mRNA_S-dermatodea_contig8153.16353.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig8153.16353.1 vs. uniprot
Match: D8LPM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM5_ECTSI) HSP 1 Score: 442 bits (1138), Expect = 1.620e-140 Identity = 333/826 (40.31%), Postives = 415/826 (50.24%), Query Frame = 1
Query: 1 VYRSYWRQSEVSLQDLHAFVRAHRLGISPTTLRDMVGKARAKRRDWRAQRRDLPVKVARDSLWVEDVVWALRVRKTRREFDKWEVSEHRDEWVAILEAATPDNPTVFAAPADHRIAPPLSYTELLEEFTHATCTNNAVSAPRSGGFSSYGSSG-----SERQFSRGREGGGTSTESRCAWNVNDRR-GKYFGACVNMRGYPSGKTHRTPRAASGVNSIYRRSGSAGKMWLTLEARAPSSLLLTPRPGSAAAGMAAGAT------------------TAGSNEWEGEGGVRESTLL----WFPNGGSSGAGGRGWGRRGAQAIPGQEWRLFARKPTPIMAARSTCYAPRRRPPCSIDGRRPIPGITSAD-TVELYEMDGDINSSGFAFVEPAAADLSTTATPLCEPRHELGAK---WGSI-TSAATFDENTDPYHIHAAESG---------IEVSNEDNNNDPHASLPINASSSATPSDRRL--PPESRGTPGVNEAPIAPAGGMAAEPCCRDIWNDE-----GDSEVEWWREAMAP-SLRPEIKCPLFGVAAESDVGVWRGEGGAGGDL-------CGD-------------------------RRPATAPTCGFSTELKQRDLEGRLRQRSSISELEGLAWTRVQAREVALTCARSGTRFRHTIGRDSIRKNFDRSMKEKACETLAVDLRGYGNPLIAPET--TSPRGDKIPPPRPRSST------------TQRNAW------------------------LPGKGGASGRALLRNKPPPFRATRGRTLQQDHVTVAVDQADMWGKCAQANFGRFGEKPYVHCF 2118
V RS + DL FV AH LGIS TLR+MVG+AR+KR +WRA+ +DLP++V RD+LWVEDV+WALRVRKTRREFDKWE++E+RDEWV+ILEAATP+N TVFA P DHRIAPPLS+TELL++ + + +V + GG S+ S+G S+ R G + S N ++RR G + S+ R S GKMW LE+R P+SLLLT RPGSAAA A G T NEW GEGG + T+ W GGS GA G G G + QE LF RKP+P ARST YAPRRRPPCS DGRR P + S D T ELYEM+ DIN+S FA + A DLS TA R + + WGS+ TSA TFD+ H +A S I+ S AS + A ++A +R+ P P N+ GG S EWW EA+ P S RP + L + G +G GG G CG R A AP CGFSTE KQR+LE L++RSS+ + EGLA RV+ E L A+SGTRFRH IGR +IR+N+D+S+++KACETLA+DLRGYG L+APET T P R S++ + AW LP GA +KPPPF RG T+Q+ +T QA MWGKC+Q +FGRF EKPYVH F
Sbjct: 35 VVRSAFAAISSRFPDLQVFVGAHGLGISQATLREMVGRARSKRSNWRARGKDLPLRVMRDTLWVEDVMWALRVRKTRREFDKWEINEYRDEWVSILEAATPNNHTVFAPPPDHRIAPPLSFTELLQQDSSSL---PSVLSANPGGSSASVSNGXXXXTGSHLTSQSRGGRNDRSGSTGTGNSSERRIGGAXXXXXXXXXXXXXXXXXXXXXXXSMGSV-TRPVSTGKMWTPLESRLPTSLLLTSRPGSAAA--AVGGTGXXXXXDLAXXXXXXXXXXXXGNEWGGEGGAEDPTVWNFSSWTNGGGSGGANGHGSCEEG-HVVTAQERALFGRKPSPATVARSTSYAPRRRPPCSTDGRRHRPEVGSGDDTAELYEMERDINTSSFALAD--ATDLSITAASHKRGRGDGRSAVRAWGSVATSALTFDDAAGLSHANAEASADSATETSDRIDASASGGGRLRRASGTVTAGATAAAGVKRIGVPTFELSCPEDNDDQDDTGGGRQGXXXXXXXXXXXXXXXXAGSAAEWWCEALGPTSRRPVTRRSLDHSGGVAGRGAPQGTGGTWGPWEEDPGGGCGQHERSGCGWTSDGTVQGGEGYRGGRRRASAAAPNCGFSTESKQRNLEDFLKRRSSMDKSEGLASERVRVWEAGLARAQSGTRFRHQIGRGTIRENYDQSLRDKACETLALDLRGYGTHLLAPETATTIPTAGGGASERCASASGAGVAATGTPTRAMKRAWSSTRIGGXXXXXXXXXXXGGVRLLLPSPTGAGADC---SKPPPFGPVRGTTVQEARITAVTHQAGMWGKCSQGHFGRFEEKPYVHSF 848
BLAST of mRNA_S-dermatodea_contig8153.16353.1 vs. uniprot
Match: A0A6H5JI14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI14_9PHAE) HSP 1 Score: 230 bits (587), Expect = 1.820e-60 Identity = 158/336 (47.02%), Postives = 190/336 (56.55%), Query Frame = 1
Query: 40 QDLHAFVRAHRLGISPTTLRDMVGKARAKRRDWRAQRRDLPVKVARDSLWVEDVVWALRVRKTRREFDKWEVSEHRDEWVAILEAATPDNPTVFAAPADHRIAPPLSYTELLEEFTHATCTNNAVSAPRSGGFSSYGSSGSERQF-------SRGREGGGTSTESRCAWNVNDRRGKYFGACVNMRGYPSGKTHRTPRAASGVNSIYRRSGSAGKMWLTLEARAPSSLLLTPRPGSAAAGMA---AGA------TTAGS-------NEWEGEGGVRESTLL----WFPNGGSSGAGGRGWGRRGAQAIPGQEWRLFARKPTPIMAARSTCYAPRRR 966
+DL FV AH LGIS TLR+MVGKAR+KR +WRA+ +DLP++V RD+LWVEDV+WALRVRKTRREFDKWE +EHRDEWV+ILEAATP+N TVFA P DHRIAPPLS+TELL++ + + +V + GG S+ SRG + G + C + V R S GKMW+ LE+R P+SLLLT RPGSA AG+ AGA TT G+ NEW GEGG + T+ W GGS GA G G G A QE LF RKP+P ARST YAPR R
Sbjct: 30 EDLQVFVGAHGLGISQATLREMVGKARSKRSNWRARGKDLPLRVMRDTLWVEDVMWALRVRKTRREFDKWEFNEHRDEWVSILEAATPNNHTVFAPPPDHRIAPPLSFTELLQQDSSSL---PSVLSANPGGSSAXXXXXXXXXXXSHLTSQSRGGKKGRSGNTGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESMGSVT----RPVSTGKMWVPLESRLPTSLLLTSRPGSAEAGVGETGAGACGDLATTTGGTPTVVTGGNEWGGEGGAEDPTVWNFSSWTNGGGSGGANGHGSCGEGHVATA-QERALFGRKPSPATVARSTSYAPRLR 357 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8153.16353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8153.16353.1 >prot_S-dermatodea_contig8153.16353.1 ID=prot_S-dermatodea_contig8153.16353.1|Name=mRNA_S-dermatodea_contig8153.16353.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=706bp VYRSYWRQSEVSLQDLHAFVRAHRLGISPTTLRDMVGKARAKRRDWRAQRback to top mRNA from alignment at S-dermatodea_contig8153:1140..6441+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8153.16353.1 ID=mRNA_S-dermatodea_contig8153.16353.1|Name=mRNA_S-dermatodea_contig8153.16353.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5302bp|location=Sequence derived from alignment at S-dermatodea_contig8153:1140..6441+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8153:1140..6441+ >mRNA_S-dermatodea_contig8153.16353.1 ID=mRNA_S-dermatodea_contig8153.16353.1|Name=mRNA_S-dermatodea_contig8153.16353.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4236bp|location=Sequence derived from alignment at S-dermatodea_contig8153:1140..6441+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |