mRNA_S-dermatodea_contig90688.17151.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig90688.17151.1
Unique NamemRNA_S-dermatodea_contig90688.17151.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig90688.17151.1 vs. uniprot
Match: A0A6H5L4Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.790e-12
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    7 IAAQVAQFAGQSEQKVLVFSVTLTAGERNAVHRLAAGAGLAHESKGQDPDRALHVWK 177
            IAAQV +FA QSE + LVF   L+A ERNA H LAAG GL HES+G + +RALH+WK
Sbjct:  757 IAAQVREFA-QSEDRELVFPSGLSARERNAAHSLAAGEGLGHESRGDEGNRALHLWK 812
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig90688.17151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4Q3_9PHAE4.790e-1263.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig90688contigS-dermatodea_contig90688:349..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925384.0152597-CDS-S-dermatodea_contig90688:348..5281622925384.0152597-CDS-S-dermatodea_contig90688:348..528Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90688 349..528 -
1694079896.8840344-CDS-S-dermatodea_contig90688:348..5281694079896.8840344-CDS-S-dermatodea_contig90688:348..528Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90688 349..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig90688.17151.1prot_S-dermatodea_contig90688.17151.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig90688 349..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig90688.17151.1

>prot_S-dermatodea_contig90688.17151.1 ID=prot_S-dermatodea_contig90688.17151.1|Name=mRNA_S-dermatodea_contig90688.17151.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=60bp
LQIAAQVAQFAGQSEQKVLVFSVTLTAGERNAVHRLAAGAGLAHESKGQD
PDRALHVWKV
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mRNA from alignment at S-dermatodea_contig90688:349..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig90688.17151.1 ID=mRNA_S-dermatodea_contig90688.17151.1|Name=mRNA_S-dermatodea_contig90688.17151.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at S-dermatodea_contig90688:349..528- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCAGATTGCCGCCCAAGTCGCGCAGTTCGCCGGCCAGAGCGAACAGAA
AGTGTTGGTCTTCTCCGTCACCCTTACCGCAGGGGAGAGAAACGCGGTTC
ACAGGCTGGCGGCAGGGGCGGGGCTAGCGCACGAGAGCAAGGGACAAGAT
CCCGACCGCGCCCTTCATGTGTGGAAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig90688:349..528-

>mRNA_S-dermatodea_contig90688.17151.1 ID=mRNA_S-dermatodea_contig90688.17151.1|Name=mRNA_S-dermatodea_contig90688.17151.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig90688:349..528- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCAGATTGCCGCCCAAGTCGCGCAGTTCGCCGGCCAGAGCGAACAGAA
AGTGTTGGTCTTCTCCGTCACCCTTACCGCAGGGGAGAGAAACGCGGTTC
ACAGGCTGGCGGCAGGGGCGGGGCTAGCGCACGAGAGCAAGGGACAAGAT
CCCGACCGCGCCCTTCATGTGTGGAAGGTGCTGCAGATTGCCGCCCAAGT
CGCGCAGTTCGCCGGCCAGAGCGAACAGAAAGTGTTGGTCTTCTCCGTCA
CCCTTACCGCAGGGGAGAGAAACGCGGTTCACAGGCTGGCGGCAGGGGCG
GGGCTAGCGCACGAGAGCAAGGGACAAGATCCCGACCGCGCCCTTCATGT
GTGGAAGGTG
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