mRNA_S-dermatodea_contig899.17073.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig899.17073.1 vs. uniprot
Match: D8LMC1_ECTSI (RAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMC1_ECTSI) HSP 1 Score: 308 bits (789), Expect = 3.690e-90 Identity = 267/582 (45.88%), Postives = 313/582 (53.78%), Query Frame = 1
Query: 814 HPEEGLREIGPLKFGSGAGGETVEEFSAGETPRQVRLSALLTRKLSARAGECKPMELAMAAWGLAVLGQRDEACLSAIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQGRVSWEWKEASSG---------NNGAKGSWKATIDPSCSADQDSAPRPAAELAATAAAAQKAE---------------------------------------AELANRGDGCVSTGGPSEDAGIGAEGIGGRLELGRGAGSEAGVAASSGVGQGGLDGEGGGSSGSFSCAPPRLIAQDSPSASVPEATASASPASPAGVESDGGVVTTVGGPGEAVDDAEGEERGQWSSDSEVQVASVVLAPQDLAMLSWGLSSLCQEWLPGQPAAYRSLAVLAKAARKCVGSFGPQDLSMVSLALARLSWDDPPLMRAMMAHTTETLRAFKPQELSNMAWACARLYVKDSNFWSSVQTQAKRMLAGPGMKAXXXXXXXXXLAVMGEADSVLLADLFRSAEAKRADLTVIDSHQLYQVYLLWKEDIPELWQELDEEFLLELKRRWTDNKERMKRSSFSHLEVSEV 2415
HPE GL E+GPL+FGSGA + TP + RL +LL KLS RA ECKP ELAMAAWGLAVLG+RDE LSA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX W+GRVSWEWK +N G WKATID + + PA A A ++ A + + V+ GG +E + +GG P S S++ TA +P +GV G+ A R WS SEV+V SV+L PQDLAMLSWG SSL QE LP QPAAYR+L VLAKAAR+CVG+F PQD+SMVSLALAR+SWDDP LM+AM + T WS++Q QAKRML GPGM A LAVMGEAD LL +L RSA+A+R D T+I+SHQLYQVYLLW +D+PELW+ELD EFL+ LKRRWTDN++R KRSS SHLEVS+
Sbjct: 6 HPENGLGEVGPLRFGSGAREKGDTPPVPLGTPGESRLPSLLAGKLSERAMECKPRELAMAAWGLAVLGERDENLLSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEPLQWRGRVSWEWKHGKKKKSRRGGKGHDNRTTGFWKATIDRTWAMRLPGGAPPARPAAMVMAEKERLAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVVDAEKDSVTEGGSTEWRSV--HRVGGA---------------------------------------PATSTTTSRSSAAASGTAEGAPHRFSGVXXXXXXXXXXXXXGQPFSAAALSSREHWSCASEVEVGSVILTPQDLAMLSWGFSSLSQECLPCQPAAYRALDVLAKAARECVGNFRPQDVSMVSLALARMSWDDPRLMKAMASRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSALQKQAKRMLDGPGMSAQEIANLAWALAVMGEADVELLEELLRSAQAQRGDFTLIESHQLYQVYLLWGKDMPELWKELDGEFLMALKRRWTDNQQRTKRSSCSHLEVSQT 546
BLAST of mRNA_S-dermatodea_contig899.17073.1 vs. uniprot
Match: A0A6H5K364_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K364_9PHAE) HSP 1 Score: 272 bits (695), Expect = 4.900e-78 Identity = 244/446 (54.71%), Postives = 276/446 (61.88%), Query Frame = 1
Query: 1 PVHLPPDSEWNSLLQERLQRKLRKPKRLARVAAXXXXXXXXXXXXXXGAALSSTPKVASSPTTETGGTEMGMHDVSCGSDGADGEEIAREEAG--AASAGARVRVALGVGVTAGLG--------GHATGVA-EGIGEVGRDGHEGAGECQEEGSVFVRRGPPLKKSSPGGPFGASKARAWHAQQVVQSAVTPTQAMRAVLDRPLRANYVTVSTALNRVAKLKA-RRSPRDVITEEERKYLGVLLQVTEKLVASDMVNARNLAQLLWSVAKLGNPTACDGEFGRHPEEGLREIGPLKFGSGAGGETVEEFSAGETPRQVRLSALLTRKLSARAGECKPMELAMAAWGLAVLGQRDEACLSAIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQGRVSWEWKEAS----SG------NNGAKGSWKATID 1272
P P +SEW S+L+ERL+RKLRKP R R A A S P +S PT + DV + + + E G A +A A R + AG G G+A V E + E G G G V PPLK+ PGGPFGASKA AWHAQQVVQSAVTP QAMRAVLDRPLR+NYV+VSTALNRVAKL A RR + EEE KYLG+LL+VTE+LV +D+VNARNLAQLLWS+AKLGNP A GE HPEEGL E+GPL+FGSGA + P + RL +LL KLS RA ECKP ELAMAAWGLAVL +RDE LSA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX W+GRVSWEWK+ SG +N G WKATID
Sbjct: 87 PTPAPAESEWESILRERLERKLRKPGRRKRARAAAT------------ARTSPNPTFSSPPTQ----WQQQQQDVESHFPANNDNQKKQSEVGGTAEAAAATPRFSGATTSEAGAGTEPETGTYGNAETVKKESLREEANQGRRGGARRAVRGRVSP---PPLKRRPPGGPFGASKAVAWHAQQVVQSAVTPLQAMRAVLDRPLRSNYVSVSTALNRVAKLAASRRRGGGLKGEEEPKYLGILLKVTEELVDADLVNARNLAQLLWSLAKLGNPEASSGEVLEHPEEGLGEVGPLRFGSGAREKGDTPPVPLGPPCEGRLPSLLAGKLSERAMECKPKELAMAAWGLAVLRERDENLLSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEPLQWRGRVSWEWKQGKKKKKSGRVGKGHDNWTTGFWKATID 513
BLAST of mRNA_S-dermatodea_contig899.17073.1 vs. uniprot
Match: A0A6H5K8K8_9PHAE (RAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K8_9PHAE) HSP 1 Score: 129 bits (323), Expect = 6.430e-30 Identity = 65/100 (65.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query: 2110 MLAGPGMKAXXXXXXXXXLAVMGEADSVLLADLFRSAEAKRADLTVIDSHQLYQVYLLWKEDIPELWQELDEEFLLELKRRWTDNKERMKRSSFSHLEVS 2409
ML GPGM+A LAVMGEAD LL +L RSA+A+R++ T+I+SHQLYQVYLLW +D+PELW+ELD EFL+ LKRRWTDN++R KRSS SHLE+S
Sbjct: 1 MLDGPGMRAQEIANLAWALAVMGEADVELLQELLRSAQAQRSNFTLIESHQLYQVYLLWGKDMPELWKELDGEFLMALKRRWTDNQQRTKRSSCSHLEIS 100 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig899.17073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig899.17073.1 >prot_S-dermatodea_contig899.17073.1 ID=prot_S-dermatodea_contig899.17073.1|Name=mRNA_S-dermatodea_contig899.17073.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=810bp PVHLPPDSEWNSLLQERLQRKLRKPKRLARVAAAAAATTAAPAPAPAGAAback to top mRNA from alignment at S-dermatodea_contig899:11236..24350+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig899.17073.1 ID=mRNA_S-dermatodea_contig899.17073.1|Name=mRNA_S-dermatodea_contig899.17073.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=13115bp|location=Sequence derived from alignment at S-dermatodea_contig899:11236..24350+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig899:11236..24350+ >mRNA_S-dermatodea_contig899.17073.1 ID=mRNA_S-dermatodea_contig899.17073.1|Name=mRNA_S-dermatodea_contig899.17073.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4860bp|location=Sequence derived from alignment at S-dermatodea_contig899:11236..24350+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |