mRNA_S-dermatodea_contig905.17129.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A6H5LBY7_9PHAE (Fe/B12 periplasmic-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBY7_9PHAE) HSP 1 Score: 378 bits (971), Expect = 5.900e-126 Identity = 187/261 (71.65%), Postives = 214/261 (81.99%), Query Frame = 2
Query: 2 ALCDVCAPAFPMVLSTCARILGDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSD---------------AAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVGDAIGQEIAPRDSWTIISEPQPTE 739
ALCDVCAP+FPMVLSTCAR+LGDNPRIVSIEPGSVAEVIDSVRLVGRETGF +EG AEARRLE GF+KIR+VVA++E+ A A G + K++KVAFLEWLEPLFNGGHW+PD+VRAAG EYTMAEPGNKS+G++ +EL YDADI+LVAPCGMD+ RA SDGE+MWRH WWR+LRAVKDG+VY LDGNAYYARPGPRLLQG G+IARLLHGDA GDAIG++IAPRDSW II+ P P +
Sbjct: 102 ALCDVCAPSFPMVLSTCARVLGDNPRIVSIEPGSVAEVIDSVRLVGRETGFAEEGIAEARRLEAGFDKIRSVVAKLESTLATAXXXXXXXXXXXXXXGVVGVAPGGASSVP-KKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPCGMDRNRAKSDGEQMWRHDWWRELRAVKDGKVYALDGNAYYARPGPRLLQGCGIIARLLHGDAAGDAIGEDIAPRDSWFIITAPAPAQ 361
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A835YMX1_9STRA (Periplasmic binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX1_9STRA) HSP 1 Score: 253 bits (645), Expect = 2.250e-77 Identity = 122/242 (50.41%), Postives = 163/242 (67.36%), Query Frame = 2
Query: 2 ALCDVCAPAFPMVLSTCARILGDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVGDAIGQEIAPRDSWTIISEP 727
ALCDVCA ++P+V+ CAR+LGD+PR++SIEP +++VI SVR VGRE G +E + AR LE GF KI+A V + S + L +PLFNGGHW+PD++ AGA+Y +A+ +S+ +TPE L A D DI+LVAPCG D RA D + +W+H WW +LRAV+DG+VY +DGNAYYARPGPRLLQG G+IARL+HG +VG +G+E+APR W + P
Sbjct: 98 ALCDVCAVSYPIVVGVCARVLGDHPRVISIEPTCLSDVIASVRTVGRECGAEEEADEVARGLEAGFEKIKAAVKGLP-------------RPKPSSCNVRDSCNLLLADPLFNGGHWVPDLLDIAGADYRLAKTKERSIQITPETLAASDPDIILVAPCGFDSTRAHDDAQHLWQHDWWTQLRAVRDGKVYAMDGNAYYARPGPRLLQGCGIIARLIHGKSVGQTLGEELAPRH-WKQVQAP 325
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A7S4KA17_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KA17_9STRA) HSP 1 Score: 192 bits (487), Expect = 2.790e-51 Identity = 99/252 (39.29%), Postives = 146/252 (57.94%), Query Frame = 2
Query: 5 LCDVCAPAFPMVLSTCARILGD---------------NPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTM-AEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWR-HAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVGDAIGQEIAPRDSW 709
LCDVCA ++P+V+ CA++LG NP+++S+EP ++ E + + + G D ARR EE + IRA + + +AA+G R +VAFLEW +P+F GGHWIPDM+ AGAEY + G +SVG+ E +D D +L+ PCG ER D ++ R WW+++ AV++G VY LDGN+YYARPGPRLLQGTG++A +HG+ +G+E+ P + +
Sbjct: 129 LCDVCAVSYPVVIDACAKLLGGGEXXXXXXXXDGERLNPKVISMEPTTLKETLRTFHVAAEAVGLTDA----ARRAEEITSHIRAGLETIR--------NAADGR------PRPRVAFLEWHDPIFAGGHWIPDMLDMAGAEYVFPVKSGERSVGVADEHFVEFDPDFILIGPCGFGLERTVKDTLQLARTKPWWKEMSAVREGNVYALDGNSYYARPGPRLLQGTGIMAACIHGEETAKELGEELCPTEGY 362
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A7R9WK88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WK88_9STRA) HSP 1 Score: 174 bits (442), Expect = 6.470e-48 Identity = 96/226 (42.48%), Postives = 137/226 (60.62%), Query Frame = 2
Query: 5 LCDVCAPAFPMVLSTCARIL-------GDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSY-KRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHA----WWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIAR 646
LCD+CA + P+V +TCARI D +IVS+EP S+ +V +++R+ GR G EA+A + G+ K V + EG +++ K+ KVAFLEW EP GGHWI DM+ AG YT+ + G +S +T E+L Y+ D++L+ PCG ERAT+D + H+ W+ LRAV+D +V+ LDGN+YYARPGPRL+QGTGL+A+
Sbjct: 82 LCDICAVSAPLVNNTCARIFPTKQEDGSDKTKIVSLEPQSLNDVWETIRVAGRVLGV----EAKAEEMIGGYVKDLQEVQTI-----------VEGYLKTNAHIKKPKVAFLEWHEPFVTGGHWIADMMEIAGGRYTLNKTGCRSECITDEQLVQYNPDVILIGPCGFSVERATNDTLPLLNHSKRGPLWKNLRAVQDEKVFALDGNSYYARPGPRLVQGTGLMAK 292
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A7S2T5Q4_9CHLO (Hypothetical protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A7S2T5Q4_9CHLO) HSP 1 Score: 171 bits (432), Expect = 5.900e-46 Identity = 92/231 (39.83%), Postives = 131/231 (56.71%), Query Frame = 2
Query: 5 LCDVCAPAFPMVLSTCARILGDNP-RIVSIEPGSVAEVIDSVRLVGRET----GFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMW------RHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDA 664
LCDVCA F V S C+R+L D+P +++S+EP ++ +V DS+++VG IDE A R +EG +R V R +R KVA LEW +PLF GGHWI +MV AG Y + PG +S +T +L AYD D++++APCG D +R D +K+ WW LRAV++ +VY DGN Y++RP PRL++G ++A +LHG A
Sbjct: 107 LCDVCAVNFEQVKSKCSRLLADDPYKLLSVEPQTLRDVRDSIQVVGASLDCSRAAIDEALA---RFDEGRASVRERVHRRLDR------------------RRPKVALLEWFDPLFTGGHWIHEMVEDAGGSYGLTRPGERSAVMTRSDLAAYDPDVIVLAPCGFDLDRCERDAKKILYDPEGEHFEWWSGLRAVRESEVYACDGNQYFSRPSPRLVEGIEILAEVLHGVA 316
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A7S4V8M0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V8M0_9STRA) HSP 1 Score: 170 bits (431), Expect = 6.090e-44 Identity = 90/276 (32.61%), Postives = 142/276 (51.45%), Query Frame = 2
Query: 5 LCDVCAPAFPMVLSTCARILGD--------------------------------NPRIVSIEPGSVAEVIDSVRLVGRETG---FIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTM-AEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMW-RHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVGDAIGQEIAPRDSWTIIS 721
LCDVCA ++P+VLSTCA++LG +P+++S+EP ++ + +D+ + + G I +E G N+IR V K+ +VAF+EW +P+F GGHWI DM+ A +Y M E +S+ ++ E+ D D++L+ PCG D R D +++ WW LRAVK+G+V+ D N+YYARPGPRLLQGTG++A +HGD + D++ +++ P + I+
Sbjct: 85 LCDVCAVSYPVVLSTCAKLLGGPKANVEESDEKGVVEKGSSSCHLSLKDTTTGLDPKVISMEPENLKDTLDTFHVAAKAIGSPEVIKRANEVTSSIESGLNRIRQAV---------------------KGCKKPRVAFIEWHDPIFCGGHWIVDMLDIARGDYVMPVEYAGRSIAMSNEDFIKLDPDVILIGPCGFDLARTVKDTIEIFGTKDWWLNLRAVKEGRVFAADANSYYARPGPRLLQGTGIMAAAMHGDNIMDSLDEDLVPASGYCQIT 339
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: UPI001C5D4500 (cobalamin-binding protein n=1 Tax=Nonomuraea guangzhouensis TaxID=1291555 RepID=UPI001C5D4500) HSP 1 Score: 152 bits (383), Expect = 3.670e-39 Identity = 78/222 (35.14%), Postives = 123/222 (55.41%), Query Frame = 2
Query: 5 LCDVCAPAFPMVLSTCARILGDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVG 670
LC+VCA ++ V S R+L PR++S+EP ++ EV+ S+ +G G D LE+ +R++VA+ R +VA +EWL+PL+ GHW+P+ +RAAG E +AE G + + E + A +++L+ PCG ER + + R+ W L AV+ GQV+ LDG AY+ RPGPR+++G ++A++LHG VG
Sbjct: 93 LCEVCAVSYTGV-SRAVRLLDSGPRVISLEPRTLPEVLRSIEHLGEALGAADAASRRVAELEDRLAAVRSMVADR---------------------PRPRVAAIEWLDPLWPAGHWVPEQIRAAGGEPLLAEAGEHTTAIDWETVRASQPEVILLMPCGFPPERTQEEWRLLTRYPGWADLPAVRAGQVWVLDGPAYFNRPGPRVVRGVEVLAQVLHGVHVG 292
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A7C2DJX0_9FIRM (Cobalamin-binding protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2DJX0_9FIRM) HSP 1 Score: 152 bits (384), Expect = 3.790e-39 Identity = 82/220 (37.27%), Postives = 127/220 (57.73%), Query Frame = 2
Query: 5 LCDVCAPAFPMVLSTCARILGDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDA 664
LC VCAP++ +V ARIL R+VS+EP ++AEV++++RLVG TG EA A L G +RA VA R +VA LEWL+PL+ GHW+P+MV AAG E + PG + ++ + + A +++++ PCG D R + + R A W ++ AV+ G+VY ++G+A++ RPGPR+++G ++A LLH +A
Sbjct: 94 LCRVCAPSYTLVREA-ARILEGEVRLVSLEPRTLAEVLETIRLVGELTGRQGRAEALAAGLRAGLETVRAQVA---------------------GRPRPRVACLEWLDPLYAAGHWVPEMVAAAGGEDVLGRPGEHARVVSWDAVRAAAPEVLVLMPCGFDVPRTRRETALVARRAGWGEVPAVRAGRVYAVNGSAFFNRPGPRIVRGVEILAGLLHPEA 291
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: UPI00145D33BE (cobalamin-binding protein n=1 Tax=Streptomyces sp. HNM0575 TaxID=2716338 RepID=UPI00145D33BE) HSP 1 Score: 151 bits (381), Expect = 7.520e-39 Identity = 80/225 (35.56%), Postives = 126/225 (56.00%), Query Frame = 2
Query: 5 LCDVCAPAFPMVLSTCARILGDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRLEEGFNKIRAVVAEMEARSAAEQSDAAEGSKDAHSYKRKKVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVGDAI 679
LC+VCA ++ V+ R L P ++S+EP ++++V+D V VG E G G A L + ++R VA + R KVA +EWL+PL+ GHW+P+ +RAAG E +AEPG + + E + A +++L+ PCG+ ER S+ E + R W +L AV+ G+V+ +DG AY+ RPGPR+++G ++A +LHG GD +
Sbjct: 93 LCEVCAVSYGSVVGA-VRSLESGPTMLSLEPRTLSDVLDCVERVGGELGVPLVGSRRAAELRDRLERVRKSVAGL---------------------ARPKVAAIEWLDPLWPAGHWVPEQIRAAGGEALLAEPGEHTEPVDWETVRAAQPEVMLLMPCGLAPERTESERELLTRLPGWAELPAVRAGRVWVVDGPAYFNRPGPRVVRGAEVLAHVLHGVTAGDEV 295
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Match: A0A812QZJ7_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QZJ7_SYMMI) HSP 1 Score: 147 bits (371), Expect = 1.510e-38 Identity = 71/159 (44.65%), Postives = 94/159 (59.12%), Query Frame = 2
Query: 302 KVAFLEWLEPLFNGGHWIPDMVRAAGAEYTMAEPGNKSVGLTPEELTAYDADIVLVAPCGMDKERATSDGEKMWRHAWWRKLRAVKDGQVYGLDGNAYYARPGPRLLQGTGLIARLLHGDAVG-----DAIGQEIAPRDSWTIISEPQPTEAPGIVAPP 763
+ LEW +PLF+GGHWIP+M+ AAG+E PGNKS + P LT YD D +LVA CG D R D +K+W WW LR VK+G+V+ DGN Y+ARPGP L+ G ++AR++H D G +A G A +W + EP A G+ P
Sbjct: 30 RCVLLEWADPLFDGGHWIPEMLVAAGSEEGWQSPGNKSKKIEPSVLTDYDPDCILVACCGFDLHRNLEDAQKLWSKPWWTSLRCVKEGKVFAADGNRYFARPGPSLVAGVAIMARIIHDDVPGVVSAVEATGLLPAEGVAWGRV-EPPGLPASGVPGQP 187 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig905.17129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig905.17129.1 >prot_S-dermatodea_contig905.17129.1 ID=prot_S-dermatodea_contig905.17129.1|Name=mRNA_S-dermatodea_contig905.17129.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=245bp MVLSTCARILGDNPRIVSIEPGSVAEVIDSVRLVGRETGFIDEGEAEARRback to top mRNA from alignment at S-dermatodea_contig905:302..3399+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig905.17129.1 ID=mRNA_S-dermatodea_contig905.17129.1|Name=mRNA_S-dermatodea_contig905.17129.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3098bp|location=Sequence derived from alignment at S-dermatodea_contig905:302..3399+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig905:302..3399+ >mRNA_S-dermatodea_contig905.17129.1 ID=mRNA_S-dermatodea_contig905.17129.1|Name=mRNA_S-dermatodea_contig905.17129.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at S-dermatodea_contig905:302..3399+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |