mRNA_S-dermatodea_contig8956.17039.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8956.17039.1
Unique NamemRNA_S-dermatodea_contig8956.17039.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8956.17039.1 vs. uniprot
Match: A0A6H5KAJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ9_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 6.890e-56
Identity = 116/235 (49.36%), Postives = 146/235 (62.13%), Query Frame = 1 
Query:    1 QLDLVLFNYNEGSESGPDLVGSAFLVELIGNPASNTTGTVNQLAVTSSAATVQSVGGDPLP----------------IIGTGRDLFCFQNDPYECEGYLGDA----TIELAGTLRCSACEGGAFTGIGSAQGAPTLAPVEFDDDDGLSKMGQERAQGGTPSPTPVGGLLSSSGSASGSVDGAALDATSDAELFGVTGSMRWVVVGLIVGLSGAVLVCLCIVTVCRRVPGGPGKRA 645
            +L+L+ FN+N GS S PDLVGSA L+E  G PASNTTG + QL  ++S+A                           ++G   D++CFQNDPY+CE Y GD+     ++L GT+RC+ C+G AFTGIGSA GAPT AP+  DDDDGLS+MGQERAQGGTPSP  V G                 +  S+ EL G TG+MRWVVVGLI  L  A+L+CLC++TVCRR  G  G+RA
Sbjct:  378 ELELLQFNWNGGSASSPDLVGSALLLERTGTPASNTTGPLEQLDPSTSSAXXXXXXXXXXXXXXXXXXXXXXTAGSTLVGVATDIYCFQNDPYDCEAYFGDSDGEIAVQLTGTVRCNVCQGSAFTGIGSAAGAPTPAPIVTDDDDGLSQMGQERAQGGTPSPAGVDGSXXXXXXXXXXXXXVP-EEESEPELLGTTGTMRWVVVGLIAALGSALLICLCMLTVCRRRKG-RGERA 610
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BLAST of mRNA_S-dermatodea_contig8956.17039.1 vs. uniprot
Match: D7G311_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G311_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.180e-42
Identity = 86/169 (50.89%), Postives = 109/169 (64.50%), Query Frame = 1 
Query:    1 QLDLVLFNYNEGSESGPDLVGSAFLVELIGNPASNTTGTVNQLAVTSSAATVQSVGGDPLP------------------IIGTGRDLFCFQNDPYECEGYLGDA----TIELAGTLRCSACEGGAFTGIGSAQGAPTLAPVEFDDDDGLSKMGQERAQGGTPSPTPVGG 441
            +L+L+ FN+N GS S PDLVGSA L+E  G PASNTTG + Q+  ++S+                              ++G  RD++CFQNDPY+CE Y GD+     ++L GT+RC+AC+G AFTGIGSA GAPT AP+  DDDDGLS+MGQERAQGGTPSP  V G
Sbjct:  399 ELELLQFNWNGGSSSSPDLVGSALLLERTGTPASNTTGPLEQVDPSTSSXXXXXXXXXXXXXXXXXXXXXXXXXTAGSTLVGVARDIYCFQNDPYDCEAYFGDSDGEIAVQLTGTVRCNACQGSAFTGIGSAAGAPTPAPIVADDDDGLSQMGQERAQGGTPSPAGVDG 567
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8956.17039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAJ9_9PHAE6.890e-5649.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G311_ECTSI1.180e-4250.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8956contigS-dermatodea_contig8956:6227..7992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size672
Cds size672
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925374.7656925-CDS-S-dermatodea_contig8956:6226..62831622925374.7656925-CDS-S-dermatodea_contig8956:6226..6283Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8956 6227..6283 -
1694079890.3576987-CDS-S-dermatodea_contig8956:6226..62831694079890.3576987-CDS-S-dermatodea_contig8956:6226..6283Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8956 6227..6283 -
1622925374.7760582-CDS-S-dermatodea_contig8956:7377..79921622925374.7760582-CDS-S-dermatodea_contig8956:7377..7992Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8956 7378..7992 -
1694079890.3662229-CDS-S-dermatodea_contig8956:7377..79921694079890.3662229-CDS-S-dermatodea_contig8956:7377..7992Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8956 7378..7992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8956.17039.1prot_S-dermatodea_contig8956.17039.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8956 6227..7992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8956.17039.1

>prot_S-dermatodea_contig8956.17039.1 ID=prot_S-dermatodea_contig8956.17039.1|Name=mRNA_S-dermatodea_contig8956.17039.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=224bp
QLDLVLFNYNEGSESGPDLVGSAFLVELIGNPASNTTGTVNQLAVTSSAA
TVQSVGGDPLPIIGTGRDLFCFQNDPYECEGYLGDATIELAGTLRCSACE
GGAFTGIGSAQGAPTLAPVEFDDDDGLSKMGQERAQGGTPSPTPVGGLLS
SSGSASGSVDGAALDATSDAELFGVTGSMRWVVVGLIVGLSGAVLVCLCI
VTVCRRVPGGPGKRAGRGAGGGGG
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mRNA from alignment at S-dermatodea_contig8956:6227..7992-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8956.17039.1 ID=mRNA_S-dermatodea_contig8956.17039.1|Name=mRNA_S-dermatodea_contig8956.17039.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1766bp|location=Sequence derived from alignment at S-dermatodea_contig8956:6227..7992- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTCGACCTGGTCCTCTTCAACTACAACGAGGGCTCTGAATCAGGCCC
GGACCTCGTCGGATCAGCCTTCCTGGTGGAGCTCATCGGGAACCCGGCCT
CCAACACGACCGGCACGGTGAACCAACTCGCCGTCACATCCTCCGCGGCT
ACCGTACAATCCGTAGGCGGCGACCCCCTTCCCATCATCGGGACCGGCCG
CGACCTGTTCTGCTTCCAGAACGACCCTTACGAGTGCGAGGGCTACTTGG
GCGACGCGACGATAGAGCTCGCCGGCACCCTGCGCTGCTCCGCCTGCGAA
GGGGGAGCGTTCACCGGCATCGGCTCCGCTCAAGGGGCTCCGACTCTGGC
CCCCGTCGAGTTCGACGATGATGACGGTCTGTCGAAGATGGGGCAGGAGC
GCGCACAGGGCGGCACCCCGTCTCCCACCCCAGTGGGAGGTTTGCTCAGC
AGCAGCGGGAGCGCGAGCGGCTCTGTTGACGGAGCGGCGCTGGACGCGAC
CTCGGACGCTGAGCTGTTCGGCGTGACCGGAAGCATGAGGTGGGTGGTGG
TTGGGCTCATCGTGGGGCTCTCGGGCGCGGTGCTGGTGTGCCTCTGCATC
GTGACTGTCTGCAGGGTGTCGGCCATGAGGAAGAGGGAGGAACAACTGGA
CCAGGACTCTCGGTCGGCGGTAGGTCCGCGCGCTCCGTCGCCCGACGACG
CCACCGCGGGGGGTTTCCCGCGCAGGATCCCTCTCGCCACCGCGAGGGTC
GCCAGCGTAGCGAGCTCGCCGAGCGAGGCCATGTTCTTCGCGGTTTCACC
GGGGGGCACGACGGTCGTCCCGGGCTCCAAGGTCGCCTCGCGGCCAGGCT
CGCGCCGGGACCCACACGCGGTGACTCCCGCGTCCCAGCGCAGGAATCGA
GAGGTCGCTCGGCAGCGGGTGATCCAGATGTCTGCGGAGGCGGACCGACT
CGCGGAGCACGACTTCTGGCAGTCGCCCAAGAACGGGTGGGGGGCAAGCG
GGGAGGGGATGGCGGTTACGGGAACGCCGAACTCCTCGAGACGGGGGAGC
TTCACCCCGCTACCTGAGACGGAGCCCCTTCAGCTCCAGCAAAGTAATAA
GAGTAGCAAAAATTCGGGTGGAAGAGGCCGGGATGATCATCGGAGCGTGG
CGCCTGGGAGTTTCGGGGAGAGGCGGGAGGCAAGCCGCGGAACGGTCCGT
GGCCGCACGACGATGAAGGACGGTAGGCAGGTTGGGACGCAGGCGGCGAT
GACGGCGACGTCTGGGCGCCACCGTCATTGGCGCTCCGGAGAGACCGTTA
CCACGCGAGAACTAGTTGCCAGAAAGCAGTCCAGGTCCCTCACTCCGGAG
AAGGACATGATCACCCCAGAAAAGGACCTGGACCCTTCCCTGATGAGGAG
GGTCGTGAGAACCCCGGCGGGCGGCGCGCGTCTCCCGATCAGCGCGTCGC
GCGGATCCCCCGCCTCTGCCGCCGCCTTGGGCGCTGGCGGCGCGGGTTCC
CGGGACACGTACTCCTCCTCCTCCGGCAAGGTCGCCCCTCAAGCGATGGT
TTCGAGTTGGGTTCCGGACACGATAGCCTTGTCGGAGGATTCGCTCGAGG
ATACGTCTCGATCGAAAAGCACTAGTCCGGTGCCGAAGCCGCGCCGGGCG
AGATCCAGGAGCAGAAACGAAAACACGTCTCACCCGCGCGCTGTTGGGCC
GAAGCCGAGCGGGTCCCGGGGGGGCCGGGGAAAAGGGCGGGCAGAGGAGC
AGGTGGAGGTGGAGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8956:6227..7992-

>mRNA_S-dermatodea_contig8956.17039.1 ID=mRNA_S-dermatodea_contig8956.17039.1|Name=mRNA_S-dermatodea_contig8956.17039.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at S-dermatodea_contig8956:6227..7992- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTCGACCTGGTCCTCTTCAACTACAACGAGGGCTCTGAATCAGGCCC
GGACCTCGTCGGATCAGCCTTCCTGGTGGAGCTCATCGGGAACCCGGCCT
CCAACACGACCGGCACGGTGAACCAACTCGCCGTCACATCCTCCGCGGCT
ACCGTACAATCCGTAGGCGGCGACCCCCTTCCCATCATCGGGACCGGCCG
CGACCTGTTCTGCTTCCAGAACGACCCTTACGAGTGCGAGGGCTACTTGG
GCGACGCGACGATAGAGCTCGCCGGCACCCTGCGCTGCTCCGCCTGCGAA
GGGGGAGCGTTCACCGGCATCGGCTCCGCTCAAGGGGCTCCGACTCTGGC
CCCCGTCGAGTTCGACGATGATGACGGTCTGTCGAAGATGGGGCAGGAGC
GCGCACAGGGCGGCACCCCGTCTCCCACCCCAGTGGGAGGTTTGCTCAGC
AGCAGCGGGAGCGCGAGCGGCTCTGTTGACGGAGCGGCGCTGGACGCGAC
CTCGGACGCTGAGCTGTTCGGCGTGACCGGAAGCATGAGGTGGGTGGTGG
TTGGGCTCATCGTGGGGCTCTCGGGCGCGGTGCTGGTGTGCCTCTGCATC
GTGACTGTCTGCAGGCAGCTCGACCTGGTCCTCTTCAACTACAACGAGGG
CTCTGAATCAGGCCCGGACCTCGTCGGATCAGCCTTCCTGGTGGAGCTCA
TCGGGAACCCGGCCTCCAACACGACCGGCACGGTGAACCAACTCGCCGTC
ACATCCTCCGCGGCTACCGTACAATCCGTAGGCGGCGACCCCCTTCCCAT
CATCGGGACCGGCCGCGACCTGTTCTGCTTCCAGAACGACCCTTACGAGT
GCGAGGGCTACTTGGGCGACGCGACGATAGAGCTCGCCGGCACCCTGCGC
TGCTCCGCCTGCGAAGGGGGAGCGTTCACCGGCATCGGCTCCGCTCAAGG
GGCTCCGACTCTGGCCCCCGTCGAGTTCGACGATGATGACGGTCTGTCGA
AGATGGGGCAGGAGCGCGCACAGGGCGGCACCCCGTCTCCCACCCCAGTG
GGAGGTTTGCTCAGCAGCAGCGGGAGCGCGAGCGGCTCTGTTGACGGAGC
GGCGCTGGACGCGACCTCGGACGCTGAGCTGTTCGGCGTGACCGGAAGCA
TGAGGTGGGTGGTGGTTGGGCTCATCGTGGGGCTCTCGGGCGCGGTGCTG
GTGTGCCTCTGCATCGTGACTGTCTGCAGGCGGGTCCCGGGGGGGCCGGG
GAAAAGGGCGGGCAGAGGAGCAGGTGGAGGTGGAGGTCGGGTCCCGGGGG
GGCCGGGGAAAAGGGCGGGCAGAGGAGCAGGTGGAGGTGGAGGT
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