mRNA_S-dermatodea_contig9038.17118.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9038.17118.1
Unique NamemRNA_S-dermatodea_contig9038.17118.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9038.17118.1 vs. uniprot
Match: D7G0T3_ECTSI (Retinoblastoma binding protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T3_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 4.290e-36
Identity = 84/129 (65.12%), Postives = 95/129 (73.64%), Query Frame = 1 
Query:    1 QELEENVDYVEKEDEFDVVIDARDPEGRKRKAEKEXXXXE-AVVSIEAIDTVGAWSTDSEGEDKGKLFYLSTEPGAAAREGWYDLEVQTSKGSSAATKPRGGAPDHKKKEKKGESVKGEDIREEWTSVR 384
            +ELEENV+YVEKEDEFDVV++  DPEG KRKAEKE    E AVVSI+AIDTV AWSTDSEGED+ + FYLSTEPGAAAREGWYDL+VQTSK    ++KP GG  + K               EEWTSVR
Sbjct:  368 EELEENVEYVEKEDEFDVVVEEGDPEGTKRKAEKEKQQEEEAVVSIDAIDTVDAWSTDSEGEDRLQPFYLSTEPGAAAREGWYDLDVQTSK-RGISSKPGGGRWEDK---------------EEWTSVR 480
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BLAST of mRNA_S-dermatodea_contig9038.17118.1 vs. uniprot
Match: A0A6H5KX51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX51_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.780e-35
Identity = 86/129 (66.67%), Postives = 97/129 (75.19%), Query Frame = 1 
Query:    1 QELEENVDYVEKEDEFDVVIDARDPEGRKRKAEKEXXXXE-AVVSIEAIDTVGAWSTDSEGEDKGKLFYLSTEPGAAAREGWYDLEVQTSKGSSAATKPRGGAPDHKKKEKKGESVKGEDIREEWTSVR 384
            +ELEENV+YVEKEDEFDVV++  DPEG KRKAEKE XXX  AVVSI+AIDTV AWSTDSEGED+ + FYLSTEPGAAAREGWYDL+VQTSK    ++KP GG  + K               EEWTSVR
Sbjct:  240 EELEENVEYVEKEDEFDVVVEEGDPEGTKRKAEKEKXXXXXAVVSIDAIDTVDAWSTDSEGEDRLQPFYLSTEPGAAAREGWYDLDVQTSK-RGISSKPGGGRWEDK---------------EEWTSVR 352
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9038.17118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0T3_ECTSI4.290e-3665.12Retinoblastoma binding protein 5 n=1 Tax=Ectocarpu... [more]
A0A6H5KX51_9PHAE2.780e-3566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9038contigS-dermatodea_contig9038:138..1574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue2.5e-32
Seed eggNOG ortholog2880.D7G0T3
Preferred nameRBBP5
KEGG koko:K14961
KEGG Pathwayko04934,map04934
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000785,GO:0000790,GO:0000922,GO:0001067,GO:0002682,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007610,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010228,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015630,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018027,GO:0018193,GO:0018205,GO:0018991,GO:0019098,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032200,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034401,GO:0034641,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0036211,GO:0040029,GO:0042054,GO:0042393,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043627,GO:0043687,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044648,GO:0044665,GO:0044666,GO:0044703,GO:0045595,GO:0045637,GO:0045652,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048188,GO:0048468,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051568,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0060290,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0080182,GO:0090304,GO:0097159,GO:0097549,GO:0140030,GO:0140034,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903706,GO:1904837,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone H3-K4 methylation
EggNOG OGsKOG1273@1,KOG1273@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-23_001600.1
Exons3
Model size597
Cds size597
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9038.17118.1prot_S-dermatodea_contig9038.17118.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9038 138..1574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925381.4646466-CDS-S-dermatodea_contig9038:137..2871622925381.4646466-CDS-S-dermatodea_contig9038:137..287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9038 138..287 +
1694079895.182709-CDS-S-dermatodea_contig9038:137..2871694079895.182709-CDS-S-dermatodea_contig9038:137..287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9038 138..287 +
1622925381.476952-CDS-S-dermatodea_contig9038:768..10561622925381.476952-CDS-S-dermatodea_contig9038:768..1056Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9038 769..1056 +
1694079895.193945-CDS-S-dermatodea_contig9038:768..10561694079895.193945-CDS-S-dermatodea_contig9038:768..1056Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9038 769..1056 +
1622925381.4889169-CDS-S-dermatodea_contig9038:1415..15741622925381.4889169-CDS-S-dermatodea_contig9038:1415..1574Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9038 1416..1574 +
1694079895.2043765-CDS-S-dermatodea_contig9038:1415..15741694079895.2043765-CDS-S-dermatodea_contig9038:1415..1574Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9038 1416..1574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9038.17118.1

>prot_S-dermatodea_contig9038.17118.1 ID=prot_S-dermatodea_contig9038.17118.1|Name=mRNA_S-dermatodea_contig9038.17118.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=199bp
QELEENVDYVEKEDEFDVVIDARDPEGRKRKAEKEQEEEEAVVSIEAIDT
VGAWSTDSEGEDKGKLFYLSTEPGAAAREGWYDLEVQTSKGSSAATKPRG
GAPDHKKKEKKGESVKGEDIREEWTSVRLARVPDEDSGNDGAGGGGSPRP
SPRPRATASRTPSRSGARRRQREGGQGSQQQDRAPEGEGRRPAARLRRQ
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mRNA from alignment at S-dermatodea_contig9038:138..1574+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9038.17118.1 ID=mRNA_S-dermatodea_contig9038.17118.1|Name=mRNA_S-dermatodea_contig9038.17118.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1437bp|location=Sequence derived from alignment at S-dermatodea_contig9038:138..1574+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGCTGGAAGAGAACGTCGATTACGTGGAAAAAGAAGACGAGTTTGA
CGTGGTCATCGACGCCCGAGACCCCGAAGGCCGCAAGCGCAAGGCCGAAA
AAGAGCAGGAGGAGGAAGAGGCTGTTGTGTCCATCGAGGCCATCGACACG
GTCAGTCTCTTTTTTGCCGCCCAACTAATGACTGCATTGGAATATTACAT
TTATTCTAGTGGGTAGCCACGGCTACGCCCGTGTGAGGTGTGCGTTGGCA
GGACGATATGCCGACGGAGCGCGACACGGAGGTCGAACTCGGTCGAGCTA
CTGTGTGTGTCGCTGCTGTGCATGTCGCTGCTGTGTTTTCGCTTTTATAT
TTAAAAAAAAACGCTCAACGCGATCATCAAGTTGTTTGGCATCAGACGGC
ATCCTTATCTAAGATCAATATACACAATCGGTCATTGTTGCATTAATTAG
TAAGATAATAGATGGATGGATCGATTGATTCATTGCTTGATGCATCGCTT
GATCTGATGGATTGTCGTATCCACAGATCGGTTTGTTGGTTGATTCATCG
ATTGGTCAATGTATCCGTTGACTTTCAACCCCTCTCTCAACGACCTCCAC
ACCTCCCCACACCTCCCCCCACCCACAAAAGGTTGGCGCCTGGAGCACCG
ACTCCGAGGGAGAAGACAAAGGGAAGCTCTTCTATCTGTCCACGGAGCCC
GGCGCCGCGGCGAGGGAGGGCTGGTACGACCTCGAGGTGCAAACGTCCAA
GGGCTCGTCTGCCGCGACAAAGCCTCGCGGGGGCGCCCCCGACCACAAGA
AGAAGGAGAAAAAGGGGGAGAGCGTGAAGGGCGAAGATATCAGGGAAGAG
TGGACGAGCGTTAGGCTCGCCCGCGTGCCCGACGAAGATTCAGGAAACGA
CGGCGCTGGGGGCGGTGGTGTGTATGGCGGGAGCGGCCTCGCCCATGGAC
ACGGCGGCGGCGGCGGCGGCCGCGGCGGAGGTAACAGTAACAACGGCCAC
GGCAATGGCGGGGCGACGGCGAAAAGAAAATCGAAAAAGAAGAAACATCA
TCAGTCCTCGTCTTCGATGTCGGTAGCGTCGCCGTTGCGGCCGCCATTAT
CCTCATTGCCCGCCCAAGCCCAGACCCAAGGGCAAGCTCAAACCCACACC
CAAGCGCAAGCCCAAGCCCAAGCTCAACCACAAACCCAAGCCCGACCGCT
AGCTCAAGCCCAGGCCCAAGCGCAACCGCAAGCCCACATCCAAGCGCAAG
CCCAAGCTCAAGCTCAAACCCAAGCCAGAGCCCAAGGCCAAGCCCACGCC
CACGCGCAACTGCAAGCCGAACCCCAAGCCGAAGCGGTGCCCGTCGACGG
CAGCGCGAGGGGGGGCAGGGTTCACAGCAGCAAGACCGAGCTCCAGAAGG
CGAGGGCCGACGCCCAGCCGCGAGGCTTCGGCGGCAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9038:138..1574+

>mRNA_S-dermatodea_contig9038.17118.1 ID=mRNA_S-dermatodea_contig9038.17118.1|Name=mRNA_S-dermatodea_contig9038.17118.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at S-dermatodea_contig9038:138..1574+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGCTGGAAGAGAACGTCGATTACGTGGAAAAAGAAGACGAGTTTGA
CGTGGTCATCGACGCCCGAGACCCCGAAGGCCGCAAGCGCAAGGCCGAAA
AAGAGCAGGAGGAGGAAGAGGCTGTTGTGTCCATCGAGGCCATCGACACG
CAGGAGCTGGAAGAGAACGTCGATTACGTGGAAAAAGAAGACGAGTTTGA
CGTGGTCATCGACGCCCGAGACCCCGAAGGCCGCAAGCGCAAGGCCGAAA
AAGAGCAGGAGGAGGAAGAGGCTGTTGTGTCCATCGAGGCCATCGACACG
GTTGGCGCCTGGAGCACCGACTCCGAGGGAGAAGACAAAGGGAAGCTCTT
CTATCTGTCCACGGAGCCCGGCGCCGCGGCGAGGGAGGGCTGGTACGACC
TCGAGGTGCAAACGTCCAAGGGCTCGTCTGCCGCGACAAAGCCTCGCGGG
GGCGCCCCCGACCACAAGAAGAAGGAGAAAAAGGGGGAGAGCGTGAAGGG
CGAAGATATCAGGGAAGAGTGGACGAGCGTTAGGCTCGCCCGCGTGCCCG
ACGAAGATTCAGGAAACGACGGCGCTGGGGGCGGTGGTGTTGGCGCCTGG
AGCACCGACTCCGAGGGAGAAGACAAAGGGAAGCTCTTCTATCTGTCCAC
GGAGCCCGGCGCCGCGGCGAGGGAGGGCTGGTACGACCTCGAGGTGCAAA
CGTCCAAGGGCTCGTCTGCCGCGACAAAGCCTCGCGGGGGCGCCCCCGAC
CACAAGAAGAAGGAGAAAAAGGGGGAGAGCGTGAAGGGCGAAGATATCAG
GGAAGAGTGGACGAGCGTTAGGCTCGCCCGCGTGCCCGACGAAGATTCAG
GAAACGACGGCGCTGGGGGCGGTGGTAGCCCAAGGCCAAGCCCACGCCCA
CGCGCAACTGCAAGCCGAACCCCAAGCCGAAGCGGTGCCCGTCGACGGCA
GCGCGAGGGGGGGCAGGGTTCACAGCAGCAAGACCGAGCTCCAGAAGGCG
AGGGCCGACGCCCAGCCGCGAGGCTTCGGCGGCAAAGCCCAAGGCCAAGC
CCACGCCCACGCGCAACTGCAAGCCGAACCCCAAGCCGAAGCGGTGCCCG
TCGACGGCAGCGCGAGGGGGGGCAGGGTTCACAGCAGCAAGACCGAGCTC
CAGAAGGCGAGGGCCGACGCCCAGCCGCGAGGCTTCGGCGGCAA
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