mRNA_S-dermatodea_contig8913.17009.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: D7G7I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I2_ECTSI) HSP 1 Score: 133 bits (335), Expect = 2.210e-34 Identity = 67/107 (62.62%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 7 YRRIACLKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGDD---------------GDE------AVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ 264
YRRIA LKGHSSRV HLDWTEDGRFVHTCGQDY +LHW+ILPP GDD GDE A + RPR+F+RAFL+R+ WATWSSTIGWPVQ
Sbjct: 1478 YRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDILPPSSHRQGDDAVRDGGAGRDACNGGGDEEDDEAFAGESRPRIFKRAFLVRNEPWATWSSTIGWPVQ 1584
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: A0A6H5JER7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER7_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.860e-33 Identity = 66/107 (61.68%), Postives = 73/107 (68.22%), Query Frame = 1
Query: 7 YRRIACLKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGD----DGDE-----------------AVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ 264
YRRIA LKGHSSRV HLDWTEDGRFVHTCGQDY +LHW+ILPP GD DG E A + RPR+F+RAFL+R+ WATWSSTIGWPVQ
Sbjct: 614 YRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDILPPSSHRQGDGAARDGGEDRDASNGXXXXXXDEAFAGESRPRIFKRAFLVRNEPWATWSSTIGWPVQ 720
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: G0QVG1_ICHMG (EF-hand domain-containing protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QVG1_ICHMG) HSP 1 Score: 61.6 bits (148), Expect = 4.230e-9 Identity = 27/80 (33.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 25 LKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGDDGDEAVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ 264
+K HSS + H+D++ DG ++H+ Q Y++L W+ V+ ++ A L+D WATW++T+GWPVQ
Sbjct: 1989 MKKHSSAITHIDFSRDGNYIHSTCQAYELLFWD----------------VNIGKQLTSGASHLKDEMWATWTATLGWPVQ 2052
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: A0A835YP67_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP67_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 2.000e-8 Identity = 30/87 (34.48%), Postives = 48/87 (55.17%), Query Frame = 1
Query: 7 YRRIACLKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGDDGDEAVDFR-PRMFQRAFLLRDVQWATWSSTIGWPVQ 264
YRR +GH+S + +D++ DG ++ + ++L+W D EAV + P AF LRD +W+TW+ST+GWPV+
Sbjct: 1443 YRRAGVCRGHTSEICSVDFSSDGHWLQSSDASKELLYWHGPHASKLRD-----EAVWYMGPNAVSHAFELRDEEWSTWTSTLGWPVR 1524
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: A0A7R9W6B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6B9_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 1.410e-7 Identity = 29/82 (35.37%), Postives = 43/82 (52.44%), Query Frame = 1
Query: 19 ACLKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGDDGDEAVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ 264
A GHSS + H+D+T D +F+ + Y++L W D + G++ A LRD +WATW+ T+GWPVQ
Sbjct: 70 ATCSGHSSYITHIDFTADSKFLQSNCGAYELLFW---------DAETGEQDPS-------GATNLRDAEWATWTCTLGWPVQ 135
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: A0A0V0QU31_PSEPJ (WD40-repeat-containing domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QU31_PSEPJ) HSP 1 Score: 55.8 bits (133), Expect = 4.580e-7 Identity = 26/80 (32.50%), Postives = 42/80 (52.50%), Query Frame = 1
Query: 25 LKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGDDGDEAVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ 264
L H S + H+D++ D ++H+ DY++L W++ + F P A RD +WATW++T+GWPVQ
Sbjct: 2271 LYKHHSYITHIDFSTDSSYLHSTSGDYELLFWDL-------------DTKKFNP---SGASATRDEEWATWNTTLGWPVQ 2334
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: G0QST4_ICHMG (HELP domain-containing protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QST4_ICHMG) HSP 1 Score: 54.3 bits (129), Expect = 1.550e-6 Identity = 26/84 (30.95%), Postives = 46/84 (54.76%), Query Frame = 1
Query: 13 RIACLKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGDDGDEAVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ 264
++ L+ HSS + H+D+++DG +H+ Y++L+W I + ++ A LR+ WATW++T+GWPVQ
Sbjct: 712 KVKPLRKHSSYITHIDFSQDGNVLHSNCGAYELLYWNI----------------NQAKQITSGATSLRNEFWATWTATLGWPVQ 779 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8913.17009.1 >prot_S-dermatodea_contig8913.17009.1 ID=prot_S-dermatodea_contig8913.17009.1|Name=mRNA_S-dermatodea_contig8913.17009.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp MCYRRIACLKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDback to top mRNA from alignment at S-dermatodea_contig8913:1722..1985+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8913.17009.1 ID=mRNA_S-dermatodea_contig8913.17009.1|Name=mRNA_S-dermatodea_contig8913.17009.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig8913:1722..1985+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8913:1722..1985+ >mRNA_S-dermatodea_contig8913.17009.1 ID=mRNA_S-dermatodea_contig8913.17009.1|Name=mRNA_S-dermatodea_contig8913.17009.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig8913:1722..1985+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |