mRNA_S-dermatodea_contig900.17092.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig900.17092.1 vs. uniprot
Match: D7G6E0_ECTSI (Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6E0_ECTSI) HSP 1 Score: 521 bits (1342), Expect = 8.010e-163 Identity = 288/365 (78.90%), Postives = 304/365 (83.29%), Query Frame = 2
Query: 719 QEGIVPAATNLSKLDDEDSMRACATVFALLSADPRGRARFVERKSALVSLFELLRSKDQGTQVICGKAVCNLVSCPDSQLAAVEAGAVPCLRQLAKLGVPEIEAAIAMTFLLMSGNSKCRSEVISTALPTVVYLSRSPNAEARCTCARTLGVLAWHDDSRGALSGVGVARALVGIIEDFSEGDEGQKDQLERCTRALYYLATDQSSAGCMVEAGTIRALSKVMEVGAVESVLGLVAAALRCLTQVASPKEASLXXXXXXXXXXXXXXXXXXXXXXXE---TANEEETARMAELVAEQGAGALVRRLVEAAGSIEAPTESTEATLYDCAVVVFNLAAAASGCAALQRDLVGERGVLPALATLAGVR 1804
+EGIVPA TNLSKLDDEDSMRACATVFALLSADPRGRA+FV+RKSALVSLF LLRS DQGTQVICGKAVCNLVSCPDSQL+AV AGAVPCLRQLAKLGV EIEA+IAM FLLMSGNSKCR EV STALPTVVYLSRSPN EARCTCARTLGVLAWHDDSR AL+GVGVARALVGIIED+SEGDE QKDQLE CTRALYYLATDQ SAGCMVEAGTIRALSKVMEVGA ESVL LVAAALRCLTQV + E E EE+ R+A+LVA QGAGALVRRLVEA+GS EAP +S EATLYDCAVVVFNLA +A+ CA LQRDLVGE GVLPALATLA V+
Sbjct: 905 EEGIVPATTNLSKLDDEDSMRACATVFALLSADPRGRAKFVQRKSALVSLFGLLRSTDQGTQVICGKAVCNLVSCPDSQLSAVGAGAVPCLRQLAKLGVSEIEASIAMAFLLMSGNSKCRMEVTSTALPTVVYLSRSPNFEARCTCARTLGVLAWHDDSRRALTGVGVARALVGIIEDYSEGDECQKDQLEMCTRALYYLATDQRSAGCMVEAGTIRALSKVMEVGATESVLPLVAAALRCLTQVPTRVETPAKDKDKEKHKDGTRMGASGDGDDAEERIATIEEDAPRIAQLVASQGAGALVRRLVEASGSAEAPADSREATLYDCAVVVFNLAESAASCAELQRDLVGEGGVLPALATLAEVK 1269
BLAST of mRNA_S-dermatodea_contig900.17092.1 vs. uniprot
Match: F0Y3D4_AURAN (Vacuolar protein 8 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3D4_AURAN) HSP 1 Score: 167 bits (424), Expect = 1.680e-38 Identity = 161/514 (31.32%), Postives = 237/514 (46.11%), Query Frame = 2
Query: 710 ASKQEGIVPAATNLSKLDDEDSMRACATVFALLSAD-PRGRARFVERKSALVSLFELLRSKDQGTQVICGKAVCNLVSCPDSQLAAVEAGAVPCLRQLAKLGVPEIEAAIAMTFLLMSGNSKCRSEVIST-ALPTVVYLSRSPNAEARCTCARTLGVLAWHDDS----RGALSGVGVARALVGIIEDFSEGDEGQKDQLERCTRALYYLATDQSSAGCMVEAGTIRALSKVMEVGAVESVLGLVAAALRCLTQVASPKEASLXXXXXXXXXXXXXXXXXXXXXXXETANEEETARMAELVAEQGAGALVRRLVEAAGSIE-------APTESTEATLYD-CAVVVFNLAAAASGCAALQR--DLVGERGVLPALATLAGVRSTRDLVMATISLLSNDPSNREEVIAQGGA-ELTLTLAGGLDDWTNQRTDVVTNAVCALFLMSRAPPVARERLKEGGKVTQFLANLSKRGGEVQKKVASDALGNLTRDVGMGIEEGTVAALISRSLEGPGDTDA 2200
A +EG+V A + LS+L +E++MR CA++F LSA P GRA VER+S L+ +F L+RS+D+ TQV+CGK CNL+ DSQ AV AGAV L L LG PE E A A + L++G+ CR E++ LP ++ +RSPN R +C R L LAW + R L + LV ++E + C A A + AG A A + G + V+ + + AS E A A L + A A + +LVE G++ A +++ A +++ CA ++++A QR ++ ++G L A+ L + L AT+ LLS +P +RE ++A A +L L LA +D V + F +SR ARE L G V L LS+ G + S+AL NL+ GIEEGTV+ LI+ +L G T+A
Sbjct: 942 ALAKEGLVQACSVLSRLSEEETMRVCASIFCTLSAQGPAGRALLVERRSTLLDVFGLMRSRDRTTQVVCGKTACNLLGHVDSQQPAVRAGAVSVLTSLCTLGDPEAEVAAADAYFLIAGDEACRLEMVEAKVLPVLITNARSPNGPTRQSCLRVLAHLAWWKNVWKNVRAPLLTASIVPVLVVLVE-------------QTCGAAA---ALEAEPAGDADAAAPAAAPADEKPRG--DDVVQDLTLYIFTYMTFASEDHRVAMVRDDVVPALELLYRRLTLGGPPERARRVRMFVAAALRSLAAATAALDKLVED-GAVRLLCDMMCAEDDASNAEVFEHCARALYSVARE-------QRFNGVLLDQGALEAIPRLGALPECYALAAATLHLLSLEPPHREMIVADVAARDLLLRLAEAPED--PHAASTVQSCAQTFFWLSRCTAQAREELASAGLVP-LLIRLSRHGDDKVASSCSEALKNLSSGGSGGIEEGTVSTLIAMTLSGGPSTNA 1426
BLAST of mRNA_S-dermatodea_contig900.17092.1 vs. uniprot
Match: A0A835YNZ3_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNZ3_9STRA) HSP 1 Score: 116 bits (290), Expect = 8.590e-23 Identity = 66/154 (42.86%), Postives = 84/154 (54.55%), Query Frame = 2
Query: 722 EGIVPAATNLSKLDDEDSMRACATVFALLSADPRGRARFVERKSALVSLFELLRSKDQGTQVICGKAVCNLVSCPDSQLAAVEAGAVPCLRQLAKLGVPEIEAAIAMTFLLMSGNSKCRSEVISTALPTVVYLSRSPNAEARCTCARTLGVLAW 1183
EG+V AAT+LS+L DE SMRACA FA L+ADP GRAR R++AL + F+LLR++D GT+ + G AV NL+ P +E ++A S + V LPTVV+LSRSPN AR C R L LAW
Sbjct: 640 EGLVAAATHLSRLPDEPSMRACAAAFAALTADPAGRARLAARRAALAAAFDLLRARDAGTRALVGAAVINLLRSGXXXXXXXXXXXXXXXXXXXXXXAPAVETSVASXXYXXSVGAAREDIVRGGGLPTVVFLSRSPNTAARWACVRALAALAW 793
BLAST of mRNA_S-dermatodea_contig900.17092.1 vs. uniprot
Match: A0A7S3YJF8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJF8_HETAK) HSP 1 Score: 99.8 bits (247), Expect = 2.100e-20 Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = 2
Query: 722 EGIVPAATNLSKL-DDEDSMRACATVFALLSADPRGRARFVERKSALVSLFELLR-SKDQGTQVICGKAVCNLVSCPDSQLAAVEAGAVPCLRQLAKLGVPEIEAAIAMTFLLMSGNSKCRSEV 1087
EG++ AA LSK DD ++ AC+ ++ +LS R + RK A +LF LLR ++D QV CGKA+CNL+SC DSQLA V GAVP L LA+LG EA A F L+ G+++CR+ +
Sbjct: 35 EGVLTAAAALSKQKDDPETQLACSNIYGVLSGHAGARRALLGRKGAAAALFALLRHAQDHTAQVTCGKALCNLLSCRDSQLATVRKGAVPVLGWLARLGDAATEARCADAFFLLCGDAECRARL 158
BLAST of mRNA_S-dermatodea_contig900.17092.1 vs. uniprot
Match: A0A7S2B8X0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8X0_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 3.370e-10 Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1
Query: 1 EECREQLCNCGALPALIQLASMDDEPTKLRCVVAFANLSCEYTIRGQM 144
E+CR QLC+ GALPALIQLA M+D T+LRC VAFANLS E T++G M
Sbjct: 35 EQCRRQLCDMGALPALIQLAKMNDMKTRLRCAVAFANLSYESTVQGLM 82
BLAST of mRNA_S-dermatodea_contig900.17092.1 vs. uniprot
Match: A0A6S8WUQ6_9STRA (Vacuolar protein 8 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8WUQ6_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.990e-7 Identity = 51/143 (35.66%), Postives = 63/143 (44.06%), Query Frame = 1
Query: 1 EECREQLCNCGALPALIQLASMD--DEPTKLRCVVAFANLSCEYTIRGQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALMMIALVRSVSLETKQICAKALLNLIA-----EDTLPALIEASL 408
E CR LC G L LI LA D+ T+LRC VAFANLS E ++G+M +ALMMI +VR+VS TKQICAKA+LNL+ +D LP L + L
Sbjct: 732 EPCRRPLCAMGTLEPLISLARDRGADDTTRLRCAVAFANLSHEPAVQGEMVKAGVVPVVAELSNSYCEENQLYCARALCNLGCHSGSEQAIVEQGGVTALMMICMVRAVSHFTKQICAKAILNLVCAPLVIKDWLPQLADEGL 874 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig900.17092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig900.17092.1 >prot_S-dermatodea_contig900.17092.1 ID=prot_S-dermatodea_contig900.17092.1|Name=mRNA_S-dermatodea_contig900.17092.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=777bp MQHKVLQPLILRVFRRRRIAIASKQEGIVPAATNLSKLDDEDSMRACATVback to top mRNA from alignment at S-dermatodea_contig900:8780..18200- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig900.17092.1 ID=mRNA_S-dermatodea_contig900.17092.1|Name=mRNA_S-dermatodea_contig900.17092.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=9421bp|location=Sequence derived from alignment at S-dermatodea_contig900:8780..18200- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig900:8780..18200- >mRNA_S-dermatodea_contig900.17092.1 ID=mRNA_S-dermatodea_contig900.17092.1|Name=mRNA_S-dermatodea_contig900.17092.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4662bp|location=Sequence derived from alignment at S-dermatodea_contig900:8780..18200- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |