mRNA_S-dermatodea_contig905.17129.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig905.17129.1
Unique NamemRNA_S-dermatodea_contig905.17129.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A6H5LBY7_9PHAE (Fe/B12 periplasmic-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBY7_9PHAE)

HSP 1 Score: 378 bits (971), Expect = 5.900e-126
Identity = 187/261 (71.65%), Postives = 214/261 (81.99%), Query Frame = 2
Query:    2 ALCDVCAPAFPMVLSTCARILGDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSD---------------AAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVGDAIGQEIAPRDSWTIISEPQPTE 739
            ALCDVCAP+FPMVLSTCAR+LGDNPRIVSIEPGSVAEVIDSVRLVGRETGF +EG AEARRLE GF+KIR+VVA++E+  A                     A G   +   K++KVAFLEWLEPLFNGGHW+PD+VRAAG EYTMAEPGNKS+G++ +EL  YDADI+LVAPCGMD+ RA SDGE+MWRH WWR+LRAVKDG+VY LDGNAYYARPGPRLLQG G+IARLLHGDA GDAIG++IAPRDSW II+ P P +
Sbjct:  102 ALCDVCAPSFPMVLSTCARVLGDNPRIVSIEPGSVAEVIDSVRLVGRETGFAEEGIAEARRLEAGFDKIRSVVAKLESTLATAXXXXXXXXXXXXXXGVVGVAPGGASSVP-KKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPCGMDRNRAKSDGEQMWRHDWWRELRAVKDGKVYALDGNAYYARPGPRLLQGCGIIARLLHGDAAGDAIGEDIAPRDSWFIITAPAPAQ 361          
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A835YMX1_9STRA (Periplasmic binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX1_9STRA)

HSP 1 Score: 253 bits (645), Expect = 2.250e-77
Identity = 122/242 (50.41%), Postives = 163/242 (67.36%), Query Frame = 2
Query:    2 ALCDVCAPAFPMVLSTCARILGDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVGDAIGQEIAPRDSWTIISEP 727
            ALCDVCA ++P+V+  CAR+LGD+PR++SIEP  +++VI SVR VGRE G  +E +  AR LE GF KI+A V  +                   S   +    L   +PLFNGGHW+PD++  AGA+Y +A+   +S+ +TPE L A D DI+LVAPCG D  RA  D + +W+H WW +LRAV+DG+VY +DGNAYYARPGPRLLQG G+IARL+HG +VG  +G+E+APR  W  +  P
Sbjct:   98 ALCDVCAVSYPIVVGVCARVLGDHPRVISIEPTCLSDVIASVRTVGRECGAEEEADEVARGLEAGFEKIKAAVKGLP-------------RPKPSSCNVRDSCNLLLADPLFNGGHWVPDLLDIAGADYRLAKTKERSIQITPETLAASDPDIILVAPCGFDSTRAHDDAQHLWQHDWWTQLRAVRDGKVYAMDGNAYYARPGPRLLQGCGIIARLIHGKSVGQTLGEELAPRH-WKQVQAP 325          
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A7S4KA17_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KA17_9STRA)

HSP 1 Score: 192 bits (487), Expect = 2.790e-51
Identity = 99/252 (39.29%), Postives = 146/252 (57.94%), Query Frame = 2
Query:    5 LCDVCAPAFPMVLSTCARILGD---------------NPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTM-AEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWR-HAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVGDAIGQEIAPRDSW 709
            LCDVCA ++P+V+  CA++LG                NP+++S+EP ++ E + +  +     G  D     ARR EE  + IRA +  +         +AA+G        R +VAFLEW +P+F GGHWIPDM+  AGAEY    + G +SVG+  E    +D D +L+ PCG   ER   D  ++ R   WW+++ AV++G VY LDGN+YYARPGPRLLQGTG++A  +HG+     +G+E+ P + +
Sbjct:  129 LCDVCAVSYPVVIDACAKLLGGGEXXXXXXXXDGERLNPKVISMEPTTLKETLRTFHVAAEAVGLTDA----ARRAEEITSHIRAGLETIR--------NAADGR------PRPRVAFLEWHDPIFAGGHWIPDMLDMAGAEYVFPVKSGERSVGVADEHFVEFDPDFILIGPCGFGLERTVKDTLQLARTKPWWKEMSAVREGNVYALDGNSYYARPGPRLLQGTGIMAACIHGEETAKELGEELCPTEGY 362          
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A7R9WK88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WK88_9STRA)

HSP 1 Score: 174 bits (442), Expect = 6.470e-48
Identity = 96/226 (42.48%), Postives = 137/226 (60.62%), Query Frame = 2
Query:    5 LCDVCAPAFPMVLSTCARIL-------GDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSY-KRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHA----WWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIAR 646
            LCD+CA + P+V +TCARI         D  +IVS+EP S+ +V +++R+ GR  G     EA+A  +  G+ K    V  +            EG    +++ K+ KVAFLEW EP   GGHWI DM+  AG  YT+ + G +S  +T E+L  Y+ D++L+ PCG   ERAT+D   +  H+     W+ LRAV+D +V+ LDGN+YYARPGPRL+QGTGL+A+
Sbjct:   82 LCDICAVSAPLVNNTCARIFPTKQEDGSDKTKIVSLEPQSLNDVWETIRVAGRVLGV----EAKAEEMIGGYVKDLQEVQTI-----------VEGYLKTNAHIKKPKVAFLEWHEPFVTGGHWIADMMEIAGGRYTLNKTGCRSECITDEQLVQYNPDVILIGPCGFSVERATNDTLPLLNHSKRGPLWKNLRAVQDEKVFALDGNSYYARPGPRLVQGTGLMAK 292          
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A7S2T5Q4_9CHLO (Hypothetical protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A7S2T5Q4_9CHLO)

HSP 1 Score: 171 bits (432), Expect = 5.900e-46
Identity = 92/231 (39.83%), Postives = 131/231 (56.71%), Query Frame = 2
Query:    5 LCDVCAPAFPMVLSTCARILGDNP-RIVSIEPGSVAEVIDSVRLVGRET----GFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMW------RHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDA 664
            LCDVCA  F  V S C+R+L D+P +++S+EP ++ +V DS+++VG         IDE  A   R +EG   +R  V     R                  +R KVA LEW +PLF GGHWI +MV  AG  Y +  PG +S  +T  +L AYD D++++APCG D +R   D +K+          WW  LRAV++ +VY  DGN Y++RP PRL++G  ++A +LHG A
Sbjct:  107 LCDVCAVNFEQVKSKCSRLLADDPYKLLSVEPQTLRDVRDSIQVVGASLDCSRAAIDEALA---RFDEGRASVRERVHRRLDR------------------RRPKVALLEWFDPLFTGGHWIHEMVEDAGGSYGLTRPGERSAVMTRSDLAAYDPDVIVLAPCGFDLDRCERDAKKILYDPEGEHFEWWSGLRAVRESEVYACDGNQYFSRPSPRLVEGIEILAEVLHGVA 316          
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A7S4V8M0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V8M0_9STRA)

HSP 1 Score: 170 bits (431), Expect = 6.090e-44
Identity = 90/276 (32.61%), Postives = 142/276 (51.45%), Query Frame = 2
Query:    5 LCDVCAPAFPMVLSTCARILGD--------------------------------NPRIVSIEPGSVAEVIDSVRLVGRETG---FIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTM-AEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMW-RHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVGDAIGQEIAPRDSWTIIS 721
            LCDVCA ++P+VLSTCA++LG                                 +P+++S+EP ++ + +D+  +  +  G    I         +E G N+IR  V                        K+ +VAF+EW +P+F GGHWI DM+  A  +Y M  E   +S+ ++ E+    D D++L+ PCG D  R   D  +++    WW  LRAVK+G+V+  D N+YYARPGPRLLQGTG++A  +HGD + D++ +++ P   +  I+
Sbjct:   85 LCDVCAVSYPVVLSTCAKLLGGPKANVEESDEKGVVEKGSSSCHLSLKDTTTGLDPKVISMEPENLKDTLDTFHVAAKAIGSPEVIKRANEVTSSIESGLNRIRQAV---------------------KGCKKPRVAFIEWHDPIFCGGHWIVDMLDIARGDYVMPVEYAGRSIAMSNEDFIKLDPDVILIGPCGFDLARTVKDTIEIFGTKDWWLNLRAVKEGRVFAADANSYYARPGPRLLQGTGIMAAAMHGDNIMDSLDEDLVPASGYCQIT 339          
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: UPI001C5D4500 (cobalamin-binding protein n=1 Tax=Nonomuraea guangzhouensis TaxID=1291555 RepID=UPI001C5D4500)

HSP 1 Score: 152 bits (383), Expect = 3.670e-39
Identity = 78/222 (35.14%), Postives = 123/222 (55.41%), Query Frame = 2
Query:    5 LCDVCAPAFPMVLSTCARILGDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVG 670
            LC+VCA ++  V S   R+L   PR++S+EP ++ EV+ S+  +G   G  D        LE+    +R++VA+                       R +VA +EWL+PL+  GHW+P+ +RAAG E  +AE G  +  +  E + A   +++L+ PCG   ER   +   + R+  W  L AV+ GQV+ LDG AY+ RPGPR+++G  ++A++LHG  VG
Sbjct:   93 LCEVCAVSYTGV-SRAVRLLDSGPRVISLEPRTLPEVLRSIEHLGEALGAADAASRRVAELEDRLAAVRSMVADR---------------------PRPRVAAIEWLDPLWPAGHWVPEQIRAAGGEPLLAEAGEHTTAIDWETVRASQPEVILLMPCGFPPERTQEEWRLLTRYPGWADLPAVRAGQVWVLDGPAYFNRPGPRVVRGVEVLAQVLHGVHVG 292          
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A7C2DJX0_9FIRM (Cobalamin-binding protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2DJX0_9FIRM)

HSP 1 Score: 152 bits (384), Expect = 3.790e-39
Identity = 82/220 (37.27%), Postives = 127/220 (57.73%), Query Frame = 2
Query:    5 LCDVCAPAFPMVLSTCARILGDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDA 664
            LC VCAP++ +V    ARIL    R+VS+EP ++AEV++++RLVG  TG     EA A  L  G   +RA VA                        R +VA LEWL+PL+  GHW+P+MV AAG E  +  PG  +  ++ + + A   +++++ PCG D  R   +   + R A W ++ AV+ G+VY ++G+A++ RPGPR+++G  ++A LLH +A
Sbjct:   94 LCRVCAPSYTLVREA-ARILEGEVRLVSLEPRTLAEVLETIRLVGELTGRQGRAEALAAGLRAGLETVRAQVA---------------------GRPRPRVACLEWLDPLYAAGHWVPEMVAAAGGEDVLGRPGEHARVVSWDAVRAAAPEVLVLMPCGFDVPRTRRETALVARRAGWGEVPAVRAGRVYAVNGSAFFNRPGPRIVRGVEILAGLLHPEA 291          
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: UPI00145D33BE (cobalamin-binding protein n=1 Tax=Streptomyces sp. HNM0575 TaxID=2716338 RepID=UPI00145D33BE)

HSP 1 Score: 151 bits (381), Expect = 7.520e-39
Identity = 80/225 (35.56%), Postives = 126/225 (56.00%), Query Frame = 2
Query:    5 LCDVCAPAFPMVLSTCARILGDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVGDAI 679
            LC+VCA ++  V+    R L   P ++S+EP ++++V+D V  VG E G    G   A  L +   ++R  VA +                      R KVA +EWL+PL+  GHW+P+ +RAAG E  +AEPG  +  +  E + A   +++L+ PCG+  ER  S+ E + R   W +L AV+ G+V+ +DG AY+ RPGPR+++G  ++A +LHG   GD +
Sbjct:   93 LCEVCAVSYGSVVGA-VRSLESGPTMLSLEPRTLSDVLDCVERVGGELGVPLVGSRRAAELRDRLERVRKSVAGL---------------------ARPKVAAIEWLDPLWPAGHWVPEQIRAAGGEALLAEPGEHTEPVDWETVRAAQPEVMLLMPCGLAPERTESERELLTRLPGWAELPAVRAGRVWVVDGPAYFNRPGPRVVRGAEVLAHVLHGVTAGDEV 295          
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A812QZJ7_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QZJ7_SYMMI)

HSP 1 Score: 147 bits (371), Expect = 1.510e-38
Identity = 71/159 (44.65%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  302 KVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVG-----DAIGQEIAPRDSWTIISEPQPTEAPGIVAPP 763
            +   LEW +PLF+GGHWIP+M+ AAG+E     PGNKS  + P  LT YD D +LVA CG D  R   D +K+W   WW  LR VK+G+V+  DGN Y+ARPGP L+ G  ++AR++H D  G     +A G   A   +W  + EP    A G+   P
Sbjct:   30 RCVLLEWADPLFDGGHWIPEMLVAAGSEEGWQSPGNKSKKIEPSVLTDYDPDCILVACCGFDLHRNLEDAQKLWSKPWWTSLRCVKEGKVFAADGNRYFARPGPSLVAGVAIMARIIHDDVPGVVSAVEATGLLPAEGVAWGRV-EPPGLPASGVPGQP 187          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBY7_9PHAE5.900e-12671.65Fe/B12 periplasmic-binding domain-containing prote... [more]
A0A835YMX1_9STRA2.250e-7750.41Periplasmic binding protein n=1 Tax=Tribonema minu... [more]
A0A7S4KA17_9STRA2.790e-5139.29Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9WK88_9STRA6.470e-4842.48Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2T5Q4_9CHLO5.900e-4639.83Hypothetical protein n=2 Tax=Chloropicon primus Ta... [more]
A0A7S4V8M0_9STRA6.090e-4432.61Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
UPI001C5D45003.670e-3935.14cobalamin-binding protein n=1 Tax=Nonomuraea guang... [more]
A0A7C2DJX0_9FIRM3.790e-3937.27Cobalamin-binding protein n=1 Tax=Firmicutes bacte... [more]
UPI00145D33BE7.520e-3935.56cobalamin-binding protein n=1 Tax=Streptomyces sp.... [more]
A0A812QZJ7_SYMMI1.510e-3844.65Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig905contigS-dermatodea_contig905:302..3399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.5
Seed ortholog evalue1.9e-98
Seed eggNOG ortholog2880.D8LBW6
Preferred nameC1orf53
EggNOG OGs2CTC6@1,2S4BH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionABC transporter periplasmic binding domain
Ec32 orthologEc-20_003540.1
Exons4
Model size1262
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig905.17129.1prot_S-dermatodea_contig905.17129.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig905 336..2906 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925382.2125351-UTR-S-dermatodea_contig905:301..3351622925382.2125351-UTR-S-dermatodea_contig905:301..335Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig905 302..335 +
1694079895.6646278-UTR-S-dermatodea_contig905:301..3351694079895.6646278-UTR-S-dermatodea_contig905:301..335Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig905 302..335 +
1622925382.281773-UTR-S-dermatodea_contig905:2906..33991622925382.281773-UTR-S-dermatodea_contig905:2906..3399Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig905 2907..3399 +
1694079895.747048-UTR-S-dermatodea_contig905:2906..33991694079895.747048-UTR-S-dermatodea_contig905:2906..3399Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig905 2907..3399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925382.2267416-CDS-S-dermatodea_contig905:335..4011622925382.2267416-CDS-S-dermatodea_contig905:335..401Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig905 336..401 +
1694079895.6804223-CDS-S-dermatodea_contig905:335..4011694079895.6804223-CDS-S-dermatodea_contig905:335..401Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig905 336..401 +
1622925382.238932-CDS-S-dermatodea_contig905:964..12681622925382.238932-CDS-S-dermatodea_contig905:964..1268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig905 965..1268 +
1694079895.6934693-CDS-S-dermatodea_contig905:964..12681694079895.6934693-CDS-S-dermatodea_contig905:964..1268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig905 965..1268 +
1622925382.260483-CDS-S-dermatodea_contig905:2175..23391622925382.260483-CDS-S-dermatodea_contig905:2175..2339Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig905 2176..2339 +
1694079895.7232246-CDS-S-dermatodea_contig905:2175..23391694079895.7232246-CDS-S-dermatodea_contig905:2175..2339Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig905 2176..2339 +
1622925382.271118-CDS-S-dermatodea_contig905:2705..29061622925382.271118-CDS-S-dermatodea_contig905:2705..2906Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig905 2706..2906 +
1694079895.7349143-CDS-S-dermatodea_contig905:2705..29061694079895.7349143-CDS-S-dermatodea_contig905:2705..2906Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig905 2706..2906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig905.17129.1

>prot_S-dermatodea_contig905.17129.1 ID=prot_S-dermatodea_contig905.17129.1|Name=mRNA_S-dermatodea_contig905.17129.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=245bp
MVLSTCARILGDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARR
LEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPL
FNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGM
DKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTG
LIARLLHGDAVGDAIGQEIAPRDSWTIISEPQPTEAPGIVAPPS*
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mRNA from alignment at S-dermatodea_contig905:302..3399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig905.17129.1 ID=mRNA_S-dermatodea_contig905.17129.1|Name=mRNA_S-dermatodea_contig905.17129.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3098bp|location=Sequence derived from alignment at S-dermatodea_contig905:302..3399+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGCTGTGCGACGTATGCGCCCCGGCGTTCCCCATGGTCCTCAGCACGT GCGCTCGAATTCTCGGAGACAACCCGAGGATCGTGAGCATCGAGCCTGGG GTGAGACCGCTAGAATATTTTTATAGATTTGACGGAACCAGTGTGGAGTG AGAGATGAGAGATACGCAAGGTTGCCGTTCACTTTCAGCACAATCAATGC ACTTCTTGTGTGGCACAACTGCAAACTCCACAGGTCGAGGTTGATGCCAT GCTGACGGCTGGGACTGGCGGGGTGTGAAACACCGTGCCTCGTTCGAGTA TTATTTATTTTTTTGGGTCGGGCGGCAATTGTGATTCAGTCATCGTTGCA GGCGAATGTACCACTAGACCTTCCCTATGCATACTACTTGTACATGTATT ATAGGACGAAGGTACTGCTACCGCAAAACAAGGTATGACACGACGGTGCC GCCACGCCCGCGTGCAAGTTGGAACCGCCGCCGAATGCAGCTGCAATTGG CAGTCCTGAGACAGAGACGTAGCCGCGCAAGCTGCGGTAAAGGACTGACA TTTCATCATCACGCCGTGGACACAAATGTGCGGCTCCCGTCTGTTCTCGC TCTCCTTTCTCGTCACACCAACGCTCACGCGACCATGGAACGACAAAACC GTTTCTCAACAAGAGCGTCGCGGAGGTGATTGACTCCGTTCGTCTTGTGG GCCGGGAGACCGGTTTTATCGACGAGGGAGAAGCCGAGGCACGACGGCTG GAGGAGGGCTTCAACAAAATCCGGGCGGTCGTTGCGGAGATGGAAGCGCG AAGCGCGGCAGAGCAGTCGGACGCGGCGGAGGGGTCCAAGGACGCCCACA GCTACAAGAGGAAGAAGGTCGCGTTCTTGGAGTGGTTGGAACCGCTGTTC AACGGCGGGCACTGGATTCCTGACATGGTGCGGGCTGCCGGCGCGGAGTA CACGATGGCAGAGCCTGGTGAGAAAGAAAGGGCCGAGGTCGACTATTTAT TTTGTCGTGGCTGATTTGTCACTGGTGCCGACGGTTAGCTGTTTCGCAAG TTTCTATGTACGGTAGAACAACCCATAAGGCGAGGGGGGGGGGTCAGCAC AGTTAGAAGACAATGGCCATGACTTCTCGCTGGCTGTGGTAGTCTTGCCT CTTGCGGGACTATGGTGAAGAAGACAACTAGCAGAAAGGGGGGAAAAGGA CACCACTAAGGTCACGAGGCGTCGGAGGGCGGAGGGGTAGCCTCGTTGTT CGCTTCCATCGCCGCGCAAAGGGACGACTTGCCTGAGTAAAGGTAACGAA GGTAACGTTGGTTGCCTCCGACTTGCATGTACTCCATCCACGTAATCTGG GTGGTTGTGCGCAGACCCATCGACACCATATTATATCACGTTTTCTTATT CGCTAAAATTGCACACCGCTAATAGAAAAAACGCATTCTAAAGATCAGGT CGAGTTCGAGGCAAGCCACTGCCAGATTCTCTCATCTGCTCTATGTACAC TTTAGTATGTACCAGTATTTGGTTACGAGCGCTCGGGTATCTCCTTCTCC TGTGTTTCGTGGGAAGCAATCTTGTCCTAGACGCGAATATACAGTTTATG TGCATACTTTCTTCATCGCCCTTCTTTTCGCTATTACCAACTCCAATTAT TAACTCCACAAAGCCCCCCTCACCTTGGATCAATTCGCTCAAATGCTCCG CCTTGTTTTTTAAGTCAGACGCCATCATCTCCTCCGTCTCAAAAGCATTG CCCATCTCTCATCAGTCGAACCAAAGACTATCCGATACGACGAAAATGAT GCTCTTCTTTCGATCGAACAATTGAAGCGACAACAAAATTCTTGCCCCTC TTCCACGTGCCTCCAATCCCCAAGGCAACAAGAGTGTGGGCTTGACGCCT GAAGAGCTCACGGCGTATGACGCGGACATTGTCCTGGTTGCTCCTTGCGG GATGGACAAGGAGAGGGCAACTTCCGACGGCGAGAAGATGTGGCGCCATG CCTGGTGGAGGAAGCTTCGGGCGGTGAAGGACGGGCAGGTGCAAAGCAAA ACAAAAGAAAGCAACCATGAACCCTGCTTGCGTGGACAAAAACTCGCGGA AATACCTCACGAGACGTGGAGGGATGGATCCCAACACTGAATTGAGCTGC ACAAACAAAATCCGTGTCTTTTATCAAAAGCGCTATTAATAGCAATGTGT ACCTGCACTGAGCCCTGAATCCTGGTGCCACAAACCACTGCTTCCTCCAT TGACCTTAGGTGTGCCACATACAGCACAAGATGCACTCCCAGTCAGCACA TCATGAGCTAACGTTTGCCAAGAAAAAAGCAGGTTGTGCCGACGAATGAC CACTGGGGTACGCGACTTCCCATGGTATGCGACCCTCTCTCTGTGGAAAT GCAGGTATACGGCTTGGATGGAAACGCCTATTATGCGAGGCCGGGGCCGC GTCTCCTCCAAGGGACTGGGCTCATCGCAAGACTCTTGCACGGGGACGCT GTGGGGGACGCCATTGGCCAAGAAATAGCGCCCCGCGACTCGTGGACGAT AATATCTGAGCCTCAGCCGACGGAGGCTCCCGGGATCGTTGCGCCTCCAT CATGAGCTGTATTCGTGTCTGTAGAGCTATACCCTGGAATTCATGCATCT CGAGGGAAAGGTAGATGGTGCGTACGCGCCTGGACGAGGGTTTGCGGGTC AGAATCTACTACCTGGTACACAGTATTAAGGTGGAAATGCCCCATAGTTG GTTTTGTGTTTGTGTGTTGCGAGGAGTTTCGCCATCTCAGTACCAGTACA TTGCATTGCAGTATCGTGCCACTCCCCCATGCATGGCGCATGCCCAGAGG GAACGAATAGACGCAGGCTTGCTTTCCTGTACTTTGCATGTTAGGCTTTG GAAACGAGACGCTGGCGGGCCGGGTCCTCTGTCCTACTTGGTACGCTCAA GGACTTCGAACGGTGGTAAAACGCCGACTGGGGACATTTGATAAAATCAG GTGCCTCGAACCGATCCCACTAACTCAGCTTTGGCGCCACGTCTTATTTA ACTCATGGACAAGATACAGAGTGCCAACGCCTCCTGTCTACTGCCCTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig905:302..3399+

>mRNA_S-dermatodea_contig905.17129.1 ID=mRNA_S-dermatodea_contig905.17129.1|Name=mRNA_S-dermatodea_contig905.17129.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at S-dermatodea_contig905:302..3399+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCCTCAGCACGTGCGCTCGAATTCTCGGAGACAACCCGAGGATCGT
GAGCATCGAGCCTGGGATGGTCCTCAGCACGTGCGCTCGAATTCTCGGAG
ACAACCCGAGGATCGTGAGCATCGAGCCTGGGAGCGTCGCGGAGGTGATT
GACTCCGTTCGTCTTGTGGGCCGGGAGACCGGTTTTATCGACGAGGGAGA
AGCCGAGGCACGACGGCTGGAGGAGGGCTTCAACAAAATCCGGGCGGTCG
TTGCGGAGATGGAAGCGCGAAGCGCGGCAGAGCAGTCGGACGCGGCGGAG
GGGTCCAAGGACGCCCACAGCTACAAGAGGAAGAAGGTCGCGTTCTTGGA
GTGGTTGGAACCGCTGTTCAACGGCGGGCACTGGATTCCTGACATGGTGC
GGGCTGCCGGCGCGGAGTACACGATGGCAGAGCCTGAGCGTCGCGGAGGT
GATTGACTCCGTTCGTCTTGTGGGCCGGGAGACCGGTTTTATCGACGAGG
GAGAAGCCGAGGCACGACGGCTGGAGGAGGGCTTCAACAAAATCCGGGCG
GTCGTTGCGGAGATGGAAGCGCGAAGCGCGGCAGAGCAGTCGGACGCGGC
GGAGGGGTCCAAGGACGCCCACAGCTACAAGAGGAAGAAGGTCGCGTTCT
TGGAGTGGTTGGAACCGCTGTTCAACGGCGGGCACTGGATTCCTGACATG
GTGCGGGCTGCCGGCGCGGAGTACACGATGGCAGAGCCTGGCAACAAGAG
TGTGGGCTTGACGCCTGAAGAGCTCACGGCGTATGACGCGGACATTGTCC
TGGTTGCTCCTTGCGGGATGGACAAGGAGAGGGCAACTTCCGACGGCGAG
AAGATGTGGCGCCATGCCTGGTGGAGGAAGCTTCGGGCGGTGAAGGACGG
GCAGGCAACAAGAGTGTGGGCTTGACGCCTGAAGAGCTCACGGCGTATGA
CGCGGACATTGTCCTGGTTGCTCCTTGCGGGATGGACAAGGAGAGGGCAA
CTTCCGACGGCGAGAAGATGTGGCGCCATGCCTGGTGGAGGAAGCTTCGG
GCGGTGAAGGACGGGCAGGTATACGGCTTGGATGGAAACGCCTATTATGC
GAGGCCGGGGCCGCGTCTCCTCCAAGGGACTGGGCTCATCGCAAGACTCT
TGCACGGGGACGCTGTGGGGGACGCCATTGGCCAAGAAATAGCGCCCCGC
GACTCGTGGACGATAATATCTGAGCCTCAGCCGACGGAGGCTCCCGGGAT
CGTTGCGCCTCCATCATGAGTATACGGCTTGGATGGAAACGCCTATTATG
CGAGGCCGGGGCCGCGTCTCCTCCAAGGGACTGGGCTCATCGCAAGACTC
TTGCACGGGGACGCTGTGGGGGACGCCATTGGCCAAGAAATAGCGCCCCG
CGACTCGTGGACGATAATATCTGAGCCTCAGCCGACGGAGGCTCCCGGGA
TCGTTGCGCCTCCATCATGA
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