mRNA_S-dermatodea_contig90028.17094.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig90028.17094.1
Unique NamemRNA_S-dermatodea_contig90028.17094.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig90028.17094.1 vs. uniprot
Match: G4ZZP8_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZZP8_PHYSP)

HSP 1 Score: 75.1 bits (183), Expect = 1.050e-16
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 GRWTLGEHHRFLVGLERFGKDWKGIRTLVETRTIVQIRTHAQKYLIKLSK 150
            GRWT  EH  FL GL+RFGK WK I +LV TRT+VQIRTHAQKYL K S+
Sbjct:   19 GRWTKREHELFLEGLQRFGKSWKKISSLVHTRTLVQIRTHAQKYLQKQSR 68          
BLAST of mRNA_S-dermatodea_contig90028.17094.1 vs. uniprot
Match: D7FXJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.290e-16
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 GRWTLGEHHRFLVGLERFGKD-WKGIRTLVETRTIVQIRTHAQKYLIKLSKGRPF 162
            GRWT  EHH FL G+ RF ++ W GI TL+ TRT++QIRTHAQKY  K+ KG PF
Sbjct:   13 GRWTSEEHHAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPF 67          
BLAST of mRNA_S-dermatodea_contig90028.17094.1 vs. uniprot
Match: A0A1V9ZGA4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGA4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.630e-16
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 GRWTLGEHHRFLVGLERFGKDWKGIRTLVETRTIVQIRTHAQKYLIKLSKGRPF 162
            GRWT  EH  FL GL R+GK WK I  LV TRT+VQIRTHAQKYL K +K +PF
Sbjct:   81 GRWTKKEHELFLEGLRRYGKSWKHIANLVVTRTLVQIRTHAQKYLQKQNKSKPF 134          
BLAST of mRNA_S-dermatodea_contig90028.17094.1 vs. uniprot
Match: A0A0N7L7R3_PLAHL (Protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7R3_PLAHL)

HSP 1 Score: 77.8 bits (190), Expect = 6.970e-16
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 GRWTLGEHHRFLVGLERFGKDWKGIRTLVETRTIVQIRTHAQKYLIKLSKG 153
            GRWT  EH  FL GL+RFGK WK I +LV TRT+VQIRTHAQKYL K S+G
Sbjct:  108 GRWTKREHELFLEGLQRFGKSWKKISSLVHTRTLVQIRTHAQKYLQKQSRG 158          
BLAST of mRNA_S-dermatodea_contig90028.17094.1 vs. uniprot
Match: A0A7S3LKU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LKU2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.610e-15
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 GRWTLGEHHRFLVGLERFGKDWKGIRTLVETRTIVQIRTHAQKYLIKLSK 150
            GRWT  EH RF+ GL+ +GK+WK I  ++ETRTIVQIRTHAQKY  K++K
Sbjct:   90 GRWTKAEHDRFVKGLDVYGKEWKKIAAMIETRTIVQIRTHAQKYFQKIAK 139          
BLAST of mRNA_S-dermatodea_contig90028.17094.1 vs. uniprot
Match: A0A067D317_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D317_SAPPC)

HSP 1 Score: 76.3 bits (186), Expect = 2.000e-15
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 GRWTLGEHHRFLVGLERFGKDWKGIRTLVETRTIVQIRTHAQKYLIKLSKGRP 159
            GRWT  EH  FL GLER+GK WK I  LV TRT+VQIRTHAQKYL K +K  P
Sbjct:   90 GRWTKKEHELFLEGLERYGKSWKHISNLVVTRTLVQIRTHAQKYLQKQNKASP 142          
BLAST of mRNA_S-dermatodea_contig90028.17094.1 vs. uniprot
Match: K0S452_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S452_THAOC)

HSP 1 Score: 76.6 bits (187), Expect = 4.390e-15
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 GRWTLGEHHRFLVGLERFGKDWKGIRTLVETRTIVQIRTHAQKYLIKLSKGR 156
            GRWT  EH  FL GLER GK WK I TL+++RT+VQIRTHAQKY  KL+K R
Sbjct:  311 GRWTAEEHRLFLQGLERHGKGWKKIATLIKSRTVVQIRTHAQKYFQKLAKAR 362          
BLAST of mRNA_S-dermatodea_contig90028.17094.1 vs. uniprot
Match: A0A7S3XSC1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSC1_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 4.870e-15
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 GRWTLGEHHRFLVGLERFGKDWKGIRTLVETRTIVQIRTHAQKYLIKLSK 150
            GRW   EH  FL G+E+FGKDWK I T+V TRT+VQIRTHAQKY +KL K
Sbjct:   60 GRWNEEEHRLFLQGVEKFGKDWKQISTVVLTRTVVQIRTHAQKYFLKLEK 109          
BLAST of mRNA_S-dermatodea_contig90028.17094.1 vs. uniprot
Match: A0A835Z7M4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.930e-15
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    1 GRWTLGEHHRFLVGLERFGKDWKGIRTLVETRTIVQIRTHAQKYLIKLSK 150
            GRWT  EH  FL GL+  GK WK I +L++TRT+VQIRTHAQKY  KL+K
Sbjct:    4 GRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK 53          
BLAST of mRNA_S-dermatodea_contig90028.17094.1 vs. uniprot
Match: A0A0W8DBP4_PHYNI (LHY protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DBP4_PHYNI)

HSP 1 Score: 75.5 bits (184), Expect = 8.220e-15
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 GRWTLGEHHRFLVGLERFGKDWKGIRTLVETRTIVQIRTHAQKYLIKLSKG 153
            GRWT  EH  FL GL+RFGK WK I +LV TRT+VQIRTHAQKYL K S+ 
Sbjct:  132 GRWTKREHELFLEGLQRFGKSWKKISSLVHTRTLVQIRTHAQKYLQKQSRA 182          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig90028.17094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G4ZZP8_PHYSP1.050e-1670.00Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
D7FXJ4_ECTSI2.290e-1661.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9ZGA4_9STRA3.630e-1666.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A0N7L7R3_PLAHL6.970e-1670.59Protein n=1 Tax=Plasmopara halstedii TaxID=4781 Re... [more]
A0A7S3LKU2_9STRA1.610e-1564.00Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A067D317_SAPPC2.000e-1567.92Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
K0S452_THAOC4.390e-1567.31Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3XSC1_HETAK4.870e-1568.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z7M4_9STRA4.930e-1564.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A0W8DBP4_PHYNI8.220e-1568.63LHY protein n=9 Tax=Phytophthora TaxID=4783 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig90028contigS-dermatodea_contig90028:189..350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue2.3e-12
Seed eggNOG ortholog159749.K0S452
EggNOG free text desc.SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
EggNOG OGs2XD95@2836,KOG0724@1,KOG0724@2759
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925379.8064482-CDS-S-dermatodea_contig90028:188..3501622925379.8064482-CDS-S-dermatodea_contig90028:188..350Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90028 189..350 -
1694079894.0595586-CDS-S-dermatodea_contig90028:188..3501694079894.0595586-CDS-S-dermatodea_contig90028:188..350Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90028 189..350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig90028.17094.1prot_S-dermatodea_contig90028.17094.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig90028 189..350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig90028.17094.1

>prot_S-dermatodea_contig90028.17094.1 ID=prot_S-dermatodea_contig90028.17094.1|Name=mRNA_S-dermatodea_contig90028.17094.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
GRWTLGEHHRFLVGLERFGKDWKGIRTLVETRTIVQIRTHAQKYLIKLSK
GRPF
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mRNA from alignment at S-dermatodea_contig90028:189..350-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig90028.17094.1 ID=mRNA_S-dermatodea_contig90028.17094.1|Name=mRNA_S-dermatodea_contig90028.17094.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at S-dermatodea_contig90028:189..350- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGCGCTGGACGTTGGGAGAGCACCACAGGTTCCTCGTCGGGCTGGAGCG CTTCGGCAAGGACTGGAAGGGCATCCGAACTCTCGTCGAGACCCGCACCA TCGTGCAGATCCGCACCCACGCGCAGAAGTACTTGATCAAGCTATCCAAG GGCCGCCCATTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig90028:189..350-

>mRNA_S-dermatodea_contig90028.17094.1 ID=mRNA_S-dermatodea_contig90028.17094.1|Name=mRNA_S-dermatodea_contig90028.17094.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig90028:189..350- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGCGCTGGACGTTGGGAGAGCACCACAGGTTCCTCGTCGGGCTGGAGCG
CTTCGGCAAGGACTGGAAGGGCATCCGAACTCTCGTCGAGACCCGCACCA
TCGTGCAGATCCGCACCCACGCGCAGAAGTACTTGATCAAGCTATCCAAG
GGCCGCCCATTCGGGCGCTGGACGTTGGGAGAGCACCACAGGTTCCTCGT
CGGGCTGGAGCGCTTCGGCAAGGACTGGAAGGGCATCCGAACTCTCGTCG
AGACCCGCACCATCGTGCAGATCCGCACCCACGCGCAGAAGTACTTGATC
AAGCTATCCAAGGGCCGCCCATTC
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