mRNA_S-dermatodea_contig9074.17157.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9074.17157.1
Unique NamemRNA_S-dermatodea_contig9074.17157.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9074.17157.1 vs. uniprot
Match: A0A6H5L5N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.010e-29
Identity = 96/191 (50.26%), Postives = 116/191 (60.73%), Query Frame = 1 
Query:    1 RKRTSKAIASALAEVTKAERAAETEIVKHQLRNTPALSDSSEDGSKDTARGK-WIVHTGRTSSKRDLRKAKVGRAAVP--APAWVQDFHKMKEQESWASV--ICHDDSAAPASAQATAKP-----REGRTTVSAVLAAAASTP--PPSPG--REGDTA-----IDDEWVVRKLAQIRRRSRSIDSAIGDFA 516
            R+RTS+A+  ALAEV KAERAA+ E V+HQLR+   L D+  DG     RGK W  HT         R+AKVGRA  P  +PAW +DFH+MK + SWAS   I  +    P   +   +P     R G T VSAVLAA A +P  PPS    R+G T      +DD+WVVRK AQIRRRSRSIDSAIGD +
Sbjct:   66 RERTSQAMERALAEVVKAERAAKAETVRHQLRD---LQDNENDGQDH--RGKDWTPHTRVGHRNSWARQAKVGRATGPIRSPAWAKDFHEMKRRASWASALEITMEYEVPPILPEVPLEPPPVPVRRG-TIVSAVLAAVAESPSSPPSTSSERKGKTGNSGPVLDDDWVVRKFAQIRRRSRSIDSAIGDIS 250
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BLAST of mRNA_S-dermatodea_contig9074.17157.1 vs. uniprot
Match: D8LTM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM9_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 8.170e-29
Identity = 96/199 (48.24%), Postives = 117/199 (58.79%), Query Frame = 1 
Query:    1 RKRTSKAIASALAEVTKAERAAETEIVKHQLRNTPALSDSSEDGSKDTARGK-WIVHTGRTSSKRDLRKAKVGRAA--VPAPAWVQDFHKMKEQESWASVI--CHDDSAAPASAQATAKP-----REGRTTVSAVLAAAASTP--PPSPGREGD-------TAIDDEWVVRKLAQIRRRSRSIDSAIGDFATLSPVIKP 540
            R+RTS+A+  ALAEV KA RAA+ E V+HQLR+   L D+ +DG  D  RGK W  HT         RKAKVGRA   V  PAW +DFH+MK + SWAS +    +D   P   +   +P     R G T VSAVLAA A +P  PPS   E +         +DD+WVVRK AQIRRRSR IDSAIGD + L    +P
Sbjct:   66 RERTSQAMERALAEVIKAGRAAQAETVRHQLRD---LHDNEKDGQDD--RGKAWTPHTRVGHRNSWDRKAKVGRATGLVRPPAWAKDFHEMKRRVSWASALESTIEDEVPPFLPEVPLEPPPAPVRRG-TIVSAVLAAVAESPSSPPSTSSERNGTMGNSGPVLDDDWVVRKFAQIRRRSRGIDSAIGDISGLHKQAQP 258
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9074.17157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5N1_9PHAE6.010e-2950.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTM9_ECTSI8.170e-2948.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9074contigS-dermatodea_contig9074:767..2196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size540
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9074.17157.1prot_S-dermatodea_contig9074.17157.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9074 767..2196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925384.772223-CDS-S-dermatodea_contig9074:766..9271622925384.772223-CDS-S-dermatodea_contig9074:766..927Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9074 767..927 +
1694079897.5416036-CDS-S-dermatodea_contig9074:766..9271694079897.5416036-CDS-S-dermatodea_contig9074:766..927Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9074 767..927 +
1622925384.7833922-CDS-S-dermatodea_contig9074:1407..16671622925384.7833922-CDS-S-dermatodea_contig9074:1407..1667Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9074 1408..1667 +
1694079897.5596268-CDS-S-dermatodea_contig9074:1407..16671694079897.5596268-CDS-S-dermatodea_contig9074:1407..1667Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9074 1408..1667 +
1622925384.7942982-CDS-S-dermatodea_contig9074:2077..21961622925384.7942982-CDS-S-dermatodea_contig9074:2077..2196Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9074 2078..2196 +
1694079897.5743077-CDS-S-dermatodea_contig9074:2077..21961694079897.5743077-CDS-S-dermatodea_contig9074:2077..2196Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9074 2078..2196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9074.17157.1

>prot_S-dermatodea_contig9074.17157.1 ID=prot_S-dermatodea_contig9074.17157.1|Name=mRNA_S-dermatodea_contig9074.17157.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=180bp
RKRTSKAIASALAEVTKAERAAETEIVKHQLRNTPALSDSSEDGSKDTAR
GKWIVHTGRTSSKRDLRKAKVGRAAVPAPAWVQDFHKMKEQESWASVICH
DDSAAPASAQATAKPREGRTTVSAVLAAAASTPPPSPGREGDTAIDDEWV
VRKLAQIRRRSRSIDSAIGDFATLSPVIKP
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mRNA from alignment at S-dermatodea_contig9074:767..2196+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9074.17157.1 ID=mRNA_S-dermatodea_contig9074.17157.1|Name=mRNA_S-dermatodea_contig9074.17157.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1430bp|location=Sequence derived from alignment at S-dermatodea_contig9074:767..2196+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAAAGCGCACCAGCAAAGCTATTGCGAGCGCGCTAGCCGAAGTCACCAA
AGCGGAGCGCGCAGCAGAGACCGAGATTGTGAAGCACCAGCTGCGCAACA
CGCCTGCACTTTCCGACAGCAGTGAGGATGGCAGCAAGGATACCGCTCGT
GGAAAGTGGATGTGAGTCACCGTAAGGGGGCGAGTTCCTGTAAATTCCGA
CCTGGCCAGAGGAAGATTGAACCTGTCGTACATTGCTCGGTCGTCCCTTC
AAGGAATGGTGATGGCTTTGCTATGCACAGTCAACGCCTCGTCCGCTGCC
TTTTCCACCGATAAAATTTGATATTATACACTCTTGTCACGACCGAGTAG
GCCGCAGCCAGTCCCATGGGAGTCTCGATACGGCGCCGAAATCATAAGCT
GGTTTCTGCCAGCAGGTGTCATTGGTACATACAATAACCTGGGACGGCAA
AAACCCGGAGCGCCACTCAGCCCGGGGAACGCCGACGTCCGGCCAATCGC
GAAGTTTTGGCGCGGTAAACTATCAGGAAAGCACTCAACGTACATCAAAT
TTCCCTTCGCGTGCCAGGCCTTTAGCTCTTTGTCCAATAACCGCAGCTCG
CTATCAGCACTAACCCATGACTGTTGCAATGACCCCACCAGAGTCCACAC
CGGACGAACGTCCTCGAAGCGTGACCTTCGTAAAGCCAAAGTGGGACGGG
CGGCAGTGCCTGCGCCTGCTTGGGTGCAAGATTTTCATAAGATGAAAGAA
CAAGAATCGTGGGCAAGCGTTATATGTCATGATGACTCCGCTGCGCCAGC
GTCCGCACAGGCAACCGCTAAGCCACGAGAGGGACGAACTACAGTATCGG
CTGTTCTAGCGGCGGCAGCGTCAACTCCGCCCCCCTCCCCGGGGCGGGAA
GGTGGGTACAATGTCATTTTTCCAAGGACACGCGGGGCTAAGATGACATC
CTCGAACGATGCCCGGACACCGCGTTTCGCAAGGGGTCTTTGTTGTTTTC
CCAGGAAATAATAATCCCCTAATAAAATTAAAATTTATAAAACATGGAGC
AAGCGTTGAAGTCGCATATTTTCAAGAGGGAAAATGATCCAAGCTACACC
CATGGAGTCTCACGTGTTGTGTATGATGATATGGTGTCCTAGCATAGCCC
CCCCCCCTCTCCCCCCTGATATGCTTAAGGAGAAAATGCTGGGTGGAAGG
TTTCGCGTAGGGACCACTCGGTCTTCAAACGAGGTGGCGAAAACTCTAAA
GCCTCCAGATATGCCGCGTTCGCAACCGACGTGTCAAACTCGTATTTGTC
GAATATCTCAGGCGACACGGCCATCGATGATGAATGGGTAGTTAGGAAAC
TGGCGCAGATTCGCAGGCGTTCCAGAAGCATCGACTCGGCAATCGGGGAT
TTTGCAACTTTGTCCCCTGTCATCAAGCCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9074:767..2196+

>mRNA_S-dermatodea_contig9074.17157.1 ID=mRNA_S-dermatodea_contig9074.17157.1|Name=mRNA_S-dermatodea_contig9074.17157.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at S-dermatodea_contig9074:767..2196+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAAAGCGCACCAGCAAAGCTATTGCGAGCGCGCTAGCCGAAGTCACCAA
AGCGGAGCGCGCAGCAGAGACCGAGATTGTGAAGCACCAGCTGCGCAACA
CGCCTGCACTTTCCGACAGCAGTGAGGATGGCAGCAAGGATACCGCTCGT
GGAAAGTGGATCGAAAGCGCACCAGCAAAGCTATTGCGAGCGCGCTAGCC
GAAGTCACCAAAGCGGAGCGCGCAGCAGAGACCGAGATTGTGAAGCACCA
GCTGCGCAACACGCCTGCACTTTCCGACAGCAGTGAGGATGGCAGCAAGG
ATACCGCTCGTGGAAAGTGGATAGTCCACACCGGACGAACGTCCTCGAAG
CGTGACCTTCGTAAAGCCAAAGTGGGACGGGCGGCAGTGCCTGCGCCTGC
TTGGGTGCAAGATTTTCATAAGATGAAAGAACAAGAATCGTGGGCAAGCG
TTATATGTCATGATGACTCCGCTGCGCCAGCGTCCGCACAGGCAACCGCT
AAGCCACGAGAGGGACGAACTACAGTATCGGCTGTTCTAGCGGCGGCAGC
GTCAACTCCGCCCCCCTCCCCGGGGCGGGAAGAGTCCACACCGGACGAAC
GTCCTCGAAGCGTGACCTTCGTAAAGCCAAAGTGGGACGGGCGGCAGTGC
CTGCGCCTGCTTGGGTGCAAGATTTTCATAAGATGAAAGAACAAGAATCG
TGGGCAAGCGTTATATGTCATGATGACTCCGCTGCGCCAGCGTCCGCACA
GGCAACCGCTAAGCCACGAGAGGGACGAACTACAGTATCGGCTGTTCTAG
CGGCGGCAGCGTCAACTCCGCCCCCCTCCCCGGGGCGGGAAGGCGACACG
GCCATCGATGATGAATGGGTAGTTAGGAAACTGGCGCAGATTCGCAGGCG
TTCCAGAAGCATCGACTCGGCAATCGGGGATTTTGCAACTTTGTCCCCTG
TCATCAAGCCTGCGACACGGCCATCGATGATGAATGGGTAGTTAGGAAAC
TGGCGCAGATTCGCAGGCGTTCCAGAAGCATCGACTCGGCAATCGGGGAT
TTTGCAACTTTGTCCCCTGTCATCAAGCCT
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