mRNA_S-dermatodea_contig79745.16165.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig79745.16165.1
Unique NamemRNA_S-dermatodea_contig79745.16165.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig79745.16165.1 vs. uniprot
Match: A0A8F0K175_9PHAE (Ribosomal protein S4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K175_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.800e-16
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 NIFEFCQSFRPYIRKRLLSERSYRIRYANRYKQKPIPWILTEYSSLNFMFISDIKPFLFYPYRFDLDELVSFANFGY 231
            +I EFC SFRP++   L+    +R R ++R  +    W+L +YS+L F+    IKPFLFYPYRF+LDEL+SFAN+GY
Sbjct:  160 DIVEFCPSFRPFMHDYLVYRSKFRYR-SDRLIRLSSRWVLCDYSNLFFIINGSIKPFLFYPYRFELDELISFANYGY 235
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig79745.16165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8F0K175_9PHAE3.800e-1650.65Ribosomal protein S4 n=1 Tax=Protohalopteris sp. T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig79745contigS-dermatodea_contig79745:12..245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925311.2993336-CDS-S-dermatodea_contig79745:11..2451622925311.2993336-CDS-S-dermatodea_contig79745:11..245Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig79745 12..245 +
1694079846.8973098-CDS-S-dermatodea_contig79745:11..2451694079846.8973098-CDS-S-dermatodea_contig79745:11..245Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig79745 12..245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig79745.16165.1prot_S-dermatodea_contig79745.16165.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig79745 12..245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig79745.16165.1

>prot_S-dermatodea_contig79745.16165.1 ID=prot_S-dermatodea_contig79745.16165.1|Name=mRNA_S-dermatodea_contig79745.16165.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=78bp
NIFEFCQSFRPYIRKRLLSERSYRIRYANRYKQKPIPWILTEYSSLNFMF
ISDIKPFLFYPYRFDLDELVSFANFGY*
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mRNA from alignment at S-dermatodea_contig79745:12..245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig79745.16165.1 ID=mRNA_S-dermatodea_contig79745.16165.1|Name=mRNA_S-dermatodea_contig79745.16165.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at S-dermatodea_contig79745:12..245+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATATATTTGAGTTTTGTCAATCTTTTCGTCCGTATATACGTAAGCGCCT
TTTATCTGAACGTAGTTATAGAATAAGATATGCAAATCGTTATAAACAAA
AGCCAATTCCTTGGATTTTAACTGAATATTCAAGTTTAAATTTTATGTTT
ATAAGTGACATAAAGCCCTTTTTGTTTTATCCTTATAGATTTGATTTAGA
TGAGCTTGTTTCATTTGCAAATTTTGGTTATTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig79745:12..245+

>mRNA_S-dermatodea_contig79745.16165.1 ID=mRNA_S-dermatodea_contig79745.16165.1|Name=mRNA_S-dermatodea_contig79745.16165.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig79745:12..245+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATATATTTGAGTTTTGTCAATCTTTTCGTCCGTATATACGTAAGCGCCT
TTTATCTGAACGTAGTTATAGAATAAGATATGCAAATCGTTATAAACAAA
AGCCAATTCCTTGGATTTTAACTGAATATTCAAGTTTAAATTTTATGTTT
ATAAGTGACATAAAGCCCTTTTTGTTTTATCCTTATAGATTTGATTTAGA
TGAGCTTGTTTCATTTGCAAATTTTGGTTATTAAAATATATTTGAGTTTT
GTCAATCTTTTCGTCCGTATATACGTAAGCGCCTTTTATCTGAACGTAGT
TATAGAATAAGATATGCAAATCGTTATAAACAAAAGCCAATTCCTTGGAT
TTTAACTGAATATTCAAGTTTAAATTTTATGTTTATAAGTGACATAAAGC
CCTTTTTGTTTTATCCTTATAGATTTGATTTAGATGAGCTTGTTTCATTT
GCAAATTTTGGTTATTAA
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