mRNA_S-dermatodea_contig79755.16168.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig79755.16168.1
Unique NamemRNA_S-dermatodea_contig79755.16168.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig79755.16168.1 vs. uniprot
Match: A0A6H5KSA0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA0_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.690e-31
Identity = 65/145 (44.83%), Postives = 87/145 (60.00%), Query Frame = 1 
Query:    1 IQLQKLNSITKTSKIAIPGVDEVLDTLGGGSAWSVSNLLSGCSQLTMDPRSVDLTAFFSPTGLYSWLCMPQGAACAPSWFVNVMRVVTDDLRNFRMYLDDAIGFDKIPPPHVATLASFFARLRRYRLILSPPSSRIGVTTVDFLG 435
            +  ++LN++       +P VD +LD+L  G+ +S+ +L S   Q+  D  +V LTAF +PT L+ WL MPQGA  +PSWFV V+  V   L     YLDDAI FD+ P  HV  L  FF RLR+Y L LSP  +R+G T   FLG
Sbjct:   43 VNYKRLNALVDLDGQPLPRVDGILDSLYTGNVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDDAICFDEEPLGHVLNLMEFFKRLRQYNLKLSPGKARVGATHASFLG 187
[Close]
BLAST of mRNA_S-dermatodea_contig79755.16168.1 vs. uniprot
Match: A0A6H5KLN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN7_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.860e-31
Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1 
Query:    1 IQLQKLNSITKTSKIAIPGVDEVLDTLGGGSAWSVSNLLSGCSQLTMDPRSVDLTAFFSPTGLYSWLCMPQGAACAPSWFVNVMRVVTDDLRNFRMYLDDAIGFDKIPPPHVATLASFFARLRRYRLILSPPSSRIGVTTVDFLG 435
            +  ++LN++       +  VD +LD+L  G  +S+ +L S   Q+  D  +V LTAF +PT L+ WL MPQGA  +PSWFV V+  V   L     YLDD I FD+ P  HV  L  FF RLR+Y L LSP  +R+G T  +FLG
Sbjct:   43 VSYKRLNALVDLDGQPLHRVDVILDSLYTGKVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKARVGATHANFLG 187
[Close]
BLAST of mRNA_S-dermatodea_contig79755.16168.1 vs. uniprot
Match: A0A6H5KB53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB53_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 4.030e-31
Identity = 64/145 (44.14%), Postives = 86/145 (59.31%), Query Frame = 1 
Query:    1 IQLQKLNSITKTSKIAIPGVDEVLDTLGGGSAWSVSNLLSGCSQLTMDPRSVDLTAFFSPTGLYSWLCMPQGAACAPSWFVNVMRVVTDDLRNFRMYLDDAIGFDKIPPPHVATLASFFARLRRYRLILSPPSSRIGVTTVDFLG 435
            +  ++LN++  +    +P VD +LD+L  G  +S+ +L S   Q+  D  +V LTAF +PT L+ WL MPQGA  +PSWFV V+  V   L     YLDD I FD+ P  HV  L  FF RLR+Y L LSP   R+G T  +FLG
Sbjct:  169 VNYKRLNALVDSDGQPLPRVDGILDSLHTGKVFSIFDLNSASHQIVCDENTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKGRVGATHANFLG 313
[Close]
BLAST of mRNA_S-dermatodea_contig79755.16168.1 vs. uniprot
Match: A0A6H5K9P3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 6.980e-31
Identity = 61/145 (42.07%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:    1 IQLQKLNSITKTSKIAIPGVDEVLDTLGGGSAWSVSNLLSGCSQLTMDPRSVDLTAFFSPTGLYSWLCMPQGAACAPSWFVNVMRVVTDDLRNFRMYLDDAIGFDKIPPPHVATLASFFARLRRYRLILSPPSSRIGVTTVDFLG 435
            +  ++LN++       +P VD +LD+L  G  +S+ +L S   Q+  D  +V LTAF +PT L+ WL MPQGA  +PSWFV V+  V   L    +YLDD I FDK P  HV  +  FF RL +Y L LSP  +R+  T  +F G
Sbjct:   67 VNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDDETVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLDRVLVYLDDVICFDKEPLRHVLNMIEFFKRLHQYNLKLSPGKARVSATHANFFG 211
[Close]
BLAST of mRNA_S-dermatodea_contig79755.16168.1 vs. uniprot
Match: A0A6H5L4V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.590e-30
Identity = 64/145 (44.14%), Postives = 86/145 (59.31%), Query Frame = 1 
Query:    1 IQLQKLNSITKTSKIAIPGVDEVLDTLGGGSAWSVSNLLSGCSQLTMDPRSVDLTAFFSPTGLYSWLCMPQGAACAPSWFVNVMRVVTDDLRNFRMYLDDAIGFDKIPPPHVATLASFFARLRRYRLILSPPSSRIGVTTVDFLG 435
            +  ++LN++       +P VD +LD+L  G  +S+ +L S   Q+  D  +V LTAF +PT L+ WL MPQGA  +PSWFV V+  V   L     YLDD I FD+ P  HV  L  FF RLR+Y L LSP  +R+G T  +FLG
Sbjct:  111 VNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKARVGATHANFLG 255
[Close]
BLAST of mRNA_S-dermatodea_contig79755.16168.1 vs. uniprot
Match: A0A6H5JVW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.970e-30
Identity = 64/145 (44.14%), Postives = 86/145 (59.31%), Query Frame = 1 
Query:    1 IQLQKLNSITKTSKIAIPGVDEVLDTLGGGSAWSVSNLLSGCSQLTMDPRSVDLTAFFSPTGLYSWLCMPQGAACAPSWFVNVMRVVTDDLRNFRMYLDDAIGFDKIPPPHVATLASFFARLRRYRLILSPPSSRIGVTTVDFLG 435
            +  ++LN++       +P VD +LD+L  G  +S+ +L S   Q+  D  +V LTAF +PT L+ WL MPQGA  +PSWFV V+  V   L     YLDD I FD+ P  HV  L  FF RLR+Y L LSP  +R+G T  +FLG
Sbjct:  762 VNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDKDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKARVGATHANFLG 906
[Close]
BLAST of mRNA_S-dermatodea_contig79755.16168.1 vs. uniprot
Match: A0A6H5L5J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J9_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.980e-30
Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 1 
Query:    1 IQLQKLNSITKTSKIAIPGVDEVLDTLGGGSAWSVSNLLSGCSQLTMDPRSVDLTAFFSPTGLYSWLCMPQGAACAPSWFVNVMRVVTDDLRNFRMYLDDAIGFDKIPPPHVATLASFFARLRRYRLILSPPSSRIGVTTVDFLG 435
            +  ++LN++       +P VD++LD L  G  +S+ +L S   Q+  D  +V LTAF +PT L+ WL MPQGA  +PSWFV V+  V   L     YLDD I FD+ P  HV  L  FF RLR+Y L LSP   R+G T  +FLG
Sbjct:   43 VNYKRLNALVDLDGQPLPRVDDILDFLYTGKVFSIFDLNSAFHQIESDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKGRVGATHANFLG 187
[Close]
BLAST of mRNA_S-dermatodea_contig79755.16168.1 vs. uniprot
Match: A0A6H5L8P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P3_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.610e-30
Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 1 
Query:    1 IQLQKLNSITKTSKIAIPGVDEVLDTLGGGSAWSVSNLLSGCSQLTMDPRSVDLTAFFSPTGLYSWLCMPQGAACAPSWFVNVMRVVTDDLRNFRMYLDDAIGFDKIPPPHVATLASFFARLRRYRLILSPPSSRIGVTTVDFLG 435
            +  ++LN++       +P VD +LD+L  G  +S+ +L S   Q+  D  +V LTAF +PT L+ WL MPQGA  +PSWFV V+  V   L     YLDD I FD+ P  HV  L  FF RLR+Y L LSP   R+G T  +FLG
Sbjct:  244 VNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDEDAVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKGRVGATHANFLG 388
[Close]
BLAST of mRNA_S-dermatodea_contig79755.16168.1 vs. uniprot
Match: A0A6H5KDC1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC1_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.640e-30
Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 1 
Query:    1 IQLQKLNSITKTSKIAIPGVDEVLDTLGGGSAWSVSNLLSGCSQLTMDPRSVDLTAFFSPTGLYSWLCMPQGAACAPSWFVNVMRVVTDDLRNFRMYLDDAIGFDKIPPPHVATLASFFARLRRYRLILSPPSSRIGVTTVDFLG 435
            +  ++LN++       +P VD +LD+L  G  +S+ +L S   Q+  D  +V LTAF +PT L+ WL MPQGA  +PSWFV V+  V   L     YLDD I FD+ P  HV  L  FF RLR+Y L LSP   R+G T  +FLG
Sbjct:  146 VNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKGRVGATHANFLG 290
[Close]
BLAST of mRNA_S-dermatodea_contig79755.16168.1 vs. uniprot
Match: A0A6H5JSI4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI4_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.650e-30
Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 1 
Query:    1 IQLQKLNSITKTSKIAIPGVDEVLDTLGGGSAWSVSNLLSGCSQLTMDPRSVDLTAFFSPTGLYSWLCMPQGAACAPSWFVNVMRVVTDDLRNFRMYLDDAIGFDKIPPPHVATLASFFARLRRYRLILSPPSSRIGVTTVDFLG 435
            +  ++LN++       +P VD +LD+L  G  +S+ +L S   Q+  D  +V LTAF +PT L+ WL MPQGA  +PSWFV V+  V   L     YLDD I FD+ P  HV  L  FF RLR+Y L LSP   R+G T  +FLG
Sbjct:  621 VNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKGRVGATHANFLG 765
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig79755.16168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSA0_9PHAE1.690e-3144.83Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLN7_9PHAE2.860e-3143.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KB53_9PHAE4.030e-3144.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9P3_9PHAE6.980e-3142.07Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L4V5_9PHAE1.590e-3044.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVW3_9PHAE1.970e-3044.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J9_9PHAE1.980e-3044.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8P3_9PHAE2.610e-3044.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDC1_9PHAE2.640e-3044.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JSI4_9PHAE2.650e-3044.14Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig79755contigS-dermatodea_contig79755:370..804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score90.9
Seed ortholog evalue5.3e-16
Seed eggNOG ortholog7668.SPU_017376-tr
EggNOG free text desc.retrotransposable element Tf2 155 kDa protein type 1-like
EggNOG OGs38F42@33154,COG2801@1,KOG0017@2759
COG Functional cat.G
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925311.5790083-CDS-S-dermatodea_contig79755:369..8041622925311.5790083-CDS-S-dermatodea_contig79755:369..804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig79755 370..804 +
1694079847.0956514-CDS-S-dermatodea_contig79755:369..8041694079847.0956514-CDS-S-dermatodea_contig79755:369..804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig79755 370..804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig79755.16168.1prot_S-dermatodea_contig79755.16168.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig79755 370..804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig79755.16168.1

>prot_S-dermatodea_contig79755.16168.1 ID=prot_S-dermatodea_contig79755.16168.1|Name=mRNA_S-dermatodea_contig79755.16168.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=145bp
IQLQKLNSITKTSKIAIPGVDEVLDTLGGGSAWSVSNLLSGCSQLTMDPR
SVDLTAFFSPTGLYSWLCMPQGAACAPSWFVNVMRVVTDDLRNFRMYLDD
AIGFDKIPPPHVATLASFFARLRRYRLILSPPSSRIGVTTVDFLG
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mRNA from alignment at S-dermatodea_contig79755:370..804+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig79755.16168.1 ID=mRNA_S-dermatodea_contig79755.16168.1|Name=mRNA_S-dermatodea_contig79755.16168.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at S-dermatodea_contig79755:370..804+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTCAACTACAGAAACTCAACTCAATCACGAAGACCTCGAAGATCGCCAT
CCCCGGCGTGGACGAGGTTCTCGACACGCTGGGTGGGGGCTCGGCGTGGT
CCGTTTCTAACCTCTTGTCGGGTTGTTCGCAACTCACCATGGATCCCCGC
AGCGTTGACCTAACGGCTTTTTTCTCGCCCACCGGGCTTTACAGCTGGCT
CTGCATGCCTCAAGGTGCCGCATGCGCTCCATCCTGGTTCGTCAACGTCA
TGCGTGTCGTCACCGATGACCTCCGTAACTTCCGGATGTACCTCGACGAC
GCCATCGGCTTCGACAAGATACCCCCCCCTCACGTCGCCACGCTTGCGTC
ATTTTTCGCGCGGCTCCGACGTTATCGACTTATATTGTCGCCCCCTAGTT
CCCGGATTGGTGTAACAACTGTGGACTTCCTGGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig79755:370..804+

>mRNA_S-dermatodea_contig79755.16168.1 ID=mRNA_S-dermatodea_contig79755.16168.1|Name=mRNA_S-dermatodea_contig79755.16168.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at S-dermatodea_contig79755:370..804+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTCAACTACAGAAACTCAACTCAATCACGAAGACCTCGAAGATCGCCAT
CCCCGGCGTGGACGAGGTTCTCGACACGCTGGGTGGGGGCTCGGCGTGGT
CCGTTTCTAACCTCTTGTCGGGTTGTTCGCAACTCACCATGGATCCCCGC
AGCGTTGACCTAACGGCTTTTTTCTCGCCCACCGGGCTTTACAGCTGGCT
CTGCATGCCTCAAGGTGCCGCATGCGCTCCATCCTGGTTCGTCAACGTCA
TGCGTGTCGTCACCGATGACCTCCGTAACTTCCGGATGTACCTCGACGAC
GCCATCGGCTTCGACAAGATACCCCCCCCTCACGTCGCCACGCTTGCGTC
ATTTTTCGCGCGGCTCCGACGTTATCGACTTATATTGTCGCCCCCTAGTT
CCCGGATTGGTGTAACAACTGTGGACTTCCTGGGTATTCAACTACAGAAA
CTCAACTCAATCACGAAGACCTCGAAGATCGCCATCCCCGGCGTGGACGA
GGTTCTCGACACGCTGGGTGGGGGCTCGGCGTGGTCCGTTTCTAACCTCT
TGTCGGGTTGTTCGCAACTCACCATGGATCCCCGCAGCGTTGACCTAACG
GCTTTTTTCTCGCCCACCGGGCTTTACAGCTGGCTCTGCATGCCTCAAGG
TGCCGCATGCGCTCCATCCTGGTTCGTCAACGTCATGCGTGTCGTCACCG
ATGACCTCCGTAACTTCCGGATGTACCTCGACGACGCCATCGGCTTCGAC
AAGATACCCCCCCCTCACGTCGCCACGCTTGCGTCATTTTTCGCGCGGCT
CCGACGTTATCGACTTATATTGTCGCCCCCTAGTTCCCGGATTGGTGTAA
CAACTGTGGACTTCCTGGGT
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