mRNA_S-dermatodea_contig90473.17128.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig90473.17128.1
Unique NamemRNA_S-dermatodea_contig90473.17128.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig90473.17128.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 7.360e-19
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:   13 GEIMQGVSLCNTPEFEEPGLTLGLCTWKLDENGDLVLGYHHTHRSDKHPVCVVGGTVPAIQVGKEWLVARFALRYIKEGRIVSRVANNKRHNGADKRYRKK 315
            G I +G   C  P F E G+T G  TW+LDE+  L+L  H  ++++ HP C +GG VP  +V + W +  +AL+YI   RIVS+V  N RHNGA ++ R K
Sbjct:  497 GPITEGG--CEIPNFSEAGVTKGESTWQLDEHDYLILPVHSGNKTEGHPACTIGGCVPVEKVNESWRLCHWALKYILNRRIVSKVTQNARHNGAGEKSRAK 595
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BLAST of mRNA_S-dermatodea_contig90473.17128.1 vs. uniprot
Match: D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.980e-17
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:   13 GEIMQGVSLCNTPEFEEPGLTLGLCTWKLDENGDLVLGYHHTHRSDKHPVCVVGGTVPAIQVGKEWLVARFALRYIKEGRIVSRVANNKRHNGADKRYRKK 315
            G I +G   C  P F E G+T G  TW+LDE+ +L+L  H +  ++ HP C +GG VP  +V + W +  +AL+YI   RIV R++ ++RHNGA  + R K
Sbjct:  452 GPITEGG--CEIPNFSEAGVTKGKSTWQLDEHDNLILPVHSSIETEGHPRCQLGGCVPVEKVNESWRLCHWALKYILARRIVQRISQSQRHNGAPAKSRAK 550
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BLAST of mRNA_S-dermatodea_contig90473.17128.1 vs. uniprot
Match: A0A6H5K7M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M5_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.170e-15
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:    4 LETGEIMQGVSLCNTPEFEEPGLTLGLCTWKLDENGDLVLGYHHTHRSDKHPVCVVGGTVPAIQVGKEWLVARFALRYIKEGRIVSRVANNKRHNGA-DKRYRKKK 318
             E G I +G   C TP F E G+T G   W+ DE+  L+L  H   R+D HP  V+GG V   +V + W +  + L+YI   RIV ++  N+RHNGA +K Y K++
Sbjct:  280 FEEGPITEGG--CETPNFSEAGVTEGKSKWEHDEHDKLILPVHSGIRTDGHPRYVIGGCVSVEKVNESWRLCHWVLKYILARRIVPKITQNQRHNGAPEKSYAKRR 383
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig90473.17128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L5E5_9PHAE7.360e-1943.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWV7_ECTSI2.980e-1741.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7M5_9PHAE1.170e-1540.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig90473contigS-dermatodea_contig90473:2..420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size419
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig90473.17128.1prot_S-dermatodea_contig90473.17128.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig90473 23..334 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925381.9992352-UTR-S-dermatodea_contig90473:1..221622925381.9992352-UTR-S-dermatodea_contig90473:1..22Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig90473 2..22 +
1694079895.4960895-UTR-S-dermatodea_contig90473:1..221694079895.4960895-UTR-S-dermatodea_contig90473:1..22Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig90473 2..22 +
1622925382.0245488-UTR-S-dermatodea_contig90473:334..4201622925382.0245488-UTR-S-dermatodea_contig90473:334..420Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig90473 335..420 +
1694079895.5144737-UTR-S-dermatodea_contig90473:334..4201694079895.5144737-UTR-S-dermatodea_contig90473:334..420Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig90473 335..420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925382.0128946-CDS-S-dermatodea_contig90473:22..3341622925382.0128946-CDS-S-dermatodea_contig90473:22..334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90473 23..334 +
1694079895.504614-CDS-S-dermatodea_contig90473:22..3341694079895.504614-CDS-S-dermatodea_contig90473:22..334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90473 23..334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig90473.17128.1

>prot_S-dermatodea_contig90473.17128.1 ID=prot_S-dermatodea_contig90473.17128.1|Name=mRNA_S-dermatodea_contig90473.17128.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MQGVSLCNTPEFEEPGLTLGLCTWKLDENGDLVLGYHHTHRSDKHPVCVV
GGTVPAIQVGKEWLVARFALRYIKEGRIVSRVANNKRHNGADKRYRKKKL
TKN*
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mRNA from alignment at S-dermatodea_contig90473:2..420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig90473.17128.1 ID=mRNA_S-dermatodea_contig90473.17128.1|Name=mRNA_S-dermatodea_contig90473.17128.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=419bp|location=Sequence derived from alignment at S-dermatodea_contig90473:2..420+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATCTCGAGACGGGTGAGATTATGCAGGGCGTTTCGCTGTGCAACACTCC
CGAGTTCGAGGAGCCCGGGCTCACTCTCGGTTTGTGCACGTGGAAGCTGG
ACGAAAACGGCGACCTCGTCTTGGGTTACCACCACACTCACAGAAGCGAC
AAGCACCCCGTGTGTGTCGTCGGAGGCACTGTCCCGGCAATCCAGGTGGG
CAAGGAGTGGCTCGTGGCGAGGTTCGCGCTTCGATACATTAAGGAGGGAA
GGATTGTATCGCGTGTCGCAAACAACAAGCGTCACAATGGCGCCGACAAA
CGATATAGAAAGAAGAAGTTGACGAAAAACTGATAGACATCAAGTTTTCG
CATTCGACGAAACACAAGGAACGCGGTTAGGGACGGTTCCTTTGGTGCCC
GTGACTCTCAGAGTGGAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig90473:2..420+

>mRNA_S-dermatodea_contig90473.17128.1 ID=mRNA_S-dermatodea_contig90473.17128.1|Name=mRNA_S-dermatodea_contig90473.17128.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig90473:2..420+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGGCGTTTCGCTGTGCAACACTCCCGAGTTCGAGGAGCCCGGGCT
CACTCTCGGTTTGTGCACGTGGAAGCTGGACGAAAACGGCGACCTCGTCT
TGGGTTACCACCACACTCACAGAAGCGACAAGCACCCCGTGTGTGTCGTC
GGAGGCACTGTCCCGGCAATCCAGGTGGGCAAGGAGTGGCTCGTGGCGAG
GTTCGCGCTTCGATACATTAAGGAGGGAAGGATTGTATCGCGTGTCGCAA
ACAACAAGCGTCACAATGGCGCCGACAAACGATATAGAAAGAAGAAGTTG
ACGAAAAACTGAATGCAGGGCGTTTCGCTGTGCAACACTCCCGAGTTCGA
GGAGCCCGGGCTCACTCTCGGTTTGTGCACGTGGAAGCTGGACGAAAACG
GCGACCTCGTCTTGGGTTACCACCACACTCACAGAAGCGACAAGCACCCC
GTGTGTGTCGTCGGAGGCACTGTCCCGGCAATCCAGGTGGGCAAGGAGTG
GCTCGTGGCGAGGTTCGCGCTTCGATACATTAAGGAGGGAAGGATTGTAT
CGCGTGTCGCAAACAACAAGCGTCACAATGGCGCCGACAAACGATATAGA
AAGAAGAAGTTGACGAAAAACTGA
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