mRNA_S-dermatodea_contig8913.17009.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8913.17009.1
Unique NamemRNA_S-dermatodea_contig8913.17009.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: D7G7I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I2_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.210e-34
Identity = 67/107 (62.62%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    7 YRRIACLKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGDD---------------GDE------AVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ 264
            YRRIA LKGHSSRV HLDWTEDGRFVHTCGQDY +LHW+ILPP     GDD               GDE      A + RPR+F+RAFL+R+  WATWSSTIGWPVQ
Sbjct: 1478 YRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDILPPSSHRQGDDAVRDGGAGRDACNGGGDEEDDEAFAGESRPRIFKRAFLVRNEPWATWSSTIGWPVQ 1584          
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: A0A6H5JER7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER7_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.860e-33
Identity = 66/107 (61.68%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    7 YRRIACLKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGD----DGDE-----------------AVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ 264
            YRRIA LKGHSSRV HLDWTEDGRFVHTCGQDY +LHW+ILPP     GD    DG E                 A + RPR+F+RAFL+R+  WATWSSTIGWPVQ
Sbjct:  614 YRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDILPPSSHRQGDGAARDGGEDRDASNGXXXXXXDEAFAGESRPRIFKRAFLVRNEPWATWSSTIGWPVQ 720          
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: G0QVG1_ICHMG (EF-hand domain-containing protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QVG1_ICHMG)

HSP 1 Score: 61.6 bits (148), Expect = 4.230e-9
Identity = 27/80 (33.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   25 LKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGDDGDEAVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ 264
            +K HSS + H+D++ DG ++H+  Q Y++L W+                V+   ++   A  L+D  WATW++T+GWPVQ
Sbjct: 1989 MKKHSSAITHIDFSRDGNYIHSTCQAYELLFWD----------------VNIGKQLTSGASHLKDEMWATWTATLGWPVQ 2052          
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: A0A835YP67_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP67_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.000e-8
Identity = 30/87 (34.48%), Postives = 48/87 (55.17%), Query Frame = 1
Query:    7 YRRIACLKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGDDGDEAVDFR-PRMFQRAFLLRDVQWATWSSTIGWPVQ 264
            YRR    +GH+S +  +D++ DG ++ +     ++L+W         D     EAV +  P     AF LRD +W+TW+ST+GWPV+
Sbjct: 1443 YRRAGVCRGHTSEICSVDFSSDGHWLQSSDASKELLYWHGPHASKLRD-----EAVWYMGPNAVSHAFELRDEEWSTWTSTLGWPVR 1524          
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: A0A7R9W6B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6B9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.410e-7
Identity = 29/82 (35.37%), Postives = 43/82 (52.44%), Query Frame = 1
Query:   19 ACLKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGDDGDEAVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ 264
            A   GHSS + H+D+T D +F+ +    Y++L W         D + G++           A  LRD +WATW+ T+GWPVQ
Sbjct:   70 ATCSGHSSYITHIDFTADSKFLQSNCGAYELLFW---------DAETGEQDPS-------GATNLRDAEWATWTCTLGWPVQ 135          
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: A0A0V0QU31_PSEPJ (WD40-repeat-containing domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QU31_PSEPJ)

HSP 1 Score: 55.8 bits (133), Expect = 4.580e-7
Identity = 26/80 (32.50%), Postives = 42/80 (52.50%), Query Frame = 1
Query:   25 LKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGDDGDEAVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ 264
            L  H S + H+D++ D  ++H+   DY++L W++             +   F P     A   RD +WATW++T+GWPVQ
Sbjct: 2271 LYKHHSYITHIDFSTDSSYLHSTSGDYELLFWDL-------------DTKKFNP---SGASATRDEEWATWNTTLGWPVQ 2334          
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Match: G0QST4_ICHMG (HELP domain-containing protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QST4_ICHMG)

HSP 1 Score: 54.3 bits (129), Expect = 1.550e-6
Identity = 26/84 (30.95%), Postives = 46/84 (54.76%), Query Frame = 1
Query:   13 RIACLKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQEDGDDGDEAVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ 264
            ++  L+ HSS + H+D+++DG  +H+    Y++L+W I                +   ++   A  LR+  WATW++T+GWPVQ
Sbjct:  712 KVKPLRKHSSYITHIDFSQDGNVLHSNCGAYELLYWNI----------------NQAKQITSGATSLRNEFWATWTATLGWPVQ 779          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8913.17009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G7I2_ECTSI2.210e-3462.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JER7_9PHAE1.860e-3361.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
G0QVG1_ICHMG4.230e-933.75EF-hand domain-containing protein n=1 Tax=Ichthyop... [more]
A0A835YP67_9STRA2.000e-834.48SH3 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7R9W6B9_9STRA1.410e-735.37Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A0V0QU31_PSEPJ4.580e-732.50WD40-repeat-containing domain n=1 Tax=Pseudocohnil... [more]
G0QST4_ICHMG1.550e-630.95HELP domain-containing protein n=1 Tax=Ichthyophth... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8913contigS-dermatodea_contig8913:1722..1985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1.3e-30
Seed eggNOG ortholog2880.D7G7I2
KEGG koko:K18598
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925372.9046416-CDS-S-dermatodea_contig8913:1721..19851622925372.9046416-CDS-S-dermatodea_contig8913:1721..1985Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8913 1722..1985 +
1694079889.189339-CDS-S-dermatodea_contig8913:1721..19851694079889.189339-CDS-S-dermatodea_contig8913:1721..1985Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8913 1722..1985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8913.17009.1prot_S-dermatodea_contig8913.17009.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8913 1722..1985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8913.17009.1

>prot_S-dermatodea_contig8913.17009.1 ID=prot_S-dermatodea_contig8913.17009.1|Name=mRNA_S-dermatodea_contig8913.17009.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
MCYRRIACLKGHSSRVHHLDWTEDGRFVHTCGQDYQVLHWEILPPPPQED
GDDGDEAVDFRPRMFQRAFLLRDVQWATWSSTIGWPVQ
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mRNA from alignment at S-dermatodea_contig8913:1722..1985+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8913.17009.1 ID=mRNA_S-dermatodea_contig8913.17009.1|Name=mRNA_S-dermatodea_contig8913.17009.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig8913:1722..1985+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCTACCGGCGAATAGCTTGCCTGAAGGGACACTCTTCTCGAGTTCA CCACCTGGACTGGACGGAGGACGGTCGCTTTGTGCACACCTGCGGTCAAG ACTATCAGGTCTTGCACTGGGAAATTCTGCCGCCTCCTCCCCAAGAAGAC GGCGATGACGGGGATGAGGCGGTTGACTTTAGGCCTCGAATGTTCCAGCG AGCGTTCCTGCTGCGGGACGTGCAGTGGGCGACCTGGTCCAGCACTATCG GCTGGCCGGTACAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8913:1722..1985+

>mRNA_S-dermatodea_contig8913.17009.1 ID=mRNA_S-dermatodea_contig8913.17009.1|Name=mRNA_S-dermatodea_contig8913.17009.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig8913:1722..1985+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCTACCGGCGAATAGCTTGCCTGAAGGGACACTCTTCTCGAGTTCA
CCACCTGGACTGGACGGAGGACGGTCGCTTTGTGCACACCTGCGGTCAAG
ACTATCAGGTCTTGCACTGGGAAATTCTGCCGCCTCCTCCCCAAGAAGAC
GGCGATGACGGGGATGAGGCGGTTGACTTTAGGCCTCGAATGTTCCAGCG
AGCGTTCCTGCTGCGGGACGTGCAGTGGGCGACCTGGTCCAGCACTATCG
GCTGGCCGGTACAGATGTGCTACCGGCGAATAGCTTGCCTGAAGGGACAC
TCTTCTCGAGTTCACCACCTGGACTGGACGGAGGACGGTCGCTTTGTGCA
CACCTGCGGTCAAGACTATCAGGTCTTGCACTGGGAAATTCTGCCGCCTC
CTCCCCAAGAAGACGGCGATGACGGGGATGAGGCGGTTGACTTTAGGCCT
CGAATGTTCCAGCGAGCGTTCCTGCTGCGGGACGTGCAGTGGGCGACCTG
GTCCAGCACTATCGGCTGGCCGGTACAG
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