mRNA_S-dermatodea_contig8829.16956.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8829.16956.1
Unique NamemRNA_S-dermatodea_contig8829.16956.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8829.16956.1 vs. uniprot
Match: D7FYP3_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP3_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 5.780e-69
Identity = 145/284 (51.06%), Postives = 171/284 (60.21%), Query Frame = 1 
Query:    1 RVIVGNTHLYFHPNAAHIRLMQLVALTDRISRIREDLIARGLRPVVVLGGDLNSVPRGPVRYLLREVIGPESELWSNVETFQWGDRLFDEVASPKAKTPGSEGQKNGGEKPENGDGATPSPAAIKSNNAVDDLPNLSAG----SAPGRPLCP-PALPGVPYMRLQLGLELASGMPAFTNFTPGFTETLDYVFIEGGAGGEGRXXXXXXXXXXXXXXXXXXXALLAVERAP------------------APVPEEGTLRAITPGLPCEAFPSDHISLVVDLAFSA 783
            R+IV NTHLYFHPNAAHIRLMQLV L +RISR+R+DL+ARGLRP V+LGGDLNS P GPVRYL+ ++IGP+S+LW N+ TF+WGDR FDE+ +                     D    S A+ + NNA ++  N +A     S  G    P P LP VPY+R    L+LASG PAFTNFTP FT+TLDYVFIEG     G                    A+LAVE A                   AP+PEEG LRA TPGLP E FPSDH+SLVVDLA SA
Sbjct:  450 RLIVANTHLYFHPNAAHIRLMQLVTLVERISRVRKDLLARGLRPAVILGGDLNSPPDGPVRYLMGDLIGPDSDLWENMGTFKWGDRFFDELPTTSGXXXXXXXXXXXXXXSRIPDEKA-STASPRPNNATNNNDNETARASHPSVAGSKAKPSPFLPNVPYLRTPFDLQLASGTPAFTNFTPDFTDTLDYVFIEGAGADSGTPTTAAE-------------AVLAVEGAXXXXXXXXXXXXXXXXXXVAPMPEEGPLRATTPGLPSETFPSDHVSLVVDLALSA 719
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BLAST of mRNA_S-dermatodea_contig8829.16956.1 vs. uniprot
Match: A0A6H5JRV9_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV9_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.180e-53
Identity = 113/202 (55.94%), Postives = 132/202 (65.35%), Query Frame = 1 
Query:    1 RVIVGNTHLYFHPNAAHIRLMQLVALTDRISRIREDLIARGLRPVVVLGGDLNSVPRGPVRYLLREVIGPESELWSNVETFQWGDRLFDEVASPKAKTPGSEGQKNGGEKPEN----GDGATPSPAAIKS-NNAVDDLPNLSAGSAPGRPLCP-PALPGVPYMRLQLGLELASGMPAFTNFTPGFTETLDYVFIEGGAGGEG 588
            RVIV NTHLYFHPNAAHIRLMQLV L +RISR+R+DL+ARGLRP VVLGGDLNS P GPVRYL+ ++IGP+S+LW NV TF+WGDR FDE+ +                 P +    G  +T SP    + NN  ++    S  S  G    P P L  VP +R  L L+LASG PAFTNFTP FTETLDYVFIEG     G
Sbjct:  620 RVIVANTHLYFHPNAAHIRLMQLVTLVERISRVRKDLLARGLRPAVVLGGDLNSTPGGPVRYLMGDLIGPDSDLWENVGTFKWGDRFFDELPTTSGAXXXXXXXXXXXXSPTSRIPDGKASTASPRPNNATNNNDNETTRASHHSVAGSKAKPSPFLRNVPCLRTPLDLQLASGTPAFTNFTPEFTETLDYVFIEGAGADNG 821
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BLAST of mRNA_S-dermatodea_contig8829.16956.1 vs. uniprot
Match: A0A836CIF3_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.830e-30
Identity = 95/284 (33.45%), Postives = 129/284 (45.42%), Query Frame = 1 
Query:    1 RVIVGNTHLYFHPNAAHIRLMQLVALTDRISRIREDLIARGLRPVVVLGGDLNSVPRGPVRYLLREVIGPESELWSNVETFQWGDRLFDEVASPKAKTPGSEGQKNGGEKPENGDGATPSPAAIKSNNAVDDLPNLSAGSAP-----------GRPLCPPALPGVPYMRLQLGLELASGMPAFTNFTPGFTETLDYVFIEGGAGGEGRXXXXXXXXXXXXXXXXXXXALLAVERAPAPVPEEGTLRAITPGLPCEAFPSDHISLVVDLAFSA*CGGGRRAEALP 819
            R+IV NTHL+FHPNAAHIRL+Q+VAL + +  IRE L++ G    VV+ GD+NS P   +RYL  + +  E  +W +V  F+WG+R F    S KAK    +G  +                                               G P+       +P + L L L  ASG P +TNFTP FT+TLDY+F +                           +  AV  AP  VP E  LRAIT GLP   +PSDH+++V D+ +     G + A   P
Sbjct:  533 RIIVANTHLFFHPNAAHIRLIQMVALMNAVQGIRERLLSEGQEVGVVVCGDMNSTPLTAIRYLEGDTLSAEHAVWRHVRAFRWGERYF---KSAKAKVAAEDGSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGPVS-----AIPTVALPLPLTNASGYPPYTNFTPAFTDTLDYIFAD-------------------------TDSFEAVSSAP--VPPEAELRAITVGLPYRGYPSDHVAVVADIRYRNPWEGDQDAPPPP 781
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BLAST of mRNA_S-dermatodea_contig8829.16956.1 vs. uniprot
Match: W7T5B9_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T5B9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.160e-21
Identity = 76/212 (35.85%), Postives = 109/212 (51.42%), Query Frame = 1 
Query:    4 VIVGNTHLYFHPNAAHIRLMQLVALTDRISRIREDLIAR-GLRPVVVLGGDLNSVPR-GPVRYLLREVIGPESELWSNVETFQWGDRLFD-------EVASPKAKTPGSEGQKNGGEKPENGDGATPSPAAIKSNNAVDDLPNLSAGSAP-------------GRPLCPPALPG--VPYMRLQLGLELASGMPAFTNFTPGFTETLDYVFIE 567
            ++VGNTHL++HP A HIRLMQ+  L   ++  + ++  + G+RP +VL GDLNS P    +RYL  E IGPE E+W ++  F WG R  +         A+  A     EG+K GGE  E GDG   +    + +   + L  LS+ + P              +     A  G  +P + L      A G+P FTN+  GF ETLDY+F+E
Sbjct:   19 LLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKXXXXXAATAAVLEAEEGKK-GGE--EGGDGKAVAVDVGRESRGRETL--LSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLE 225
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BLAST of mRNA_S-dermatodea_contig8829.16956.1 vs. uniprot
Match: W7TNA6_9STRA (Endonuclease/exonuclease/phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNA6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.650e-21
Identity = 76/212 (35.85%), Postives = 109/212 (51.42%), Query Frame = 1 
Query:    4 VIVGNTHLYFHPNAAHIRLMQLVALTDRISRIREDLIAR-GLRPVVVLGGDLNSVPR-GPVRYLLREVIGPESELWSNVETFQWGDRLFD-------EVASPKAKTPGSEGQKNGGEKPENGDGATPSPAAIKSNNAVDDLPNLSAGSAP-------------GRPLCPPALPG--VPYMRLQLGLELASGMPAFTNFTPGFTETLDYVFIE 567
            ++VGNTHL++HP A HIRLMQ+  L   ++  + ++  + G+RP +VL GDLNS P    +RYL  E IGPE E+W ++  F WG R  +         A+  A     EG+K GGE  E GDG   +    + +   + L  LS+ + P              +     A  G  +P + L      A G+P FTN+  GF ETLDY+F+E
Sbjct:   60 LLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKXXXXXAATAAVLEAEEGKK-GGE--EGGDGKAVAVDVGRESRGRETL--LSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLE 266
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BLAST of mRNA_S-dermatodea_contig8829.16956.1 vs. uniprot
Match: A0A2A9MF24_9APIC (Endonuclease/exonuclease/phosphatase family protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MF24_9APIC)

HSP 1 Score: 80.9 bits (198), Expect = 1.800e-12
Identity = 92/293 (31.40%), Postives = 126/293 (43.00%), Query Frame = 1 
Query:    4 VIVGNTHLYFHPNAAHIRLMQLVALTDRISRIREDLIARGLRPVVVLGGDLNSVP-RGPVRYLLREVIGPESELWSNVETFQWGDRLFDEVASPKAKTPGSEGQKNGGEKPENGDGATPSPAAIKSNNAVDDLPNLSAGSAP------------------------GRPLCPPALPGV--PYMRLQL--GLEL----ASGMPAFTNFTPGFTETLDYVFIEGGAGGEGRXXXXXXXXXXXXXXXXXXXALLAVERAPAPVPEEGTLRAITPGLPCEAFPSDHISLVVDLAFSA 783
            +IV NTHL+FHP A H+RL+QL  ++  I  +RE   A  L P VVL GD N  P  G ++ L    +    + W +  +F+W     DE A       G+E ++  G+K  NG GA  + A   + N  DD  ++S  +AP                        GR     A   V  P + LQL  GL+L    A+   AF+NF  GF  TLDY++  G                                R P  V EE    +   GLPC A+PSDH+++ VDL   A
Sbjct:  486 LIVANTHLFFHPYARHVRLLQLYVMSHVIKDLREAFAAEQL-PSVVLCGDFNCQPGTGGIKLLKDGGVPAHLDDWLDGLSFRWE---ADEDA-------GAEEEEEQGDKKANG-GAPEAGAKGTAKNVSDD--HISPRAAPAAFSDAAXXXXXXXXXXEQEETTAGRKEETSAAENVANPGVALQLPGGLDLQDCYAAAPLAFSNFVCGFRATLDYIYASGD--------------------------FEVAARLPG-VSEEAV--SAHGGLPCHAYPSDHLAIAVDLKLRA 735
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BLAST of mRNA_S-dermatodea_contig8829.16956.1 vs. uniprot
Match: A0A812UPP5_9DINO (PDE12 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UPP5_9DINO)

HSP 1 Score: 77.4 bits (189), Expect = 2.830e-11
Identity = 70/261 (26.82%), Postives = 107/261 (41.00%), Query Frame = 1 
Query:    4 VIVGNTHLYFHPNAAHIRLMQLVALTDRISRIRED-LIARGLRPVVVLGGDLNSVPR-GPVRYLLREVIGPESELWSNVETFQWGDRLFDEVASPKAKTPGSEGQKNGGEKPENGDGATPSPAAIKSNNAVDDLPNLSAGSAPGRPLCPPALPGVPYMRLQLGLELASGMPA-FTNFTPGFTETLDYVFIEGGAGGEGRXXXXXXXXXXXXXXXXXXXALLAVERAPAPVPEEGTLRAITPGLPCEAFPSDHISLVVDLAF 777
            +++ NTHL++HPNA HIRL+Q++ L   +  +RE    A G  P V+  GDLN +P  G V+ LL   +  + E W     F W D      A    + P +               + PS  A +S+  V+ L   +     G  L  P         L   +++ +  P  FTN+   F+  LDY+  +                            LL+ +   AP  ++  +     GLP E  PSDH+S+  DL F
Sbjct:  996 LVLSNTHLFYHPNARHIRLLQIMCLLHEVQALREQHKDAEGRLPHVIFAGDLNCLPETGAVQLLLNGEVASDHEDWETSSQFAWRDEEVSADAGEAEEVPRT---------------SVPSMEADESD-VVEPLGREAWQKGSGIALRNP---------LGALVDVYANSPQKFTNYVHDFSGILDYILTD--------------------------DHLLSTKCLLAPAEKDVEVHG---GLPSELHPSDHLSIAADLTF 1202
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BLAST of mRNA_S-dermatodea_contig8829.16956.1 vs. uniprot
Match: A0A812UBU3_9DINO (Pde12 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812UBU3_9DINO)

HSP 1 Score: 75.9 bits (185), Expect = 6.210e-11
Identity = 70/261 (26.82%), Postives = 109/261 (41.76%), Query Frame = 1 
Query:    4 VIVGNTHLYFHPNAAHIRLMQLVALTDRISRIR-EDLIARGLRPVVVLGGDLNSVPR-GPVRYLLREVIGPESELWSNVETFQWGDRLFDEVASPKAKTPGSEGQKNGGEKPENGDGATPSPAAIKSNNAVDDLPNLSAGSAPGRPLCPPALPGVPYMRLQLGLELASGMPA-FTNFTPGFTETLDYVFIEGGAGGEGRXXXXXXXXXXXXXXXXXXXALLAVERAPAPVPEEGTLRAITPGLPCEAFPSDHISLVVDLAF 777
            +++ NTHL++HPNA HIRL+Q++ L   +  +R +   A+G  P ++  GDLN +P  G V+ LL   +  + E W     F W D                E   + GE  E    + PS  A +++  V+ LP  +     G  L  P         L   +++ +  P  FTN+   F+  LDY+  +G                           L A +   AP  ++  +     GLP    PSDH+S+  DL F
Sbjct:  410 LVLANTHLFYHPNARHIRLLQIMCLLHEVQELRNQHKDAKGELPHIIFAGDLNCLPETGAVQLLLTGQVPSDHEDWETSSQFAWRDE---------------EASADTGEAEEIPKSSVPSMEADETD-VVEPLPREAWQKGSGIALQNP---------LGALVDVYANTPQKFTNYVHDFSGILDYILTDG--------------------------QLQATKCLLAPAEKDVEVHG---GLPSVLHPSDHLSIAADLTF 616
[Close]
BLAST of mRNA_S-dermatodea_contig8829.16956.1 vs. uniprot
Match: A0A812NHM5_SYMMI (Pde12 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NHM5_SYMMI)

HSP 1 Score: 75.5 bits (184), Expect = 1.000e-10
Identity = 73/261 (27.97%), Postives = 108/261 (41.38%), Query Frame = 1 
Query:    4 VIVGNTHLYFHPNAAHIRLMQLVALTDRISRIRED-LIARGLRPVVVLGGDLNSVPR-GPVRYLLREVIGPESELWSNVETFQWGDRLFDEVASPKAKTPGSEGQKNGGEKPENGDGATPSPAAIKSNNAVDDLPNLSAGSAPGRPLCPPALPGVPYMRLQLGLELASGMPA-FTNFTPGFTETLDYVFIEGGAGGEGRXXXXXXXXXXXXXXXXXXXALLAVERAPAPVPEEGTLRAITPGLPCEAFPSDHISLVVDLAF 777
            +++ NTHL++HPNA HIRL+Q++ L   +  +R+    A G  P ++  GDLN +P  G V+ LL   +  + E W     F W D    E AS  A           GE  E    + PS  A    + V+ LP  +     G  L  P         L   +++ +  P  FTN+   F+  LDY+  +G                           L A +   AP  ++  +     GLP    PSDH+S+  DL F
Sbjct:  273 LVLANTHLFYHPNARHIRLLQIMCLLHEVQDLRKQHKDAEGQLPHIIFAGDLNCLPETGAVQLLLTGQVPSDHEDWETSSQFAWRD----EEASADA-----------GEAEEIPKSSVPSMEA-DDTDVVEPLPREAWQKGSGIALQNP---------LGALVDVYANTPQKFTNYVHDFSGILDYILTDG--------------------------QLQATKCLLAPAEKDVEVHG---GLPSVLHPSDHLSIAADLTF 479
[Close]
BLAST of mRNA_S-dermatodea_contig8829.16956.1 vs. uniprot
Match: A0A812M0P0_9DINO (MPK1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812M0P0_9DINO)

HSP 1 Score: 75.5 bits (184), Expect = 1.140e-10
Identity = 73/261 (27.97%), Postives = 108/261 (41.38%), Query Frame = 1 
Query:    4 VIVGNTHLYFHPNAAHIRLMQLVALTDRISRIRED-LIARGLRPVVVLGGDLNSVPR-GPVRYLLREVIGPESELWSNVETFQWGDRLFDEVASPKAKTPGSEGQKNGGEKPENGDGATPSPAAIKSNNAVDDLPNLSAGSAPGRPLCPPALPGVPYMRLQLGLELASGMPA-FTNFTPGFTETLDYVFIEGGAGGEGRXXXXXXXXXXXXXXXXXXXALLAVERAPAPVPEEGTLRAITPGLPCEAFPSDHISLVVDLAF 777
            +++ NTHL++HPNA HIRL+Q++ L   +  +R+    A G  P ++  GDLN +P  G V+ LL   +  + E W     F W D    E AS  A           GE  E    + PS  A    + V+ LP  +     G  L  P         L   +++ +  P  FTN+   F+  LDY+  +G                           L A +   AP  ++  +     GLP    PSDH+S+  DL F
Sbjct:  587 LVLANTHLFYHPNARHIRLLQIMCLLHEVQDLRKQHKDAEGQLPHIIFAGDLNCLPETGAVQLLLTGQVPSDHEDWETSSQFAWRD----EEASADA-----------GEAEEIPKSSVPSMEA-DDTDVVEPLPREAWQKGSGIALQNP---------LGALVDVYANTPQKFTNYVHDFSGILDYILTDG--------------------------QLQATKCLLAPAEKDVEVHG---GLPSVLHPSDHLSIAADLTF 793
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8829.16956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYP3_ECTSI5.780e-6951.06Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JRV9_9PHAE2.180e-5355.94Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A836CIF3_9STRA1.830e-3033.45Endonuclease/exonuclease/phosphatase n=1 Tax=Tribo... [more]
W7T5B9_9STRA4.160e-2135.85Endonuclease/exonuclease/phosphatase n=1 Tax=Nanno... [more]
W7TNA6_9STRA8.650e-2135.85Endonuclease/exonuclease/phosphatase n=2 Tax=Monod... [more]
A0A2A9MF24_9APIC1.800e-1231.40Endonuclease/exonuclease/phosphatase family protei... [more]
A0A812UPP5_9DINO2.830e-1126.82PDE12 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A812UBU3_9DINO6.210e-1126.82Pde12 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A812NHM5_SYMMI1.000e-1027.97Pde12 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A812M0P0_9DINO1.140e-1027.97MPK1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8829contigS-dermatodea_contig8829:714..6454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.0
Seed ortholog evalue5e-51
Seed eggNOG ortholog2880.D7FYP3
KEGG koko:K19612
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG0620@2759
EC3.1.13.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029
Hectar predicted targeting categoryother localisation
Exons3
Model size1428
Cds size726
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8829.16956.1prot_S-dermatodea_contig8829.16956.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8829 774..5812 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925368.719023-UTR-S-dermatodea_contig8829:713..7731622925368.719023-UTR-S-dermatodea_contig8829:713..773Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8829 714..773 +
1694079886.268978-UTR-S-dermatodea_contig8829:713..7731694079886.268978-UTR-S-dermatodea_contig8829:713..773Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8829 714..773 +
1622925368.7708726-UTR-S-dermatodea_contig8829:5812..64541622925368.7708726-UTR-S-dermatodea_contig8829:5812..6454Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8829 5813..6454 +
1694079886.306992-UTR-S-dermatodea_contig8829:5812..64541694079886.306992-UTR-S-dermatodea_contig8829:5812..6454Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8829 5813..6454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925368.7295556-CDS-S-dermatodea_contig8829:773..7991622925368.7295556-CDS-S-dermatodea_contig8829:773..799Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8829 774..799 +
1694079886.2805758-CDS-S-dermatodea_contig8829:773..7991694079886.2805758-CDS-S-dermatodea_contig8829:773..799Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8829 774..799 +
1622925368.7447982-CDS-S-dermatodea_contig8829:4117..42791622925368.7447982-CDS-S-dermatodea_contig8829:4117..4279Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8829 4118..4279 +
1694079886.289284-CDS-S-dermatodea_contig8829:4117..42791694079886.289284-CDS-S-dermatodea_contig8829:4117..4279Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8829 4118..4279 +
1622925368.7610302-CDS-S-dermatodea_contig8829:5274..58121622925368.7610302-CDS-S-dermatodea_contig8829:5274..5812Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8829 5275..5812 +
1694079886.2979934-CDS-S-dermatodea_contig8829:5274..58121694079886.2979934-CDS-S-dermatodea_contig8829:5274..5812Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8829 5275..5812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8829.16956.1

>prot_S-dermatodea_contig8829.16956.1 ID=prot_S-dermatodea_contig8829.16956.1|Name=mRNA_S-dermatodea_contig8829.16956.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=242bp
MQLVALTDRISRIREDLIARGLRPVVVLGGDLNSVPRGPVRYLLREVIGP
ESELWSNVETFQWGDRLFDEVASPKAKTPGSEGQKNGGEKPENGDGATPS
PAAIKSNNAVDDLPNLSAGSAPGRPLCPPALPGVPYMRLQLGLELASGMP
AFTNFTPGFTETLDYVFIEGGAGGEGRGGGVGGSVSCRVAAGAGSGALLA
VERAPAPVPEEGTLRAITPGLPCEAFPSDHISLVVDLAFSA*
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mRNA from alignment at S-dermatodea_contig8829:714..6454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8829.16956.1 ID=mRNA_S-dermatodea_contig8829.16956.1|Name=mRNA_S-dermatodea_contig8829.16956.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5741bp|location=Sequence derived from alignment at S-dermatodea_contig8829:714..6454+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGTGATCGTGGGCAACACTCACCTGTACTTCCACCCCAACGCGGCGCA
CATCAGGCTCATGCAGCTCGTGGCGCTGACGGACAGGTATGGTACGAGCG
GGCGATGCTGCAGAGAATGAGATAGAGAGATAGAGATAATGACATAGAGA
GAGAGAGATAAATATATATATAGAGAGAGCTTGCGTTCGTCTGTCCGTCC
GTCGATCCATGTATACAAGCGAGTGAATCGGGCGTACCAGTACGTGGTAT
AAAAACGTTGAATGCCGCCCGTGGTTTTGGTTGGGCTTAGATGTAGCGGC
CCGCTCATGTACGTTTTTAATTCTAGCAGGCCCATGCTCCGAGGTATGCC
CTGCCCCCCTCTGTTGCCCAAGAGTTATTATAGGTTATGCCGATTCCTTC
CACGTATGTACTATGTAGGTAACTCCCGTGCCCCCCCCCCCCCTGATCTC
TCGATTTCTCATTGACCACGAGCGGGATCGGCAACCATAATGCATTGGTG
GGCCGGTCGCTTGTAAGCGTGATATACAAGTAAAAACATCGAATCAAATC
TATCATACGTTTGAGAAGAACAACGCCTGTATATATTTTTAGTGAACACC
GGTTTTAGCACGTTTTTTTTGTTAGTAGCGATTTAGAGTTGACATTTGAT
GCCGGCTTTTCTATACAATTCGTGATGCCAAATACCATAGGGATTTTAGA
GTGGTACAGTACGGATAAGTAATCTGTGCCAACGCACACCTCACGAAAGT
AGCCGTGGCTACCCACTATGTTGTAAGAAGTATAGCCTAGTGTAACTACA
GTATGTACAATGTACATACATATAAATAAAACACATATATATATTTCACA
TATAGGGCTCTCTATTTTATCTATATGTTCACCTTGTTTTTTTGCCTACT
ACTGTAGTTGTCAAGCCAGGCAATACGTACACAAGCGGCAAGGAAGGAGG
TGGGTTGGACATATTTCTAGCCACTTTTTTTCAGTTCGTTTTAACCCTTT
CGGGCCTGAGGCTGTTTTCGGGGCTAGGCCGTCTGCCCGCGCCGTATTTA
CTTCCTCCATGACTCTCCCCGCCGTAGCCGCGGAGAAAGAGTGATGATAA
CCCTGCCTACACGCGTTCTCCTTGCGTGCACTACTGTGGTCCACTTGTGC
GTGCACCCACCCATCAGCCCACCGGGAAATCGTATATGACCCGTACAAGT
GACGACGATATTCGGGCCAAAAACGGGCTATCAAAGTCCAAAAAGGCTTC
AAAGGCCACAAGACAGTACCGTTTTTTTTTCTTCAGAAATTGGTTTTGGT
TTTTACTACTGTATTATACTGAGGAAGACGTTTCGTAGATTTGTCATGTA
TTTATGCCCTGCGTGCACTACGGACGGTGCACTTGTCCGCTGACGTCACT
CACCGCGATAGGATAGATCACTCAGCCCCTAAAAGGGTTATAACCCTTCC
GGGCCTGAGGCTGTTTTCAGGGTTAGGTCATCTGCCCGCACCGTATTTGA
CATGGAACAGGTACAGTACCCGAACGGTTGCTATTAACCCTTTTGGGTCT
GTTTTCGGGGTTAGGTTATCTGCCCGCACCGTATTTAACATGTAACAGGT
ACAGTACCCGAGCGGTGGCTACTAATCCTTACGGGCCTGTGGCTTTGTTC
TTTTTTCGGGGTTAGGTTATCTGCCCGCACCGTATTTAACATGGAACAGG
TACAGTACCCGAACGGTGGCTACTAACCCTTACGGGCCTGTGGCTTTGTT
CTTTTTTCGGGGTTAGGTCATCTGCCCGCACCGTATTTAACATGGAAGAG
GTACAGTACCCGAACGGTGGCTACTAACCCTTACGGGCCTGTGGCTTTGT
TATTTTTTCGGGGTTAGGTCATCTGCCCGCACCGTATTTAACATGGAAGA
GGTACAATACCCAAACGGTTGCTACTAACCCTTTCGGGTCTGATGCTATT
TTCGGGGTTATTAGGCCATCTGCCCGCGCTGTATTTGACATTAAACAGGT
ACAGTCCCGAACGGTTGCTATTAACCCTTTCGGGCCTGAGGCTTTTTTCG
GGGTTAGGTCATCTGCCCGCACCGTATTGATGGGGCCCGAACGGGTTAGT
AGCCACCGTTCGGGTACTGTACCTGTTCCATGTTAAATACGGTGCGGGCA
GATGACCTAACCCCGAAAATAGCCCCAGGCCCGAAAGGGTCACATGAACC
CTTACCAGTTTTTAGTCTCATTTCTTGTTGATTGCCACACAGTACGGTAG
GTAGCCACGGCTACGCCCGTGAGGTGTGTGCGTGGCCGCTCGACGCTAAA
ATCAGGTTGTCTGGCGCTCAACACAAACATCAAGTTATTTGGCATCGATT
TGACCCTCTCTAAAACCCCTATCAATTTTGTTACGCAAAACGTATAGGAC
ATATTGACGGCGTGGTTACTCACTCTAAAATCACTATGAAAAACCGGTCA
AAGCGCTATTAATTAATACAGATACGCACGGATACCGCGCGCCCCGTGGT
TGAAGTGGTACTATTAATACTAATACTACTACTAATATTAATACTAATAT
TAATACACCAACGACCAGTAAGGCGGAGTACGCGGGTTCGAATCCTGGCA
GAGTCGATAGTTATTTGTTTGATTTCTCTTATCTCCACCGCGGAAAGCGC
GAGAGCGTGAGTAAGCAAAACATCCGAGAAATCGGCGAGCTGAGGAAGTG
CCGAACCCAATGCATTCGCGATAAAACCTTAAGGTAAGAACCGGGGATAA
GATGAGAGAGATGGGATTATCCCGTGTGACCACAGACCTACCTCGGAAAA
GCTTATCTATAATATGTGTGCAACAAACAAAAATCGTTGTAAATATCATA
CATACTTGCGAGTGCATCCGTCTCGGCGGTTTTGTCGTATTATATATTGT
ACCACAAAATAATGGTGTGTTTGTAGAGAAGAAAATTTGTCATGACAACC
TTGTTTTTACCGAAACCCTCCCCCCTAGCATTGGGGTTAAACCAACCTTT
TTGGTAGAGGAAAAAAGAAGACCCAATCTAATTCAGTGGGAGCGTACGTT
ATATATGACCCCCGCCCCCCCCGCCCCCTAAAAAATTATACATTTCAGAA
ACATAGAGCGAGCGTTGGGGTCCCACCTTTTCAAGAGGGAAGATGGTCCA
AGCTACACCTGTGGCTCACTTATCACATATGATGCTTTGGTGTCTTATCA
TGTATGATGTCATACGGTTATGGTATCATAGAGGACATGAATAAGAGGGC
TCACTCTTGTATTAATTAATAAGGATGATGTTATATGGTTCCCCGCCCCC
GCCGTTTTCCTGCCCGCGAATATTTTATTTTGACAACACCCCACCTTCCT
CCCCCGCCTTCCTCGCCCCGTGCCGCACCCACCCAAAACACCTGTACCCC
AAAGAATATCGCGCATCCGAGAGGACCTGATTGCAAGAGGTCTTAGGCCG
GTTGTTGTCCTAGGCGGCGACCTGAACAGCGTACCACGAGGGCCCGTGCG
GTACCTCTTGAGAGAGGTCATAGGTCCCGAAAGCGAGCTTTGGAGCAACG
TCGAGACGTTTCAGTGGTGAGTGAGGGGGAGATAATTTGGTGCGTGTGTG
TGTGTGTGTGGTGGTGATGATGGTGATGATGATGGTGATGATGGTGATGA
TGGTGATGATGGTGATGACGACGGTTTCAGTCACACCTTATGTTGTCATA
TCAAAAGCCAGCCTTGGGTGTGCGTGTCTTGTGTGTGTGTGGTGGTATTG
ATTACGAGTATGTTCTCGCGTTATCTGATAAGACACAGAAATCGAGGCCT
TTGTGTGCATGTGTGTTCTCGTATGTGTAAGATACGTGTGCGGTGTGTGT
GTATGTTTTTTTTTTTTTTTTCTGGCAGTCAGTCGGTGGGGCTCACGTTT
TCGCTCGCTTCGGGCCTTGTTGTGGTATTTTTTTTGCTGTTATGCGGCTG
CTCTGATTTTTTCGACAACGACCAATCTGTACCGTAATTGTTTTTGCGCG
AAGGGCCTTTATAGCAGCACTCTCTCTCTTGTGTGTGTGTGTGACTCTAT
ATGTGTGACTCTCTGTGTGTCTGGCCCTCTATGTGTGTGTTTGGTGTCTG
CCTTTTTTTTTTTGCGTCTTCGCGTGTTTATTGTTTGTGTCGTATCGGTA
AGGACTCTATTCCATCCGTTATTCATACAATGGAAGCATTTCGGGTGTCG
CACGATAATTCCGTGCTCCCTTTTTGTTTCTGTGCCAATTTCTCGATTTC
TTTCTCCAAGCAAACCCTGTGCCACTTATAGAACAACAGGCGAGTTTCTT
GACCATAATCCATCGTTACAATATGAGCCGGAGATTGTGCGCATACAAAG
GACAGCGGTTGTAGTACACGTCATATGGGTGTATTAAATAAACGTCCCCA
CCCCACCCCACCCCACCCCACCCAATCTCACCCCCCCCTAAACAAATAAT
GATTTCAAAACCATAGAGCGAACGTTAGGTCCCACCTTTTCAAGGAAGAA
GATGGTCCAAGCTCACCCCCCTCCCCCCCCCCCTACACCACCGCGACCAC
AAAATTCGCAGGGGTGACCGTCTCTTCGACGAGGTTGCCTCGCCCAAGGC
CAAAACCCCGGGGTCAGAAGGGCAAAAAAATGGTGGCGAGAAACCAGAAA
ACGGGGACGGGGCGACACCATCCCCGGCCGCTATCAAGAGCAACAACGCC
GTCGACGACCTACCAAACCTCTCGGCGGGAAGTGCTCCCGGCCGCCCCCT
CTGCCCGCCCGCGCTTCCGGGCGTGCCTTACATGAGGCTCCAGCTAGGCC
TCGAGCTCGCCTCTGGAATGCCGGCTTTCACGAACTTTACGCCGGGTTTC
ACAGAGACTCTTGACTACGTTTTCATCGAGGGGGGAGCAGGAGGAGAGGG
ACGGGGGGGGGGAGTGGGAGGAAGCGTGAGTTGTAGGGTTGCAGCGGGGG
CAGGAAGTGGTGCGTTGCTCGCGGTGGAGAGGGCTCCCGCGCCGGTGCCC
GAGGAGGGGACACTGAGGGCGATTACCCCGGGTTTGCCTTGTGAGGCATT
TCCGTCGGATCACATCTCGCTTGTCGTTGACCTCGCTTTTTCGGCGTGAT
GTGGGGGGGGACGGAGGGCGGAGGCGCTGCCGTTGAAAGGTGTGGTGTTG
CGGGTCGTGTGTGTGTGAGACTCACGTCTAACTGAGAGGCAACTTAGGGA
TCTGGTCGTACCGTCTCAGCTCTCCCCGGTCTGTGCTTTTGCTTGCCTCA
GGCTCTTATGGCAACTGCAATGGTATTTTAGTAATAGCGCTTTGAAGGTC
CGACAACAGCCGAACAGAACGGTGCGAGAGAAAGGGGGGGGGGGGAGACG
GGCGAATACAACGAAATATCTAGGCTGCCTTACCCGCGAGAGACAAGAGC
GGTAACGATAATAGATGATTACTGTCCTTTGGGACACCATAAAAATACGG
CGAGTAAGGTACAATGATTAATCCTCGAGTTCGGTAGACAACAACGTAGT
TTTATATACAAAACGGTTTATTTTGCACACATAGAGCTAGCATATATGAT
AGACCGGCTTTTGCGAGGTCCGTATGTGGGAACAGAAGGGATCATCCCAT
CCCATCTCTCTCTCGATTCCTACCATAGGGGTTTGCGCGCATTGAGTTCG
GCACTATCACACCGCAGCTCGCCGATTTTCTCGAATAGAAAATAATACCC
CGTGCAAGGGTAGGTAAAAAAAAATTGCTGGACCCACACTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8829:714..6454+

>mRNA_S-dermatodea_contig8829.16956.1 ID=mRNA_S-dermatodea_contig8829.16956.1|Name=mRNA_S-dermatodea_contig8829.16956.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1452bp|location=Sequence derived from alignment at S-dermatodea_contig8829:714..6454+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGCTCGTGGCGCTGACGGACAGATGCAGCTCGTGGCGCTGACGGAC
AGAATATCGCGCATCCGAGAGGACCTGATTGCAAGAGGTCTTAGGCCGGT
TGTTGTCCTAGGCGGCGACCTGAACAGCGTACCACGAGGGCCCGTGCGGT
ACCTCTTGAGAGAGGTCATAGGTCCCGAAAGCGAGCTTTGGAGCAACGTC
GAGACGTTTCAGTGAATATCGCGCATCCGAGAGGACCTGATTGCAAGAGG
TCTTAGGCCGGTTGTTGTCCTAGGCGGCGACCTGAACAGCGTACCACGAG
GGCCCGTGCGGTACCTCTTGAGAGAGGTCATAGGTCCCGAAAGCGAGCTT
TGGAGCAACGTCGAGACGTTTCAGTGGGGTGACCGTCTCTTCGACGAGGT
TGCCTCGCCCAAGGCCAAAACCCCGGGGTCAGAAGGGCAAAAAAATGGTG
GCGAGAAACCAGAAAACGGGGACGGGGCGACACCATCCCCGGCCGCTATC
AAGAGCAACAACGCCGTCGACGACCTACCAAACCTCTCGGCGGGAAGTGC
TCCCGGCCGCCCCCTCTGCCCGCCCGCGCTTCCGGGCGTGCCTTACATGA
GGCTCCAGCTAGGCCTCGAGCTCGCCTCTGGAATGCCGGCTTTCACGAAC
TTTACGCCGGGTTTCACAGAGACTCTTGACTACGTTTTCATCGAGGGGGG
AGCAGGAGGAGAGGGACGGGGGGGGGGAGTGGGAGGAAGCGTGAGTTGTA
GGGTTGCAGCGGGGGCAGGAAGTGGTGCGTTGCTCGCGGTGGAGAGGGCT
CCCGCGCCGGTGCCCGAGGAGGGGACACTGAGGGCGATTACCCCGGGTTT
GCCTTGTGAGGCATTTCCGTCGGATCACATCTCGCTTGTCGTTGACCTCG
CTTTTTCGGCGTGAGGGTGACCGTCTCTTCGACGAGGTTGCCTCGCCCAA
GGCCAAAACCCCGGGGTCAGAAGGGCAAAAAAATGGTGGCGAGAAACCAG
AAAACGGGGACGGGGCGACACCATCCCCGGCCGCTATCAAGAGCAACAAC
GCCGTCGACGACCTACCAAACCTCTCGGCGGGAAGTGCTCCCGGCCGCCC
CCTCTGCCCGCCCGCGCTTCCGGGCGTGCCTTACATGAGGCTCCAGCTAG
GCCTCGAGCTCGCCTCTGGAATGCCGGCTTTCACGAACTTTACGCCGGGT
TTCACAGAGACTCTTGACTACGTTTTCATCGAGGGGGGAGCAGGAGGAGA
GGGACGGGGGGGGGGAGTGGGAGGAAGCGTGAGTTGTAGGGTTGCAGCGG
GGGCAGGAAGTGGTGCGTTGCTCGCGGTGGAGAGGGCTCCCGCGCCGGTG
CCCGAGGAGGGGACACTGAGGGCGATTACCCCGGGTTTGCCTTGTGAGGC
ATTTCCGTCGGATCACATCTCGCTTGTCGTTGACCTCGCTTTTTCGGCGT
GA
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