390
            K    +DINSLY + ML  +PV      ++  L+  FG V V S+ K     + I N           + +K   S P++LFSEE KY QKLG   +I    E+ +   +F KF+ +F+ ++K S +     +AK I+NSLYG+   + N
Sbjct:  231 KGVLGFDINSLYPFCMLNKLPVGEPKFKKNVILEDFFGFVYVKSLKKLSRGASVIGNNSNHSLPPSAPYEEKLLSSTPMILFSEEAKYAQKLGYLIDIRWGIEYESSFSVFHKFINYFYNLKK-SHHSTNSISAKLIMNSLYGRLGMRKN 379
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BLAST of mRNA_S-dermatodea_contig91046.17185.1 vs. uniprot
Match: A0A8F1N7G4_CRASO (DNA-directed DNA polymerase n=1 Tax=Craspedacusta sowerbii TaxID=128124 RepID=A0A8F1N7G4_CRASO)

HSP 1 Score: 57.0 bits (136), Expect = 2.810e-6
Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 1 
Query:   16 YDINSLYTYVMLKTMPVELINRHQSGYLKFGFGLVRVLSVPK-----TFILN-----------FYQK---SGPLVLFSEELKYYQKLGCRFEILESYEFANKI-LFTKFVAHFFFVRKNSGNKLLKTNAKAILNSLYGKFATKTN 390
            +D+NSLY   ML  +PV      ++  L+  FG V V S+ +     + I N           + +K   S P++LFSEE KY QKLG   E+    E+ +   +F KF+ +F+ ++K S + +   +AK I+NSLYG+   + N
Sbjct:  242 FDVNSLYPSCMLNRLPVGEPKFKKTIILEDFFGFVYVKSLKRANRGPSVIGNDSDYPVAASPPYEEKLLSSTPMILFSEEAKYAQKLGYLVEVGWGIEYESSFSVFHKFINYFYNLKK-SHHSMNSISAKLIMNSLYGRLGMRKN 385
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91046.17185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A8F6U2N5_CRASO1.340e-734.00DNA polymerase n=1 Tax=Craspedacusta sowerbii TaxI... [more]
A0A8F1N7G4_CRASO2.810e-633.10DNA-directed DNA polymerase n=1 Tax=Craspedacusta ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91046contigS-dermatodea_contig91046:51..596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.6
Seed ortholog evalue3.5e-09
Seed eggNOG ortholog31870.EFQ24845
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGs28ZYQ@1,2R0SW@2759,3A6RA@33154,3P585@4751
COG Functional cat.H
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925387.3551888-CDS-S-dermatodea_contig91046:50..5961622925387.3551888-CDS-S-dermatodea_contig91046:50..596Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91046 51..596 +
1694079899.2692928-CDS-S-dermatodea_contig91046:50..5961694079899.2692928-CDS-S-dermatodea_contig91046:50..596Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91046 51..596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91046.17185.1prot_S-dermatodea_contig91046.17185.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91046 51..596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91046.17185.1

>prot_S-dermatodea_contig91046.17185.1 ID=prot_S-dermatodea_contig91046.17185.1|Name=mRNA_S-dermatodea_contig91046.17185.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=182bp
KNATHYDINSLYTYVMLKTMPVELINRHQSGYLKFGFGLVRVLSVPKTFI
LNFYQKSGPLVLFSEELKYYQKLGCRFEILESYEFANKILFTKFVAHFFF
VRKNSGNKLLKTNAKAILNSLYGKFATKTNRRNLLQLSLAINSYAKVEIF
QYRVRSEFCYSDTDSIVYLIPLANRYISRDIG
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mRNA from alignment at S-dermatodea_contig91046:51..596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91046.17185.1 ID=mRNA_S-dermatodea_contig91046.17185.1|Name=mRNA_S-dermatodea_contig91046.17185.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig91046:51..596+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAAACGCGACGCATTATGATATCAACAGCCTATACACATACGTAATGTT
AAAAACAATGCCAGTTGAGCTTATAAACAGACATCAATCCGGCTATCTAA
AATTTGGATTCGGGTTAGTGAGGGTTTTGAGTGTCCCAAAAACCTTTATT
CTTAATTTTTATCAAAAATCAGGGCCTCTAGTGCTATTTTCGGAAGAGCT
GAAATACTATCAAAAATTAGGTTGTCGGTTTGAAATTTTGGAATCATATG
AATTTGCAAATAAAATTTTATTTACCAAATTTGTAGCTCATTTTTTTTTT
GTAAGGAAAAATTCTGGAAATAAGTTGTTAAAAACAAATGCAAAAGCAAT
ATTAAATTCGCTGTATGGAAAATTTGCCACAAAAACAAACCGACGAAATT
TGTTACAACTATCATTAGCCATAAATAGTTATGCTAAAGTTGAGATTTTT
CAATATAGAGTGCGTAGTGAATTTTGTTACTCCGACACTGACAGCATTGT
TTATTTAATCCCGTTGGCAAATAGGTATATAAGTCGTGATATCGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig91046:51..596+

>mRNA_S-dermatodea_contig91046.17185.1 ID=mRNA_S-dermatodea_contig91046.17185.1|Name=mRNA_S-dermatodea_contig91046.17185.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at S-dermatodea_contig91046:51..596+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAAACGCGACGCATTATGATATCAACAGCCTATACACATACGTAATGTT
AAAAACAATGCCAGTTGAGCTTATAAACAGACATCAATCCGGCTATCTAA
AATTTGGATTCGGGTTAGTGAGGGTTTTGAGTGTCCCAAAAACCTTTATT
CTTAATTTTTATCAAAAATCAGGGCCTCTAGTGCTATTTTCGGAAGAGCT
GAAATACTATCAAAAATTAGGTTGTCGGTTTGAAATTTTGGAATCATATG
AATTTGCAAATAAAATTTTATTTACCAAATTTGTAGCTCATTTTTTTTTT
GTAAGGAAAAATTCTGGAAATAAGTTGTTAAAAACAAATGCAAAAGCAAT
ATTAAATTCGCTGTATGGAAAATTTGCCACAAAAACAAACCGACGAAATT
TGTTACAACTATCATTAGCCATAAATAGTTATGCTAAAGTTGAGATTTTT
CAATATAGAGTGCGTAGTGAATTTTGTTACTCCGACACTGACAGCATTGT
TTATTTAATCCCGTTGGCAAATAGGTATATAAGTCGTGATATCGGAAAAA
ACGCGACGCATTATGATATCAACAGCCTATACACATACGTAATGTTAAAA
ACAATGCCAGTTGAGCTTATAAACAGACATCAATCCGGCTATCTAAAATT
TGGATTCGGGTTAGTGAGGGTTTTGAGTGTCCCAAAAACCTTTATTCTTA
ATTTTTATCAAAAATCAGGGCCTCTAGTGCTATTTTCGGAAGAGCTGAAA
TACTATCAAAAATTAGGTTGTCGGTTTGAAATTTTGGAATCATATGAATT
TGCAAATAAAATTTTATTTACCAAATTTGTAGCTCATTTTTTTTTTGTAA
GGAAAAATTCTGGAAATAAGTTGTTAAAAACAAATGCAAAAGCAATATTA
AATTCGCTGTATGGAAAATTTGCCACAAAAACAAACCGACGAAATTTGTT
ACAACTATCATTAGCCATAAATAGTTATGCTAAAGTTGAGATTTTTCAAT
ATAGAGTGCGTAGTGAATTTTGTTACTCCGACACTGACAGCATTGTTTAT
TTAATCCCGTTGGCAAATAGGTATATAAGTCGTGATATCGGA
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