mRNA_S-dermatodea_contig9015.17102.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9015.17102.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE) HSP 1 Score: 347 bits (890), Expect = 3.130e-99 Identity = 332/827 (40.15%), Postives = 396/827 (47.88%), Query Frame = 1
Query: 13 RNDVIRSSSSVSTASL-YGQSTPAAIA----------APAVAALQGVVVAVRGARCNRRRLEPLCGLCEGAVRACVCVVTPXXXXXXXXHPPTHPPRLLRWLRWTIYNKKGGPPGGVLGSTGGLKGNPVLMSEAHGSGDSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHLGAAAEALAAELVGIAGLAEMCSPAGVLKCLALSAAAMAAEAAAGKSCG------EGDDIGSSXXXXXXXXXXXXXXXXVDGFREAE---------RKREDASFTAAEERVRYIVGRLDGGSAGGSTAPGGAAGV---SAPTHGQDLALTEARSSA--DNGGGQGADRGGDAEGVLSADEAFRREFAERVREAGGLRALALSWAAVSRLEVSFLAWVGEPAKMGQAPIDLKAELLRLASLADALHPPPGAXXXXXXXXXXXXXXXXXXLGAFPLSLPRDALAPPERSGSGATGTAVATTAAHGSSTKGGQGAVAGIGVGTGA---------------------------------AMDPPIGAPLRPRHYVCRGRLSAAAAASLLRGANVGXXXXXXXXXXXXXXWRGGVTVAFAGSSGAGKACLAAEVVGRRDVRAKFGEEVLWLQVGRTGGADLPAFLRRLAHAYHKVVLSKRLRHPPXXXXIGRFRGPR---ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA---ASWFTPYMSGLGLRCLAVLEDVYEAEVVAAASAAGFDLVVTTTLRDLLPDSPLCTRLDVGGLTMDESRSLLRKCSGLDPEATLPLSADNVIKVC 2283
+ V RS+S++S+AS+ +GQ+ APAVAALQG++ AVR AR RR+L+ L +C+ AV + XXXXXXX S + + HGSG+ + R+L AAAE L AE+VGI LAE CSP G+L+ LAL++ ++ G+ +GD G XXX RK + A F AA ERVR IVGRL+ S A AA V +AP HG D++ A + D + D EGV EAFR EF E V EAGGL+AL LSW V+RLE +FLAWV E G DLKAE+LR++S A+AL A PL+ G G++ + + + +S G GA A +PP+GAPLRPRH+VCR RLSA XXXXW+G V FAGSSGAGKACLAAEVVGRRDVRAKFG+ VLWLQVG +GG DL L RLAHAYH+VVL KRLR+PP IGRFRGPR A AXXXXXXXXXXXX A A+WFTPYMSGLGLRCL VLEDV+EAEVVAAASAAGFDLVVTT RDL+PDSPLCTRLDVGGL DE+RSLLR+CSGL +A LP SAD VIK C
Sbjct: 2 KKQVSRSTSTISSASVSHGQAAXXXXXXXXXXXXXXXAPAVAALQGLLAAVRAARACRRQLDALSEICDSAVATLIEACQSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNXXXS--------XXVGDIHGSGNGSDTGAASLVAVAAGAAPAQPPVS-------------RNLRAAAELLGAEVVGITALAEACSPRGILESLALASRRYVSKGKHGEGGHRXXXRHDGDAGGGKPGVGAEEEMKEGAXXXXXXXXXXXXXPVTVVSLRKEKAAKFRAAAERVRLIVGRLEVSRDVTSPAAAAAAEVGVAAAPVHGGDVSFFPAARAVWEDEXXXXXGEAERDDEGV----EAFRSEFVESVEEAGGLKALTLSWTGVARLEEAFLAWVVEAG--GNTGTDLKAEILRVSSRAEAL----------------------VKAEARPLA------------GQGSSSSGFPSLSRLLASYDGPAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSNNVDDHHKPLPLAAEPPVGAPLRPRHHVCRDRLSAXXXXXXXXXXXX-----------XXXXWKGETVVTFAGSSGAGKACLAAEVVGRRDVRAKFGDSVLWLQVGLSGGKDLACLLHRLAHAYHRVVLCKRLRNPPPLPPIGRFRGPRNAEAAAXXXXXXXXXXXXCGVFSTMNATFKAAYNFRGIRCDDPLFPTFCLGLLLKAEATATAAATWFTPYMSGLGLRCLVVLEDVWEAEVVAAASAAGFDLVVTTAFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKAC 756
BLAST of mRNA_S-dermatodea_contig9015.17102.1 vs. uniprot
Match: D8LCK2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK2_ECTSI) HSP 1 Score: 306 bits (785), Expect = 8.680e-88 Identity = 342/756 (45.24%), Postives = 397/756 (52.51%), Query Frame = 1
Query: 85 IAAPAVAALQGVVVAVRGARCNRRRLEPLCGLCEGAVRACVCVVTPXXXXXXXXHPPTHPPRLLRWLRWTIYNKKGGPPGGVLGSTGGLKGNPVLMSEAHGSGDSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHLGAAAEALAAELVGIAGLAEMCSPAGVLKCLALSAAAMAAEAAAGKS-----------CGEGDD-IGSSXXXXXXXXXXXXXXXXVDGFREAE-RKREDASFTAAEERVRYIVGRLDGGSAGGSTAPGGAAGVSA----------PTHGQDLALTEARSSADNGGGQGADRGGDAEGVLSADEAFRREFAERVREAGGLRALALSWAAVSRLEVSFLAWVGEPAKMGQAPIDLKAELLRLASLADALHPPPGAXXXXXXXXXXXXXXXXXXLGAFPLSLPRDALAPPERSGSGATGTAVATTAAHGSSTKGGQGAVAGIGVGTGAAMDPPIGAPLRPRHYVCRGRLSAAAAASLLRGANVGXXXXXXXXXXXXXXWRGGVTVAFAGSSGAGKACLAAEVVGRRDVRAKFGEEVLWLQVGRTGGADLPAFLRRLAHAYHKVVLSKRLRHPPXXXXIGRFRGPRATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASWFTPYMSGLGLRCLAVLEDVYEAEVVAAASAAGFDLVVTTTLRDLLPDSPLCTRLDVGGLTMDESRSLLRKCSGLDPEATLPLSADNVIKVC 2283
+AAPAVAALQG++ AVR AR RR+L+ L +C+ AV + P ++ + HGSG+ + XXXXXXXXXXXXXXXX R+L AAAE L AE+VGI LAE CSP G+L+ LAL+ ++ G+ G G+ +G+ XXXXXXXXXXXXXXXX RK + A F A ERVR IVGRL+ + T+P P HG D++ +AE EAFR EF E V EAGGL+AL LSW V+RLE +FLAWV E G DLKAE+LR++SLA+AL +D P +AG G + + P + S L GA+ G +G V FAGSSGAGKACLAAEVVGRRDVRAKFG+ VLWLQVGR+GG DL L RLAHAYH+VVL KRLR+PP I RFRGPR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA+WFTPYMSGLGLRCL VLEDV+EAEVVAAASAAGFDLVVTT RDL+PDSPLCTRLDVGGL DE+RSLLR+CSGL +A LP SAD VIK C
Sbjct: 213 VAAPAVAALQGLLAAVRAARACRRQLDALSEICDSAVAMLI----------ETCQSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVVGDIHGSGNGSDTGXXXXXXXXXXXXXXXXPSQPPVS---------RNLRAAAELLGAEVVGITALAEACSPRGILESLALATRRDVSKRKPGEGGHRRGGRHDGDAGGGEPGVGAEXXXXXXXXXXXXXXXXXTPVAVVSLRKEKAAKFRATAERVRLIVGRLE--VSRDVTSPXXXXXXXXXXXXXXXXXXPVHGGDVSFFXXXXXXXX--XXXXXXXXEAEREDEGVEAFRSEFVESVEEAGGLKALTLSWTGVARLEEAFLAWVVEAG--GNTGTDLKAEILRVSSLAEALV--------------------------------KDEARP-----------------------------LAGQGSSSSSPGFPSL---------------------SRLLGADGGGAGG-----------KGETVVTFAGSSGAGKACLAAEVVGRRDVRAKFGDSVLWLQVGRSGGTDLACLLHRLAHAYHRVVLCKRLRNPPPLPPISRFRGPR----------NGEAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATWFTPYMSGLGLRCLVVLEDVWEAEVVAAASAAGFDLVVTTAFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKAC 840 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9015.17102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9015.17102.1 >prot_S-dermatodea_contig9015.17102.1 ID=prot_S-dermatodea_contig9015.17102.1|Name=mRNA_S-dermatodea_contig9015.17102.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=761bp TTARRNDVIRSSSSVSTASLYGQSTPAAIAAPAVAALQGVVVAVRGARCNback to top mRNA from alignment at S-dermatodea_contig9015:129..8173- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9015.17102.1 ID=mRNA_S-dermatodea_contig9015.17102.1|Name=mRNA_S-dermatodea_contig9015.17102.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=8045bp|location=Sequence derived from alignment at S-dermatodea_contig9015:129..8173- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9015:129..8173- >mRNA_S-dermatodea_contig9015.17102.1 ID=mRNA_S-dermatodea_contig9015.17102.1|Name=mRNA_S-dermatodea_contig9015.17102.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4566bp|location=Sequence derived from alignment at S-dermatodea_contig9015:129..8173- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |