|
|
Homology
BLAST of mRNA_S-dermatodea_contig7992.16179.1 vs. uniprot
Match: A0A6H5K2S4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2S4_9PHAE) HSP 1 Score: 378 bits (971), Expect = 2.280e-123 Identity = 250/506 (49.41%), Postives = 302/506 (59.68%), Query Frame = 1
Query: 22 RVGRTWKEKQRTRVPCVDLDDNPFCIERRVNEELHTIQLNRNPSLAHLTSADVRRTASFVVDDAKPFRDFSRKKRHLLAWSLRSASASEVSPRKPAQKA----TRKSNTVPPRLGGHDVDVNHLFAQKEKRRRR----RDGADVDVDTMPNLEPYRREVVAQQPTTFGHRPISASRMFNPSTMATTF-TPSGGDGNNGSGVNSSRIRGRGAHKQTATNSSKRGGKARRAPGLSAPMLKELLLGNKKRGAGFGMTPALAASRGPGADGGIAQDFESRGKELGRGRFGA-GYVVLDSQDEL------SETLNGSLG-SVDP----GVLQDLKATWLTSSSREGPRKRKHLKGGCIEETELRRIFHADRPPWDETPAPLPVPREVRRAVSSLLMPDPDERLRDKLIKSRKAAAGIPVTASSIKEERERSTQP--ETSSGRWELPPATPRMVIARDEVKRLVEDRRERDSAMARRVRQAELSVFYNKILPSEERYRDTLARGSTRFKPAG 1470
R+ TWK++QRTRVP VDLDDNPFC+ERR NEE H +QLN+ KPFR+FSRKKR+LLAWS+R+ASAS+ + + A K R S TV L G D+ F + R D +VDVDT+P LEPYRREVVAQQP TFGHRP+SASRMFNP TMAT+ PS G + G+ R +G G H R K RR GLSAPMLK LL G+ G G + + + FE G + R Y+VLD Q++L SE L+ S SVD L +L++ WL +SS G + G E EL RIF ++RPPWD PAPLP P+ RRA+SSLLMPDPDERLRDKLIKSRKAAAG+PVTASS K+ERER +P T GRWE+ PATPR VIAR E++RL E R ERD AMA++VRQAELSV + KI PSE+ YR+TL RF+ G
Sbjct: 17 RLAMTWKDRQRTRVPVVDLDDNPFCVERRTNEEWHMMQLNK-----------------------KPFREFSRKKRNLLAWSIRAASASDAAAQSTANKTHMPTRRLSTTVRSDLDG--TDIGEFFNMERGMSGRVLHPTDRVEVDVDTLPTLEPYRREVVAQQPITFGHRPLSASRMFNPCTMATSCGIPSDGHHPSTGGIRG-RKKGGGGHXXXXXXXRGRNSKPRRTTGLSAPMLKALLRGDTPTGEGGAALVTASQHQ--------QELFEPNGNIVSRDSAPKPNYLVLDGQEDLTDSSVNSEKLDESKWRSVDDLGRGEALGELES-WLQTSSHSGLGHGRRRLGNTKEGQELHRIFSSERPPWDGAPAPLPAPQHTRRAISSLLMPDPDERLRDKLIKSRKAAAGVPVTASSTKDERERELRPFNPTPIGRWEVCPATPRAVIARQEIRRLSELREERDRAMAKKVRQAELSVLFKKIAPSEKLYRNTLQIAQERFRHQG 487
BLAST of mRNA_S-dermatodea_contig7992.16179.1 vs. uniprot
Match: A0A8K1C8G0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8G0_PYTOL) HSP 1 Score: 58.2 bits (139), Expect = 1.310e-5 Identity = 56/187 (29.95%), Postives = 77/187 (41.18%), Query Frame = 1
Query: 46 KQRTRVPCVDLDDNPFCIERRVNEELHTIQLNRNPSLAHLT--------SADVRRTASFVVDDAKPFRDFSRKKRHLLAWSLRSASASEVSPRKPAQKATRKSNTVPPRLGGHDVDVNHLFAQKEKRRRRRDGADVDVDTMPNLEPYRREVVAQQPTTFGHRPISASRMFNPSTMA-TTFTPSGGDG 579
K+R RVP VD+D NPFC+ER++ +E N+NP T + +SF+ D A R + + SA VS + A + P L + NH + ++ V P Y QP +FGHRP SASRM++P T TT S GDG
Sbjct: 31 KKRVRVPRVDVDANPFCVERQLADEYALHNFNKNPRFYLNTIKQSPPRIEKNPHNHSSFINDAADMMASSGFSPR--IRAEFTTPSAPSVSYKPMDYVAPSVISVDPSDL--RSIPKNHPLSPEKN------AVHVVSKFTPPTHAYYGSHKTTQPVSFGHRPDSASRMYDPLTSGLTTSRSSTGDG 207
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-26_000180.1 |
| Exons | 6 |
| Model size | 1485 |
| Cds size | 1485 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig7992.16179.1 >prot_S-dermatodea_contig7992.16179.1 ID=prot_S-dermatodea_contig7992.16179.1|Name=mRNA_S-dermatodea_contig7992.16179.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=495bp
MPLPRVGRVGRTWKEKQRTRVPCVDLDDNPFCIERRVNEELHTIQLNRNP
SLAHLTSADVRRTASFVVDDAKPFRDFSRKKRHLLAWSLRSASASEVSPR
KPAQKATRKSNTVPPRLGGHDVDVNHLFAQKEKRRRRRDGADVDVDTMPN
LEPYRREVVAQQPTTFGHRPISASRMFNPSTMATTFTPSGGDGNNGSGVN
SSRIRGRGAHKQTATNSSKRGGKARRAPGLSAPMLKELLLGNKKRGAGFG
MTPALAASRGPGADGGIAQDFESRGKELGRGRFGAGYVVLDSQDELSETL
NGSLGSVDPGVLQDLKATWLTSSSREGPRKRKHLKGGCIEETELRRIFHA
DRPPWDETPAPLPVPREVRRAVSSLLMPDPDERLRDKLIKSRKAAAGIPV
TASSIKEERERSTQPETSSGRWELPPATPRMVIARDEVKRLVEDRRERDS
AMARRVRQAELSVFYNKILPSEERYRDTLARGSTRFKPAGAKDL* back to topmRNA from alignment at S-dermatodea_contig7992:4282..8618+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig7992.16179.1 ID=mRNA_S-dermatodea_contig7992.16179.1|Name=mRNA_S-dermatodea_contig7992.16179.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4337bp|location=Sequence derived from alignment at S-dermatodea_contig7992:4282..8618+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGCTGCCTCGCGTGGGTAGGGTGGGGAGGACGTGGAAGGAGAAACA
ACGCACTCGGGTTCCGTGCGTAGATCTCGACGACAACCCCTTCTGTATCG
AACGGCGAGTAAACGAGGAGCTCCACACAATCCAGTTAAACAGGGTGAGT
GACGGGTCTCGAGTGTGCCATAATGCGCCCTGGAAAGAGAGGGTGCTTGC
CCCGAGCTACCTCTGCACACGCACATCTCCAGCAACGCATGTCATTTGAT
CCACTACAGAACGCTACAAAGATAAGCCCTATGCGATATTGGTGTAAATG
TCGCAACACTGAGAGGGTATGTACAAGTATCGAGAATGAGCGTGACGAGC
CCTTGATGAGGGAGAGGGAGACACAATGATTCCGAGCGTTGTGTTAATTA
TTTCGTATCGTATCAGGTATGATACGTGTGTTGTGTTTGTTTGATTGATC
GATGATTGATTGCTTATCACACTTGCAACCGACTGGCCCGCCAATCATTA
TCGATCCCGCTCGTGGTCAGATGATAACTCGAGAAATGGAAAAAACAAAG
GATGTCCTGTGTACGACATGCTGGTCATACCACGAAATACATTATTATTA
TGTACTGCTACAGAGGTACACAGCAGAAATCAGGACCACTTTTCTGCTAA
ATTGCATACAACCTACAACAGAGACAGGTCAGCAGTACAAGTGTTCGAGT
CTTGTCTTTTAAACGTTGGCTCGAAAGCCTTGTATTATGCTTATAGTACT
TGTTGTTTTTTACATCTCAGGCCGGGAGGTTGCAGATGTTGAACAACTAA
GGCCAGACCACACATCGATTTAATGTTAATTTCCGGTTAGTTATATTGGG
TATACTTTTTGGGACATTTTGTCCTGATTACGCAAATAACGCTTAAAAAG
CGCACCGTACACCTCAAGCGTGAAAGATAAATGGGGTGTCTTAGCCCGCG
GGAAACAAAGGAAAACGACGACAAAAAAATACGCCGAAATCTCCCTCGCC
CTCGTTCCCCAAACACCGCCAACCGCGCGGCCCTGAAACTCGAAAGAGAA
ACTCAACATAGTGTGGGTACCCGGTTCTGGATAACGCTCTCGGTTCCCCC
GTTGTCATGGACGTACCGTTGGGCCACGTCAGGTCTGACCTTGATTTCCA
TGTTGTGCCGCGTTATGTCACACCCCGAGTGGGCGCCCCCCTGGACCAAT
CTGTCCTGGAGCCCACTCGGGAGCCTCCCACTACGTGGACCTCTCCGGGA
TCTACCATTCTCGAACCCTAGTCACCACTGCTCCCCATCAGGGGCTCACA
ACAGTAGAATTAAGAGAGTCGAATACGAGAAGATAATTCCGTAGTTTTAT
CGATTTATCGATTTCTTACCTGACCACGAGAGGTACCGGCGACCATTGAT
GGGCCGTTAGTTGGAACCCGTTAATTGGGACTGCGAAGAAAATCAAACAT
AAATCAGTCAATACGCGCAAACAAACAAATGCAACAAACATATTCCGTTG
CTACTACATAATGAGCTGAACAAATTGTCACTTCGGTACCGCCTTGGCCC
TGTATCATGTATCGCTGGTTGCGTCCTTTTTGCCTGGTTTGAGTCAAGCC
ACACAGGAGCAGCATCACACTAATATTAATTGAGCTCTATTTACATGTGG
TTCTATTTACTCTGTAGCGTCAAAGTCAACGCTTGTCATGACCAATTATA
TTATTTTTGGAGGAAGAGAGGCATCGAGGTGCCTTTACTCGTGTGCATAA
TACATTGTAAACCCGCGCCGCATGTGCCCGCGCGTTGAAAAATCGAATCC
GACCATATACGTACGAAGAACCCATCGCTGGCACACCTGACATCCGCTGA
TGTGCGGAGGACTGCTTCTTTCGTGGTGGACGATGCGGTGAGGCCACACG
ATATAAAACGACGCACCCTGGCCTGATTTTCCTACGTAGACATTTAGGCT
CTACTTTATACCTGGTACAATTGCAAGGGGTGCTTCTTTTCAAGTGGCGT
CCTCCTGACAGCGCCGTTGAAATGCCCCCAACGTACCAGGTAACACGATA
CCTAAGGCGGCTTCTTCAGAGGAGCGTGCACGCTACGTCGTTCTTTGCGC
AGAATAGTGCGCTGCCCATACGGGCTCGAGAAGAACAGTGCGCTACTTAT
GAACGAGAGACTCGTACATTAACACACGTACGTAGAGCACACATTCAGCA
AAAAGCAACGCGTGCACTATTTATATTTATACTGCTGCGTCTTTTGATTT
CATGACCGGGGCCCTCGGCAGAGCATCAGAGCAGAGCTGACCAAACATAA
ACCTTTCCTTTCCCTGGTGCTTTTCAGAAACCGTTCAGAGATTTCTCTCG
CAAAAAGCGTCATTTGCTGGCGTGGTCACTGCGGTCGGCATCGGCGTCCG
AGGTGTCTCCCCGCAAGCCGGCGCAGAAGGCAACACGCAAGAGCAACACG
GTTCCTCCTCGCCTAGGCGGCCATGATGTAGACGTGAACCATTTATTTGC
ACAGAAGGAGAAGCGCCGCCGACGACGGGACGGGGCCGACGTGGATGTGG
ACACAATGCCAAACCTAGAGCCCTACCGAAGAGAGGTCGTGGCCCAACAG
CCGACAACCTTTGGACACAGACCGATCTCGGCATCGCGAATGTTTAACCC
GTCCACGATGGCAACTACTTTCACCCCTAGTGGGGGCGATGGAAATAACG
GGAGTGGGGTTAACAGTAGCAGGATAAGAGGGAGGGGAGCACACAAGCAA
ACGGCGACGAACTCATCGAAGAGAGGAGGAAAGGCCCGGCGAGCGCCGGG
ACTAAGCGCCCCCATGCTGAAAGAGTTGTTGTTGGGCAACAAGAAACGGG
GCGCGGGGTTCGGGATGACACCTGCGCTTGCAGCGTCCAGGGGGCCAGGT
GCGGACGGTGGCATCGCTCAAGACTTCGAATCGAGAGGAAAGGAGTTAGG
CCGAGGTCGTTTTGGTGCGGGGTACGTTGTGCTCGATAGCCAGGACGAGC
TGAGCGAAACATTGAATGGAAGCTTGGGGTCCGTTGATCCTGGGGTGCTG
CAAGATCTAAAAGCTACGTGGCTGACAAGCTCCAGTCGAGAGGGGCCGCG
GAAAAGGAAACATCTTAAGGGGGGCTGCATCGAAGAGACCGAGCTTCGAC
GCATTTTCCACGCCGATGTGAGAAATAGGGTAGCATCAAGGTATATCTTG
TCGGATAGTGGTCCAAAGGCTTAGCCCAACTAACGAGCCTTTCCCCCCCG
CTTGATCTTCGAAAAAGGAACGCTTGATGCGAACATCAGTGAGTGGTAGT
TTAGTATTGCTTTTCTGCCCCAACTCTCTTCATTACACCATCGCCATTGC
ATTTTACGGTGTGTTTGCCACGAACAGCGGCCTCCCTGGGACGAGACGCC
TGCACCCCTGCCTGTGCCCAGAGAAGTCAGACGTGCCGTCAGTTCGCTGT
TGATGCCGGACCCAGACGAGAGGCTAAGAGACAAGCTCATCAAGTCTAGG
AAGGCGGCCGCGGGGATACCCGTCACCGCTTCCAGTATTAAGGAAGAAGT
AAGGCATGTCCATTAATAGTGTAGGGCCTAAACAGTTACACGTCGGCCAG
GCGTCGCGCTTGACAGTTTATTCCCTAAGCCAACCGCTGCAGTTGGTGCC
TGAACGGTGCTGAGGCGCATCGTGCCATACGCAGATTTGAGTCTGGCAGG
CCGACCAAGGTGTGGATGTTGGACGCAAAACCACTTCTGGGAAATACACG
ATTGCCCCTCCCCTGTTTCGGCCGCAACTCCTTCATGCAGAGAGAACGGA
GCACCCAACCCGAAACGTCCTCCGGACGGTGGGAGTTACCACCCGCTACT
CCTCGCATGGTGATTGCACGCGACGAGGTGAAGCGCCTGGTGGAAGACCG
GCGCGAGCGTGATAGTGCCATGGCGCGGCGTGTCCGCCAAGCTGAACTAA
GGTACAACATATATATGCGCTTCGAAAAGTTACGAGGGTTAGGGTCACTC
TGTCTGGTCGAGCAAACATCGCGTGTTGACGTTGTGTCACATGCTAGGGT
GCCTGTCGCTCATGAATCCTGGCGTTTCTTCTGCCGCGTATGTCCTTCTG
CTGCCGGGCTCTCAAGCGGGAGCGTGCAACAGTTGTGTTTAGAATAATGC
GATACAAGGGAAAAATCCTACTATGAGCTACTTATTTGCTGGAGCGCGCA
ACAAAACACGCTCGATCGCCCTATCTTGTGCTGGCAGCGTATTCTACAAT
AAGATCCTGCCCTCGGAGGAGCGTTACCGGGATACCCTAGCCCGAGGATC
GACGCGCTTCAAGCCCGCAGGGGCAAAGGATCTTTAA back to topCoding sequence (CDS) from alignment at S-dermatodea_contig7992:4282..8618+ >mRNA_S-dermatodea_contig7992.16179.1 ID=mRNA_S-dermatodea_contig7992.16179.1|Name=mRNA_S-dermatodea_contig7992.16179.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2970bp|location=Sequence derived from alignment at S-dermatodea_contig7992:4282..8618+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGCTGCCTCGCGTGGGTAGGGTGGGGAGGACGTGGAAGGAGAAACA
ACGCACTCGGGTTCCGTGCGTAGATCTCGACGACAACCCCTTCTGTATCG
AACGGCGAGTAAACGAGGAGCTCCACACAATCCAGTTAAACAGGATGCCG
CTGCCTCGCGTGGGTAGGGTGGGGAGGACGTGGAAGGAGAAACAACGCAC
TCGGGTTCCGTGCGTAGATCTCGACGACAACCCCTTCTGTATCGAACGGC
GAGTAAACGAGGAGCTCCACACAATCCAGTTAAACAGGAACCCATCGCTG
GCACACCTGACATCCGCTGATGTGCGGAGGACTGCTTCTTTCGTGGTGGA
CGATGCGAACCCATCGCTGGCACACCTGACATCCGCTGATGTGCGGAGGA
CTGCTTCTTTCGTGGTGGACGATGCGAAACCGTTCAGAGATTTCTCTCGC
AAAAAGCGTCATTTGCTGGCGTGGTCACTGCGGTCGGCATCGGCGTCCGA
GGTGTCTCCCCGCAAGCCGGCGCAGAAGGCAACACGCAAGAGCAACACGG
TTCCTCCTCGCCTAGGCGGCCATGATGTAGACGTGAACCATTTATTTGCA
CAGAAGGAGAAGCGCCGCCGACGACGGGACGGGGCCGACGTGGATGTGGA
CACAATGCCAAACCTAGAGCCCTACCGAAGAGAGGTCGTGGCCCAACAGC
CGACAACCTTTGGACACAGACCGATCTCGGCATCGCGAATGTTTAACCCG
TCCACGATGGCAACTACTTTCACCCCTAGTGGGGGCGATGGAAATAACGG
GAGTGGGGTTAACAGTAGCAGGATAAGAGGGAGGGGAGCACACAAGCAAA
CGGCGACGAACTCATCGAAGAGAGGAGGAAAGGCCCGGCGAGCGCCGGGA
CTAAGCGCCCCCATGCTGAAAGAGTTGTTGTTGGGCAACAAGAAACGGGG
CGCGGGGTTCGGGATGACACCTGCGCTTGCAGCGTCCAGGGGGCCAGGTG
CGGACGGTGGCATCGCTCAAGACTTCGAATCGAGAGGAAAGGAGTTAGGC
CGAGGTCGTTTTGGTGCGGGGTACGTTGTGCTCGATAGCCAGGACGAGCT
GAGCGAAACATTGAATGGAAGCTTGGGGTCCGTTGATCCTGGGGTGCTGC
AAGATCTAAAAGCTACGTGGCTGACAAGCTCCAGTCGAGAGGGGCCGCGG
AAAAGGAAACATCTTAAGGGGGGCTGCATCGAAGAGACCGAGCTTCGACG
CATTTTCCACGCCGATAAACCGTTCAGAGATTTCTCTCGCAAAAAGCGTC
ATTTGCTGGCGTGGTCACTGCGGTCGGCATCGGCGTCCGAGGTGTCTCCC
CGCAAGCCGGCGCAGAAGGCAACACGCAAGAGCAACACGGTTCCTCCTCG
CCTAGGCGGCCATGATGTAGACGTGAACCATTTATTTGCACAGAAGGAGA
AGCGCCGCCGACGACGGGACGGGGCCGACGTGGATGTGGACACAATGCCA
AACCTAGAGCCCTACCGAAGAGAGGTCGTGGCCCAACAGCCGACAACCTT
TGGACACAGACCGATCTCGGCATCGCGAATGTTTAACCCGTCCACGATGG
CAACTACTTTCACCCCTAGTGGGGGCGATGGAAATAACGGGAGTGGGGTT
AACAGTAGCAGGATAAGAGGGAGGGGAGCACACAAGCAAACGGCGACGAA
CTCATCGAAGAGAGGAGGAAAGGCCCGGCGAGCGCCGGGACTAAGCGCCC
CCATGCTGAAAGAGTTGTTGTTGGGCAACAAGAAACGGGGCGCGGGGTTC
GGGATGACACCTGCGCTTGCAGCGTCCAGGGGGCCAGGTGCGGACGGTGG
CATCGCTCAAGACTTCGAATCGAGAGGAAAGGAGTTAGGCCGAGGTCGTT
TTGGTGCGGGGTACGTTGTGCTCGATAGCCAGGACGAGCTGAGCGAAACA
TTGAATGGAAGCTTGGGGTCCGTTGATCCTGGGGTGCTGCAAGATCTAAA
AGCTACGTGGCTGACAAGCTCCAGTCGAGAGGGGCCGCGGAAAAGGAAAC
ATCTTAAGGGGGGCTGCATCGAAGAGACCGAGCTTCGACGCATTTTCCAC
GCCGATCGGCCTCCCTGGGACGAGACGCCTGCACCCCTGCCTGTGCCCAG
AGAAGTCAGACGTGCCGTCAGTTCGCTGTTGATGCCGGACCCAGACGAGA
GGCTAAGAGACAAGCTCATCAAGTCTAGGAAGGCGGCCGCGGGGATACCC
GTCACCGCTTCCAGTATTAAGGAAGAACGGCCTCCCTGGGACGAGACGCC
TGCACCCCTGCCTGTGCCCAGAGAAGTCAGACGTGCCGTCAGTTCGCTGT
TGATGCCGGACCCAGACGAGAGGCTAAGAGACAAGCTCATCAAGTCTAGG
AAGGCGGCCGCGGGGATACCCGTCACCGCTTCCAGTATTAAGGAAGAAAG
AGAACGGAGCACCCAACCCGAAACGTCCTCCGGACGGTGGGAGTTACCAC
CCGCTACTCCTCGCATGGTGATTGCACGCGACGAGGTGAAGCGCCTGGTG
GAAGACCGGCGCGAGCGTGATAGTGCCATGGCGCGGCGTGTCCGCCAAGC
TGAACTAAGAGAGAACGGAGCACCCAACCCGAAACGTCCTCCGGACGGTG
GGAGTTACCACCCGCTACTCCTCGCATGGTGATTGCACGCGACGAGGTGA
AGCGCCTGGTGGAAGACCGGCGCGAGCGTGATAGTGCCATGGCGCGGCGT
GTCCGCCAAGCTGAACTAAGCGTATTCTACAATAAGATCCTGCCCTCGGA
GGAGCGTTACCGGGATACCCTAGCCCGAGGATCGACGCGCTTCAAGCCCG
CAGGGGCAAAGGATCTTTAACGTATTCTACAATAAGATCCTGCCCTCGGA
GGAGCGTTACCGGGATACCCTAGCCCGAGGATCGACGCGCTTCAAGCCCG
CAGGGGCAAAGGATCTTTAA back to top
|