mRNA_S-dermatodea_contig9084.17163.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9084.17163.1
Unique NamemRNA_S-dermatodea_contig9084.17163.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9084.17163.1 vs. uniprot
Match: D7FYK4_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYK4_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 6.510e-13
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 GKKFLTSWETIMHQGNSMLASMFKGAFKCATDEDGFAFIDRDGKQLCILLRYCK 162
            GKKFLTS  TIM  GN MLASMF+G F   TDE+GFAFIDRDG++   +L + +
Sbjct:   39 GKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLR 92
[Close]
BLAST of mRNA_S-dermatodea_contig9084.17163.1 vs. uniprot
Match: R1CKZ4_EMIHU (Peptidylprolyl isomerase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CKZ4_EMIHU)

HSP 1 Score: 54.7 bits (130), Expect = 4.270e-7
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 GKKFLTSWETIMHQGNSMLASMFKGAFKCATDEDGFAFIDRDGKQLCILLRYCKSGRYDKVTAT 192
            G KF T+  T+     SML +MF G  +   D++G+ FIDRDGKQ   +L + ++G  D  ++T
Sbjct:   56 GSKFETTLTTLTRYPESMLGAMFSGRHEVPPDDEGYVFIDRDGKQFGTILNFLRTGTLDVPSST 119
[Close]
BLAST of mRNA_S-dermatodea_contig9084.17163.1 vs. uniprot
Match: A0A7S3THN5_EMIHU (Hypothetical protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3THN5_EMIHU)

HSP 1 Score: 52.4 bits (124), Expect = 2.820e-6
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 GKKFLTSWETIMHQGNSMLASMFKGAFKCATDEDGFAFIDRDGKQLCILLRYCKSG 168
            G +F TS  T+  +  SMLA+MF G  + ATDEDG+ FIDRDG+    +L + ++G
Sbjct:   88 GHRFTTSRTTLCAR-ESMLATMFSGRHQIATDEDGYTFIDRDGRNFHHILNFLRTG 142
[Close]
BLAST of mRNA_S-dermatodea_contig9084.17163.1 vs. uniprot
Match: A0A6C0E9D9_9ZZZZ (BTB domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0E9D9_9ZZZZ)

HSP 1 Score: 50.4 bits (119), Expect = 1.110e-5
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    1 GKKFLTSWETIMHQGNSMLASMFKGAFKCATDEDGFAFIDRDGKQLCILLRYCKSGR 171
            G  F T+ +T+    +SMLASMF G     TDE+G+ FIDRDGK    +L++ +  +
Sbjct:   11 GVLFQTTQDTLTKDSDSMLASMFSGRHPLKTDENGYHFIDRDGKLFEYILKFLRDDK 67
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9084.17163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FYK4_ECTSI6.510e-1361.11BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
R1CKZ4_EMIHU4.270e-739.06Peptidylprolyl isomerase n=1 Tax=Emiliania huxleyi... [more]
A0A7S3THN5_EMIHU2.820e-646.43Hypothetical protein (Fragment) n=2 Tax=Emiliania ... [more]
A0A6C0E9D9_9ZZZZ1.110e-542.11BTB domain-containing protein n=1 Tax=viral metage... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9084contigS-dermatodea_contig9084:8444..8635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue5.6e-10
Seed eggNOG ortholog2880.D7FYK4
KEGG koko:K21919,ko:K21922
EggNOG free text desc.protein homooligomerization
EggNOG OGsKOG2716@1,KOG2716@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925385.2166142-CDS-S-dermatodea_contig9084:8443..86351622925385.2166142-CDS-S-dermatodea_contig9084:8443..8635Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9084 8444..8635 +
1694079897.8579316-CDS-S-dermatodea_contig9084:8443..86351694079897.8579316-CDS-S-dermatodea_contig9084:8443..8635Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9084 8444..8635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9084.17163.1prot_S-dermatodea_contig9084.17163.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9084 8444..8635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9084.17163.1

>prot_S-dermatodea_contig9084.17163.1 ID=prot_S-dermatodea_contig9084.17163.1|Name=mRNA_S-dermatodea_contig9084.17163.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp
GKKFLTSWETIMHQGNSMLASMFKGAFKCATDEDGFAFIDRDGKQLCILL
RYCKSGRYDKVTAT
back to top

mRNA from alignment at S-dermatodea_contig9084:8444..8635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9084.17163.1 ID=mRNA_S-dermatodea_contig9084.17163.1|Name=mRNA_S-dermatodea_contig9084.17163.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at S-dermatodea_contig9084:8444..8635+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCAAGAAGTTCTTGACGTCGTGGGAGACGATAATGCACCAGGGCAACTC
CATGCTGGCCTCGATGTTCAAGGGCGCCTTCAAGTGCGCGACTGATGAGG
ACGGGTTCGCGTTCATCGATAGAGACGGTAAGCAATTATGCATTCTACTA
CGATACTGTAAAAGTGGGCGGTATGATAAAGTCACGGCTACG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9084:8444..8635+

>mRNA_S-dermatodea_contig9084.17163.1 ID=mRNA_S-dermatodea_contig9084.17163.1|Name=mRNA_S-dermatodea_contig9084.17163.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at S-dermatodea_contig9084:8444..8635+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCAAGAAGTTCTTGACGTCGTGGGAGACGATAATGCACCAGGGCAACTC
CATGCTGGCCTCGATGTTCAAGGGCGCCTTCAAGTGCGCGACTGATGAGG
ACGGGTTCGCGTTCATCGATAGAGACGGTAAGCAATTATGCATTCTACTA
CGATACTGTAAAAGTGGGCGGTATGATAAAGTCACGGCTACGGGCAAGAA
GTTCTTGACGTCGTGGGAGACGATAATGCACCAGGGCAACTCCATGCTGG
CCTCGATGTTCAAGGGCGCCTTCAAGTGCGCGACTGATGAGGACGGGTTC
GCGTTCATCGATAGAGACGGTAAGCAATTATGCATTCTACTACGATACTG
TAAAAGTGGGCGGTATGATAAAGTCACGGCTACG
back to top