mRNA_S-dermatodea_contig8928.17018.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8928.17018.1
Unique NamemRNA_S-dermatodea_contig8928.17018.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8928.17018.1 vs. uniprot
Match: A0A6H5JTA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA4_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 2.060e-91
Identity = 214/379 (56.46%), Postives = 245/379 (64.64%), Query Frame = 3 
Query:  102 EVLDLRARRAELEQRLAAARSALSSARERREFMEEEAEQAREYGKKLAQEMSRLARIAQALPPDQSSSLEKLRRLAATLSEVEQQEKGVLEDGQAQEDALRAEIDEFTGRQKGS--------------QPPPGPDAASASESTSAPAAGRHSEVENAQGRGGAAGGRARSGGA-TLENSADDPLAAAEAPDRDRGEGGENGGRRARGDPAG------VKRVAVVA---------------RAAKKKTP--EGKALLAEGLHRIEAAHEEAAAEREAVASRLSRLRLAVARRQREEDATPGHAELLQYLLRFEELGQHALEREKQLRRCRTERSTVAQTREFLANEARLLEAIASGAEEAARGGKGARETYLRQLEGILQ 1124
            EVL LR R AELE+RL AAR AL+SARERREFMEEEAEQAR+YG KLAQEM+RL RI + LPPD+S+SLEKLRRL ATL+E+E+QE+  LE G+A+E ALR EI EFTG   G                     DAA A+    APA           G GG   G+ R GG   LE + DDPLAA   P   + E     G      PA       V R AVV                RA  +K P  EGKAL AEGLHRIEAA+E A AERE  A+RLSRLRLAVARRQREEDA  GHAELLQYLLRFEELGQH+LER++QLRRCR ER  ++ TRE LA +ARLLE IA G EEA+ GGKG RE YLRQ++GI++
Sbjct:    8 EVLSLRERGAELEERLQAARIALTSARERREFMEEEAEQARDYGDKLAQEMARLGRITRTLPPDESASLEKLRRLVATLTEIERQEQAALEQGKAREAALRTEIAEFTGETTGDGXXXXXXXXXXXXXXXXXXXDAAPAT--AGAPA-----------GEGGGRAGKGREGGGFVLEKAVDDPLAAMAEPQEHQEEDKSGAGNIVGAVPAAGVGTVSVLRTAVVLGXXXXXXXXXXXPAERANHRKKPALEGKALFAEGLHRIEAAYEVAVAEREESAARLSRLRLAVARRQREEDAALGHAELLQYLLRFEELGQHSLERQEQLRRCRAERLMLSLTRELLAKQARLLETIAGGVEEASTGGKGVREAYLRQIKGIVE 373
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BLAST of mRNA_S-dermatodea_contig8928.17018.1 vs. uniprot
Match: D7G045_ECTSI (Similar to fidipidine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G045_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 4.220e-86
Identity = 206/432 (47.69%), Postives = 239/432 (55.32%), Query Frame = 3 
Query:  198 MEEEAEQAREYGKKLAQEMSRLARIAQALPPDQSSSLEKLRRLAATLSEVEQQEKGVLEDGQAQEDALRAEIDEFTGRQKGSQPPPGPDAASASESTSAPAAGRHSEVENAQGRGGAAGGRARSGGAT---------------------------------LENSADDPLAAAEAPDRDRGEGGENGGRRARGD---------------------------PAGVKRVAVVARAAKKKTPEGKALLAEGLHRIEAAHEEAAAEREAVASRLSRLRLAVARRQREEDATPGHAELLQYLLRFEELGQHALEREKQLRRCRTERSTVAQTREFLANEARLLEAIASGAEEAARGGKGARETYLRQLEGILQEVEDSLANQTHRLDAARSRRRXXXXXXXXXSEERKRFLVGSKELTQECYRHEALTAHLVLMRR 1313
            MEEEAEQAR+YG KLAQEM+RL RI + L PD+S+SLEKLRRL ATL+E+E+QE+  LE G+A+E ALRAEI EFTG                               E  +  GG   G      A                                  LE + DDPLA                                                  PA  K     A   KK   EGKAL AEGLHRIEAA+E AAAERE  A+RLSRLRLAVARRQREED   GHAELLQYLLRFEELGQH+LER++QLRRCR ERST++ TRE LA +ARLLE IA G EEA++GGKG RE YLRQ++GI++ VEDSL +QT  LD  R RR           E+RKRF  G+KEL+ ECYR+E+L AHL LMRR
Sbjct:    1 MEEEAEQARDYGNKLAQEMARLGRITRTLAPDESASLEKLRRLVATLTEIERQEQAALEQGKAREAALRAEIAEFTG-------------------------------ETTEDVGGGGDGLGEKPAAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVLEKTVDDPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAERK-----ANHRKKPALEGKALFAEGLHRIEAAYEVAAAEREESAARLSRLRLAVARRQREEDVALGHAELLQYLLRFEELGQHSLERQEQLRRCRAERSTLSLTRELLATQARLLETIAGGVEEASKGGKGVREAYLRQIKGIVESVEDSLEDQTRLLDNVRRRRHVAEELQASVREDRKRFFAGTKELSDECYRYESLNAHLALMRR 396
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8928.17018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTA4_9PHAE2.060e-9156.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G045_ECTSI4.220e-8647.69Similar to fidipidine n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8928contigS-dermatodea_contig8928:375..2721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score65.1
Seed ortholog evalue9.4e-08
Seed eggNOG ortholog136037.KDR12439
Preferred namefidipidine
GOsGO:0006810,GO:0006892,GO:0006893,GO:0008150,GO:0016192,GO:0048193,GO:0051179,GO:0051234,GO:0098876
EggNOG free text desc.Coiled-coil domain-containing protein (DUF2037)
EggNOG OGs38GZI@33154,3BARN@33208,3CUTD@33213,3SHNS@50557,41XPN@6656,KOG2701@1,KOG2701@2759
COG Functional cat.S
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsimilar to fidipidine
Ec32 orthologEc-12_007170.1
Exons3
Model size1316
Cds size1314
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8928.17018.1prot_S-dermatodea_contig8928.17018.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8928 377..2721 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.3797452-UTR-S-dermatodea_contig8928:374..3761622925373.3797452-UTR-S-dermatodea_contig8928:374..376Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8928 375..376 +
1694079889.4764812-UTR-S-dermatodea_contig8928:374..3761694079889.4764812-UTR-S-dermatodea_contig8928:374..376Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8928 375..376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.3919592-CDS-S-dermatodea_contig8928:376..5921622925373.3919592-CDS-S-dermatodea_contig8928:376..592Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8928 377..592 +
1694079889.491203-CDS-S-dermatodea_contig8928:376..5921694079889.491203-CDS-S-dermatodea_contig8928:376..592Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8928 377..592 +
1622925373.4022393-CDS-S-dermatodea_contig8928:915..18211622925373.4022393-CDS-S-dermatodea_contig8928:915..1821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8928 916..1821 +
1694079889.502537-CDS-S-dermatodea_contig8928:915..18211694079889.502537-CDS-S-dermatodea_contig8928:915..1821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8928 916..1821 +
1622925373.4120047-CDS-S-dermatodea_contig8928:2529..27211622925373.4120047-CDS-S-dermatodea_contig8928:2529..2721Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8928 2530..2721 +
1694079889.5119624-CDS-S-dermatodea_contig8928:2529..27211694079889.5119624-CDS-S-dermatodea_contig8928:2529..2721Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8928 2530..2721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8928.17018.1

>prot_S-dermatodea_contig8928.17018.1 ID=prot_S-dermatodea_contig8928.17018.1|Name=mRNA_S-dermatodea_contig8928.17018.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=438bp
MQEDASPRDAREADQGNHDAQEVTENIPKKANQEVLDLRARRAELEQRLA
AARSALSSARERREFMEEEAEQAREYGKKLAQEMSRLARIAQALPPDQSS
SLEKLRRLAATLSEVEQQEKGVLEDGQAQEDALRAEIDEFTGRQKGSQPP
PGPDAASASESTSAPAAGRHSEVENAQGRGGAAGGRARSGGATLENSADD
PLAAAEAPDRDRGEGGENGGRRARGDPAGVKRVAVVARAAKKKTPEGKAL
LAEGLHRIEAAHEEAAAEREAVASRLSRLRLAVARRQREEDATPGHAELL
QYLLRFEELGQHALEREKQLRRCRTERSTVAQTREFLANEARLLEAIASG
AEEAARGGKGARETYLRQLEGILQEVEDSLANQTHRLDAARSRRRAAEEN
QQSASEERKRFLVGSKELTQECYRHEALTAHLVLMRR*
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mRNA from alignment at S-dermatodea_contig8928:375..2721+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8928.17018.1 ID=mRNA_S-dermatodea_contig8928.17018.1|Name=mRNA_S-dermatodea_contig8928.17018.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2347bp|location=Sequence derived from alignment at S-dermatodea_contig8928:375..2721+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATGCAAGAAGATGCATCGCCCCGCGATGCGAGGGAAGCAGACCAGGGA
AATCACGACGCGCAAGAGGTGACCGAAAATATCCCCAAGAAGGCGAACCA
GGAGGTGCTAGACCTTCGCGCCCGGAGAGCGGAGCTGGAGCAGCGCTTGG
CCGCTGCCAGGTCCGCCCTTTCGTCGGCGCGAGAACGGCGAGAGTTCATG
GAGGAGGAGGCGGAGCAGGTGATTGCCGCGTCCTTACGTACACTGTGTGT
GTTGGGCGGGGGGGTGGGCGGGGTGGGGGGTTACGTGCGTGCGTGGTGCG
TATAATAGCAAAGAGCTTTGCGTTGCATCCCGCAGACAGTGAAAAGGGAA
ATAAGAAATTATTGATAACGAACGGACTCTCTCTATTTTGCGCTCTTAGC
GTAGCGTGAGGTGCAAAGGTTGAGGTGGGAAACAGCTGCTTGCAGCTGTA
GCTTGTCGCCCAGCGAACAAACAAGCCACCCCTGCACGTACACTACAACC
CACCGTTGTACCGCCTACGGTCTCTCTTCCCCGCGAACCAGGCGAGAGAA
TACGGGAAGAAGCTGGCCCAAGAGATGTCGCGCTTGGCGCGCATCGCCCA
AGCCCTTCCCCCGGACCAGAGCTCCTCTCTCGAAAAACTTCGTCGCCTCG
CGGCAACACTTTCCGAGGTAGAGCAGCAAGAAAAAGGCGTGCTCGAGGAT
GGGCAGGCCCAAGAGGACGCCCTCCGCGCGGAGATCGACGAGTTCACCGG
ACGCCAGAAGGGGAGCCAACCGCCGCCAGGTCCGGACGCTGCATCTGCAT
CTGAATCTACATCTGCACCTGCTGCGGGCCGACACTCGGAGGTCGAGAAC
GCTCAGGGCCGGGGAGGGGCGGCCGGAGGAAGGGCACGGAGCGGAGGAGC
GACGCTGGAGAACAGCGCGGACGACCCGCTAGCAGCAGCAGAAGCGCCCG
ACCGCGACCGCGGGGAAGGCGGGGAGAATGGCGGCCGCAGAGCACGAGGC
GACCCGGCGGGGGTGAAGAGGGTGGCGGTCGTGGCGCGCGCCGCCAAGAA
GAAGACGCCGGAAGGGAAGGCGCTGCTGGCCGAGGGCTTGCATCGGATCG
AGGCCGCGCACGAGGAGGCGGCGGCGGAGAGGGAGGCGGTGGCCTCGCGT
CTCTCGCGATTGAGGCTTGCCGTAGCCAGGCGGCAGAGGGAGGAAGACGC
CACTCCCGGACACGCGGAGCTGCTGCAGTACTTGCTGCGGTTCGAGGAGC
TGGGGCAGCACGCACTAGAGAGGGAGAAGCAGCTGAGGAGATGCCGGACG
GAGCGGTCAACGGTGGCGCAAACAAGAGAGTTCCTGGCGAATGAGGCGAG
ACTCCTGGAGGCGATCGCCAGTGGGGCGGAAGAGGCCGCGAGGGGGGGAA
AGGGGGCCAGGGAGACGTACCTGCGGCAGCTCGAGGGAATCTTGCAGGTG
GGATTACAGGTGTTGATACGGCGTGCCGGTAACTATAGTGTGGGTGGTAA
TGGTGTCGCCGCTGTGCGTATGCTTTGCTTCTTTTGTGGCTGGCTGTTTG
GGGTGGTGGCTGTGCTTTGAAGGTTCTCTTGTCGCTGTTTGGGGGCTTAG
GGAATGCTCTCCGCCGACGTGGGAGGTGTGTCTTTCGCCGATGGCGAAGG
GCCAACTCGAGCCTTTTTCATATTTGGGTTGACCGAGCCAGATTTGCAAG
ATTATTCGAATGGCGGCGAACGCACACTCACACCTGCACTTGTCCATTTT
TCTCCCCAATTGTGGTGTAGAGACCCAAGGCGCGCGAGCCCTTTCGCCTT
TAACAATGTATTGGGTGTGTGTGTATTGGGTGTGTGTGTTCGCGTGGAGT
GCGCTTTTGAAGCATAACACATGAGGTGTCACAACACGGACATTCCGCCA
TCGCAAACAAGCGCAGAATGCCTCCCGCGATCCTCATGACTGAAAAAGTG
CATCAGCGTACCGCACACGGTCGGGCAAAAATGTTTTCCTGTTTGTGAGC
GGTGTAACGCGTGTGGGATTCGGGGCGTTTTCGCCCCAAAATCCGCCGGC
TTGGGCGATGCCCTTTTCAACACACATAGCCCGCTGTCATCCCGCTGTCA
TCCCAACTTTACTAATCGCGGTATACCCCCGGAACGCATACATTCTGCTC
GACAGGAAGTGGAGGATTCATTGGCGAATCAGACGCACCGGCTGGACGCC
GCTCGCAGCCGAAGGCGAGCAGCGGAAGAAAATCAGCAATCGGCAAGCGA
AGAGAGGAAGCGCTTCCTCGTAGGGTCAAAAGAATTGACTCAGGAGTGCT
ATCGCCACGAGGCGCTGACGGCGCACCTCGTGCTCATGCGTCGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8928:375..2721+

>mRNA_S-dermatodea_contig8928.17018.1 ID=mRNA_S-dermatodea_contig8928.17018.1|Name=mRNA_S-dermatodea_contig8928.17018.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2628bp|location=Sequence derived from alignment at S-dermatodea_contig8928:375..2721+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAAGAAGATGCATCGCCCCGCGATGCGAGGGAAGCAGACCAGGGAAA
TCACGACGCGCAAGAGGTGACCGAAAATATCCCCAAGAAGGCGAACCAGG
AGGTGCTAGACCTTCGCGCCCGGAGAGCGGAGCTGGAGCAGCGCTTGGCC
GCTGCCAGGTCCGCCCTTTCGTCGGCGCGAGAACGGCGAGAGTTCATGGA
GGAGGAGGCGGAGCAGATGCAAGAAGATGCATCGCCCCGCGATGCGAGGG
AAGCAGACCAGGGAAATCACGACGCGCAAGAGGTGACCGAAAATATCCCC
AAGAAGGCGAACCAGGAGGTGCTAGACCTTCGCGCCCGGAGAGCGGAGCT
GGAGCAGCGCTTGGCCGCTGCCAGGTCCGCCCTTTCGTCGGCGCGAGAAC
GGCGAGAGTTCATGGAGGAGGAGGCGGAGCAGGCGAGAGAATACGGGAAG
AAGCTGGCCCAAGAGATGTCGCGCTTGGCGCGCATCGCCCAAGCCCTTCC
CCCGGACCAGAGCTCCTCTCTCGAAAAACTTCGTCGCCTCGCGGCAACAC
TTTCCGAGGTAGAGCAGCAAGAAAAAGGCGTGCTCGAGGATGGGCAGGCC
CAAGAGGACGCCCTCCGCGCGGAGATCGACGAGTTCACCGGACGCCAGAA
GGGGAGCCAACCGCCGCCAGGTCCGGACGCTGCATCTGCATCTGAATCTA
CATCTGCACCTGCTGCGGGCCGACACTCGGAGGTCGAGAACGCTCAGGGC
CGGGGAGGGGCGGCCGGAGGAAGGGCACGGAGCGGAGGAGCGACGCTGGA
GAACAGCGCGGACGACCCGCTAGCAGCAGCAGAAGCGCCCGACCGCGACC
GCGGGGAAGGCGGGGAGAATGGCGGCCGCAGAGCACGAGGCGACCCGGCG
GGGGTGAAGAGGGTGGCGGTCGTGGCGCGCGCCGCCAAGAAGAAGACGCC
GGAAGGGAAGGCGCTGCTGGCCGAGGGCTTGCATCGGATCGAGGCCGCGC
ACGAGGAGGCGGCGGCGGAGAGGGAGGCGGTGGCCTCGCGTCTCTCGCGA
TTGAGGCTTGCCGTAGCCAGGCGGCAGAGGGAGGAAGACGCCACTCCCGG
ACACGCGGAGCTGCTGCAGTACTTGCTGCGGTTCGAGGAGCTGGGGCAGC
ACGCACTAGAGAGGGAGAAGCAGCTGAGGAGATGCCGGACGGAGCGGTCA
ACGGTGGCGCAAACAAGAGAGTTCCTGGCGAATGAGGCGAGACTCCTGGA
GGCGATCGCCAGTGGGGCGGAAGAGGCCGCGAGGGGGGGAAAGGGGGCCA
GGGAGACGTACCTGCGGCAGCTCGAGGGAATCTTGCAGGCGAGAGAATAC
GGGAAGAAGCTGGCCCAAGAGATGTCGCGCTTGGCGCGCATCGCCCAAGC
CCTTCCCCCGGACCAGAGCTCCTCTCTCGAAAAACTTCGTCGCCTCGCGG
CAACACTTTCCGAGGTAGAGCAGCAAGAAAAAGGCGTGCTCGAGGATGGG
CAGGCCCAAGAGGACGCCCTCCGCGCGGAGATCGACGAGTTCACCGGACG
CCAGAAGGGGAGCCAACCGCCGCCAGGTCCGGACGCTGCATCTGCATCTG
AATCTACATCTGCACCTGCTGCGGGCCGACACTCGGAGGTCGAGAACGCT
CAGGGCCGGGGAGGGGCGGCCGGAGGAAGGGCACGGAGCGGAGGAGCGAC
GCTGGAGAACAGCGCGGACGACCCGCTAGCAGCAGCAGAAGCGCCCGACC
GCGACCGCGGGGAAGGCGGGGAGAATGGCGGCCGCAGAGCACGAGGCGAC
CCGGCGGGGGTGAAGAGGGTGGCGGTCGTGGCGCGCGCCGCCAAGAAGAA
GACGCCGGAAGGGAAGGCGCTGCTGGCCGAGGGCTTGCATCGGATCGAGG
CCGCGCACGAGGAGGCGGCGGCGGAGAGGGAGGCGGTGGCCTCGCGTCTC
TCGCGATTGAGGCTTGCCGTAGCCAGGCGGCAGAGGGAGGAAGACGCCAC
TCCCGGACACGCGGAGCTGCTGCAGTACTTGCTGCGGTTCGAGGAGCTGG
GGCAGCACGCACTAGAGAGGGAGAAGCAGCTGAGGAGATGCCGGACGGAG
CGGTCAACGGTGGCGCAAACAAGAGAGTTCCTGGCGAATGAGGCGAGACT
CCTGGAGGCGATCGCCAGTGGGGCGGAAGAGGCCGCGAGGGGGGGAAAGG
GGGCCAGGGAGACGTACCTGCGGCAGCTCGAGGGAATCTTGCAGGAAGTG
GAGGATTCATTGGCGAATCAGACGCACCGGCTGGACGCCGCTCGCAGCCG
AAGGCGAGCAGCGGAAGAAAATCAGCAATCGGCAAGCGAAGAGAGGAAGC
GCTTCCTCGTAGGGTCAAAAGAATTGACTCAGGAGTGCTATCGCCACGAG
GCGCTGACGGCGCACCTCGTGCTCATGCGTCGGTAGGAAGTGGAGGATTC
ATTGGCGAATCAGACGCACCGGCTGGACGCCGCTCGCAGCCGAAGGCGAG
CAGCGGAAGAAAATCAGCAATCGGCAAGCGAAGAGAGGAAGCGCTTCCTC
GTAGGGTCAAAAGAATTGACTCAGGAGTGCTATCGCCACGAGGCGCTGAC
GGCGCACCTCGTGCTCATGCGTCGGTAG
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