mRNA_S-dermatodea_contig8905.17002.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8905.17002.1
Unique NamemRNA_S-dermatodea_contig8905.17002.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8905.17002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8905contigS-dermatodea_contig8905:7267..8287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925372.4348052-CDS-S-dermatodea_contig8905:7266..73651622925372.4348052-CDS-S-dermatodea_contig8905:7266..7365Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8905 7267..7365 -
1694079888.9142163-CDS-S-dermatodea_contig8905:7266..73651694079888.9142163-CDS-S-dermatodea_contig8905:7266..7365Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8905 7267..7365 -
1622925372.4486794-CDS-S-dermatodea_contig8905:8083..82871622925372.4486794-CDS-S-dermatodea_contig8905:8083..8287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8905 8084..8287 -
1694079888.9293878-CDS-S-dermatodea_contig8905:8083..82871694079888.9293878-CDS-S-dermatodea_contig8905:8083..8287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8905 8084..8287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8905.17002.1prot_S-dermatodea_contig8905.17002.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8905 7267..8287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8905.17002.1

>prot_S-dermatodea_contig8905.17002.1 ID=prot_S-dermatodea_contig8905.17002.1|Name=mRNA_S-dermatodea_contig8905.17002.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
QDFDGAEEHYRKAISLHWRSPDAHYNLGCLLQHQKDNIAEAEKQYRHAIK
CDPKHGLAQYNLGWVLEKVKEDLAGAEKCYRAAIEADPEDKDASRRLAKV
I
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mRNA from alignment at S-dermatodea_contig8905:7267..8287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8905.17002.1 ID=mRNA_S-dermatodea_contig8905.17002.1|Name=mRNA_S-dermatodea_contig8905.17002.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1021bp|location=Sequence derived from alignment at S-dermatodea_contig8905:7267..8287- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGACTTTGATGGCGCAGAGGAGCATTACCGCAAGGCTATCAGTCTCCA
CTGGCGCTCGCCCGACGCGCACTACAACCTCGGCTGCCTGCTGCAGCACC
AGAAGGACAACATCGCGGAGGCGGAGAAGCAGTACCGTCACGCCATCAAG
TGCGACCCCAAGCACGGTTTGGCCCAGTACAACCTCGGCTGGGTGCTCGA
GAAGGTGAGGACCCGGGAGGATCGCGCGCGCAGCCGACAGGACCGTTGAA
GCGCTGCGGGTGTTCCACTCGAGTAATGCAAAGATATGGGAGGGGGGGGT
ACGTACGGGTTGTCGTTCGGCCAGCCACAATAACAAAGTTAACCCTTTTG
GGACTAAGGCTGTTTTCGGGTAACTGTTTGCTATTATTATACCCCCTTTT
GTTTTGTGACTAAGGCTGTTTTCGGGTAACTGTTTGCTATTGTGATGACA
GCCAACAGTTACCCGAAAACAGGCTTCGTCCCAAGGCTTAGTTCCAAAAG
AGTAGCTTATAAGAGCAAACAGTTGCCCGAAAACAGCCTTAGTCCCAAGA
GGGTTATTAATGTCGAAATCCTGAACGTATTGGTTACCCTGGTAAACTCG
GAACTGAATATGGGATGGACTGGCCAATATGGCGCGACCACAGCAAAACG
GGAAGAAAAGCAAAACGCTTTCTGACTCATGCGCGACAGGAAAAAGACGA
TTTTCTTACCCCCTCCTTATCTTTGGATTTTTTCTCACTCGAAAGAACGC
AAGCCGTCTATTATGAAGTATCTGCGTTCATAACGTGGCCTTCGTCCCGC
ATTTACCCCCAAGCGGGCGGCAGATAAATGAATGAGAAACGCATCCCACG
CTCTTCCACTTGCCGTGCTTCGCGGCCACGGCCACGGCCACGGCCCCTTC
CCCCCGAACCCAATCCCGACAGGTAAAGGAAGACTTGGCCGGGGCAGAAA
AGTGCTATCGCGCAGCCATAGAGGCCGACCCGGAGGACAAGGATGCCAGC
CGGCGCCTAGCCAAGGTGATT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8905:7267..8287-

>mRNA_S-dermatodea_contig8905.17002.1 ID=mRNA_S-dermatodea_contig8905.17002.1|Name=mRNA_S-dermatodea_contig8905.17002.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig8905:7267..8287- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGACTTTGATGGCGCAGAGGAGCATTACCGCAAGGCTATCAGTCTCCA
CTGGCGCTCGCCCGACGCGCACTACAACCTCGGCTGCCTGCTGCAGCACC
AGAAGGACAACATCGCGGAGGCGGAGAAGCAGTACCGTCACGCCATCAAG
TGCGACCCCAAGCACGGTTTGGCCCAGTACAACCTCGGCTGGGTGCTCGA
GAAGCAGGACTTTGATGGCGCAGAGGAGCATTACCGCAAGGCTATCAGTC
TCCACTGGCGCTCGCCCGACGCGCACTACAACCTCGGCTGCCTGCTGCAG
CACCAGAAGGACAACATCGCGGAGGCGGAGAAGCAGTACCGTCACGCCAT
CAAGTGCGACCCCAAGCACGGTTTGGCCCAGTACAACCTCGGCTGGGTGC
TCGAGAAGGTAAAGGAAGACTTGGCCGGGGCAGAAAAGTGCTATCGCGCA
GCCATAGAGGCCGACCCGGAGGACAAGGATGCCAGCCGGCGCCTAGCCAA
GGTGATTGTAAAGGAAGACTTGGCCGGGGCAGAAAAGTGCTATCGCGCAG
CCATAGAGGCCGACCCGGAGGACAAGGATGCCAGCCGGCGCCTAGCCAAG
GTGATT
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