mRNA_S-dermatodea_contig88709.16985.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig88709.16985.1
Unique NamemRNA_S-dermatodea_contig88709.16985.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig88709.16985.1 vs. uniprot
Match: A0A6H5JPT0_9PHAE (Decapping nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT0_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.920e-18
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 WDKDVCLNFTDRCLSFLKDNVDEGPRYSFKYLDPFDELVLELIG 132
            WDKDVCLNF DRCLSFLKDNVDEG RYSFKYL+PFD L LE + 
Sbjct:  239 WDKDVCLNFADRCLSFLKDNVDEGLRYSFKYLEPFDHLTLEQLA 282
[Close]
BLAST of mRNA_S-dermatodea_contig88709.16985.1 vs. uniprot
Match: D8LT56_ECTSI (Decapping nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT56_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.060e-17
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 WDKDVCLNFTDRCLSFLKDNVDEGPRYSFKYLDPFDELVLELIG 132
            WDKDVCLNF DRCLSFLKDNVDEG RYSFKYL+PFD L LE + 
Sbjct:  363 WDKDVCLNFADRCLSFLKDNVDEGLRYSFKYLEPFDHLTLEQLA 406
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig88709.16985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPT0_9PHAE4.920e-1881.82Decapping nuclease n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D8LT56_ECTSI1.060e-1781.82Decapping nuclease n=1 Tax=Ectocarpus siliculosus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig88709contigS-dermatodea_contig88709:169..300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue1.5e-14
Seed eggNOG ortholog2880.D8LT56
Preferred nameRAI1
KEGG koko:K14845,ko:K18404
GOsGO:0000166,GO:0000291,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016891,GO:0016893,GO:0017076,GO:0018130,GO:0019001,GO:0019003,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0030234,GO:0030846,GO:0031086,GO:0031087,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032774,GO:0032991,GO:0034353,GO:0034428,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0036094,GO:0042254,GO:0042273,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050790,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071025,GO:0071027,GO:0071029,GO:0071035,GO:0071046,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090730,GO:0097159,GO:0097367,GO:0097659,GO:0098772,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902555,GO:1902911,GO:1905348,GO:1905354,GO:1990174,GO:1990234
EggNOG free text desc.decapping
EggNOG OGsKOG1982@1,KOG1982@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03019,ko03021,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925371.185812-CDS-S-dermatodea_contig88709:168..3001622925371.185812-CDS-S-dermatodea_contig88709:168..300Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88709 169..300 -
1694079888.018327-CDS-S-dermatodea_contig88709:168..3001694079888.018327-CDS-S-dermatodea_contig88709:168..300Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88709 169..300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig88709.16985.1prot_S-dermatodea_contig88709.16985.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig88709 169..300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig88709.16985.1

>prot_S-dermatodea_contig88709.16985.1 ID=prot_S-dermatodea_contig88709.16985.1|Name=mRNA_S-dermatodea_contig88709.16985.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
WDKDVCLNFTDRCLSFLKDNVDEGPRYSFKYLDPFDELVLELIG
back to top

mRNA from alignment at S-dermatodea_contig88709:169..300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig88709.16985.1 ID=mRNA_S-dermatodea_contig88709.16985.1|Name=mRNA_S-dermatodea_contig88709.16985.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at S-dermatodea_contig88709:169..300- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGGACAAGGATGTCTGCCTCAACTTCACGGACCGCTGCCTTTCGTTCCT
CAAGGACAACGTCGACGAGGGCCCGCGGTACAGCTTTAAGTATCTCGACC
CCTTCGACGAGCTCGTCCTGGAGCTGATCGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig88709:169..300-

>mRNA_S-dermatodea_contig88709.16985.1 ID=mRNA_S-dermatodea_contig88709.16985.1|Name=mRNA_S-dermatodea_contig88709.16985.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig88709:169..300- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGGACAAGGATGTCTGCCTCAACTTCACGGACCGCTGCCTTTCGTTCCT
CAAGGACAACGTCGACGAGGGCCCGCGGTACAGCTTTAAGTATCTCGACC
CCTTCGACGAGCTCGTCCTGGAGCTGATCGGGTGGGACAAGGATGTCTGC
CTCAACTTCACGGACCGCTGCCTTTCGTTCCTCAAGGACAACGTCGACGA
GGGCCCGCGGTACAGCTTTAAGTATCTCGACCCCTTCGACGAGCTCGTCC
TGGAGCTGATCGGG
back to top