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Homology
BLAST of mRNA_S-dermatodea_contig13688.2129.1 vs. uniprot
Match: D8LTS1_ECTSI (Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI) HSP 1 Score: 169 bits (429), Expect = 1.470e-44 Identity = 122/204 (59.80%), Postives = 140/204 (68.63%), Query Frame = 1
Query: 85 LREKIAELEKALEGEKAAAKVAVAAAAVGAGQSGDVEMAEH------ERRDEEEMRKVLGELEAALSRERQERERAVLERDRSEELVKRMSKQLKSRGQAAA-------EDADATAITQNGGTTAVASENGDEDGDGLLAGLNNEDMMIGNLTQVLEEEREARRAAEEENTRLQREADNAMDSDRAQAKLVQNLTLELEEARKA 657
LR +A+LEK +A K AVA AA AG + E ++ +RK LGELEAALSRERQERERAVL+RDRSEEL KRMSK LK+RG +AA ED + T NG + + SENGDEDGD LL G+NNEDMMI NL+QVL+EEREARR AEEEN RLQ EAD A D+ RAQAK VQ LTLELE+ARKA
Sbjct: 1216 LRATVAKLEKEXXXXXSALKAAVAKAAGTAGGASKXXXXXXXXXXXXEEKESAFLRKQLGELEAALSRERQERERAVLDRDRSEELAKRMSKSLKNRGMSAAASAGEDGEDGGSLKGTTNG-SAVLGSENGDEDGDDLLVGMNNEDMMISNLSQVLDEEREARRTAEEENARLQTEADAATDAQRAQAKAVQTLTLELEDARKA 1418
BLAST of mRNA_S-dermatodea_contig13688.2129.1 vs. uniprot
Match: A0A6H5KVF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF9_9PHAE) HSP 1 Score: 162 bits (409), Expect = 6.620e-42 Identity = 106/152 (69.74%), Postives = 119/152 (78.29%), Query Frame = 1
Query: 229 MRKVLGELEAALSRERQERERAVLERDRSEELVKRMSKQLKSRGQAAA-------EDADATAITQNGGTTAVASENGDE--DGDGLLAGLNNEDMMIGNLTQVLEEEREARRAAEEENTRLQREADNAMDSDRAQAKLVQNLTLELEEARKA 657
+RK LGELEAALSRERQERERAVL+RDRSEEL KRMSK LK+RG +AA ED + T NG + + SENGDE DGD LL G+NNEDMMI NL+QVL+EEREARR AEEEN RLQ EAD A D+ RAQAK+VQ LTLELE+ARKA
Sbjct: 550 LRKQLGELEAALSRERQERERAVLDRDRSEELAKRMSKSLKNRGMSAAASAGEEGEDGGSPKRTTNG-SGVLGSENGDEASDGDDLLVGMNNEDMMISNLSQVLDEEREARRTAEEENARLQTEADAATDAQRAQAKVVQTLTLELEDARKA 700
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 172.6 |
| Seed ortholog evalue | 2.3e-40 |
| Seed eggNOG ortholog | 2880.D8LTS1 |
| KEGG ko | ko:K10357 |
| GOs | GO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753 |
| EggNOG free text desc. | translation initiation factor activity |
| EggNOG OGs | COG5022@1,KOG0160@2759 |
| COG Functional cat. | Z |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03019,ko03029,ko04131,ko04812 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 716 |
| Cds size | 714 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13688.2129.1 >prot_S-dermatodea_contig13688.2129.1 ID=prot_S-dermatodea_contig13688.2129.1|Name=mRNA_S-dermatodea_contig13688.2129.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=238bp
SRALASAASVSSNSASSPAGYDGEGDRLLREKIAELEKALEGEKAAAKVA VAAAAVGAGQSGDVEMAEHERRDEEEMRKVLGELEAALSRERQERERAVL ERDRSEELVKRMSKQLKSRGQAAAEDADATAITQNGGTTAVASENGDEDG DGLLAGLNNEDMMIGNLTQVLEEEREARRAAEEENTRLQREADNAMDSDR AQAKLVQNLTLELEEARKAKDKAEQSAAMAAASAAALV back to topmRNA from alignment at S-dermatodea_contig13688:283..4759- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig13688.2129.1 ID=mRNA_S-dermatodea_contig13688.2129.1|Name=mRNA_S-dermatodea_contig13688.2129.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4477bp|location=Sequence derived from alignment at S-dermatodea_contig13688:283..4759- (Saccorhiza dermatodea SderLu1190fm monoicous) TCGCGCGCCCTCGCTTCTGCAGCCTCTGTGTCGTCGAACTCCGCAAGCTC
CCCCGCTGGGTATGATGGGGAGGGTGACAGATTGCTGCGTGAAAAAATCG
CGGAGCTTGAGAAGGCCCTCGAGGGGGAGAAGGCGGCCGCGAAAGTTGCT
GTGGCTGCGGCTGCGGTGGGTGCTGGGCAGTCGGGGGACGTTGAGATGGC
GGAGCATGAGAGAAGGGACGAGGAGGAGATGAGGAAGGTTTTGGGGGAGC
TCGAAGCGGCGCTTTCTCGCGAACGGTGAGAGGGGAGAGGCAGAGAGAGA
GGGAGCCATACATGTGTTTATCTTTATTAAGTAAATACCGCTTTTACACG
CGTTTTAATAAGCGATTTAGAGTTGACCTCTCTTTGATGCCGAATTTCCT
ATTCAACTCGTGATGCCAAATGTCATAGGGATTTTAGAGTGGTACCTTAC
AGAGTAGTAGTTGGTGCCAACGCACGCACACCTCATCGGCGTAGCCGAGG
CTACCCACTATTAATAGTGTATTTTTATTACATGTACTATTTTTTGTGTT
ATCTTTATTGATCACTACAATAGCGCTTTGAACGATGTTATTAAGTGACT
AGCGGTTAGCCCCGGCTACGCCCGTGAGGTATGCGTTGGCAAGACGATAT
GTGGGTTGGGAAGGCACGGCGGTGGTATTACGGAGGGCCATAGTAATAAT
TAACAGGTCCAAATTTGCCACAAGTCTGAACCTAGAAAAACAAACACAGG
CTGAAATTACGGAGATTTCATGGTCGATGTTGTTGAATATGGCCATATCT
CGTGCTTTTTTTTGTTTTTCATGATATTTTAGTTGTTTTGTTGTTTTGTT
GTTTTGTTGTTTTGGTATCGATGGTTGGAATAGTTGGGTATTATTGGCCC
TGAGAGGTGGACCTGTTGACGTTAAAGTTAACTATGCTCCTCCGTAATAG
TACCGACGGCAGTCATTCACCCACACGGCAGTCATTCGCCCACGTGGGAG
AGGAAACCGAGTGTGCGGGGGCTCGCTGTGACAAAAGTGTATAGGTTTTA
GAGACTATCCACATACCCGACAAAACCAACCAACCAAGCCACCCGACGGA
CCCAATGTACACAAGATATCAACAAATCATGCGTGACGTCTCATCTCCGC
CAACAAAATCAGCATCAACCCATCCCACGCACCCCACCAAGCCAATGCAC
ACCAGGGAAATAAATAGCGCCGCAGGCGCTCCGGCGGGCAGCGCCGGAGA
GGCGGCCCCGGCAGGGCCCCCGGAGGGCGCATTTAACCTCAAAAAGTGGT
ATAAAATATCATTTAAAAAGCAATTTTTCAACGCCGCAGGCGTTTTCTTT
CGGCGGCAAGCCGCCGGAGGTTTTTTTTCTCAGCGGCGGTAGACGGGATT
TTTTTTGAGATTCTGGCGGCGGGGCCGCCGCCCGCAGACACCTAATTTAT
TTCCCTGGTGTTACATCAGGTATCAACAAATCATACCTGACGTCTAATGT
ACGCAAAGAAAAACCAACACCAACCCGCTAACCCCCACGCCCCCCCCCCC
CACATCCCGCACACCCCACCAAACCAACCCACACACCCGACCACCCCAAG
CACACAGGTATCAACAAAACTTATCTGGCGTCTCATCTCCGCAAATAAAT
ACCGACACCACCCCCACGCACCCCACCATCCCGCACACCTGACCTGACCA
ACAAACCGACCCACCCATTCAATTGCAGGCAAGAGCGCGAGCGCGCCGTA
CTTGAGCGAGACAGATCAGAGGAGCTCGTCAAGCGCATGTCGAAGCAGCT
CAAGAGCCGCGGGCAGGCTGCGGCCGAGGATGCCGATGCCACTGCTATCA
CTCAGAACGGTGGGACTACTGCTGTCGCATCCGAGAACGGGGACGAGGTG
ACCGCGCGGAAGGGGCGGGGGGGGGGGGGGGGCCCAAAGCACAAGTATAA
AATGAATTTCCTTGTTGAGACCCAAACAAAATAACTAGAGGCAGCCACCT
AATTAGTTTGAGGTTACACTCCATAACACAAAATATTACAANNNNNNNNN
NGGGGGGTGCTTCTCTGTCCCATCCGGGAAGGGGGGGTGGGGCCCCGGGG
GGAGGGGGGGGGGGGGGGGGGGGGGTTCAAACCTCAGGATAAAGACTCAT
GTCCTGTATGAGACCATAACCATATACTTCGGAGTAACATCATAATTCGT
ACATGATTAGACACCATAGCATCATATGTAACAACTGAGCCTCCATAGGT
GTAGCTTGGACCATGTTCTTCTTGAAAAGGTGGGACCCCGTCGCTCGCTC
TATGTTTCTGAAATCTTACTTGTTTTAGGGGGGGGGGGGGCACCCAGCAA
GTAACATTCATACAATGATCTCACAGTAGTTGCACCATACATACATACCG
TAGACCTCCACCGATTTAGCTTGGGCCGTCTTTTCCACTATAAAAGTATT
GGACCCCAACGTTCGCTCCGTGTCTTTTTGTACATTTTATTTCAACTGTT
TTGCATTGCTGGCAAGGTAATATAGTACGTGTGTATATAGGTAGGGTTGG
GTACTGGGCCAGTACACATACACACACACGCAAGCCCTCTTTTATTTCAG
AATTAGAGCAGCATTAAAATTTACCCGAGGGTATACAGTATTGATGATCA
GTATGCATACAATGAATCGTTTTTTTTTTTGTCTAATACCCCCGCCGCGG
AAAAACGCGAGAGCGTGGTGAGTAAGCATATTCCGAGAGGTGGGCGAGCT
GGGGGGAGTGCCGAACCCAATGCTTTCGCGATAAATAGCTAAAAGGTGTA
AGAACATACCGAGGATGAGAGAGATGGGATGACTCCCTTGTGACCACGGA
CGAACCTTGGATCAGCCGGTATTGCTGATTGACTGATTGGTTTTGTTGAT
TGATTGACTGATTTTATAGACTGATTTCCTGATTGATTGATTGATTGACT
GGTTGGTTGATTGATTGATTGATTGATTGATTGATTTTGTTGTTTGGCAC
ACGTATAGTCGATCGGTTTAATCCGACCCGACTTGTGGTCAGATGCACAA
CGAGCAAAATTAAAAAAATAGTGTATACCCGACTTTTTATGTTTTGATTT
TGTCAGGACGGAGACGGCCTTCTAGCGGGGCTGAACAACGAAGACATGAT
GATCGGCAACCTCACCCAAGTGCTGGAGGAAGAGAGGGAGGCCAGGAGAG
CGGCAGAGGAGGAGAACACGCGCCTTCAGCGAGAGGCAGACAGTAAGTTT
GTTTTGTGTTTTCTAGATTTTTTTTGTATACTTGATGTAGTAGACTTGCC
GTTTTTATTTTATTTTTCAGTTTTTATTCATGGGGGAAGGAGGCCAGAAA
GCCGGCAGAGGAGGAAAACTCGCGCTTTGCAGCGATAGGCATACAGTACA
AGTATTACAATTTTTTGGGGTTTTGGCTGGTTTTCCTGTTTATTGATTTT
CCGATTTTTTCGACTTCGTTCTAGGGTGTTGTCCTCGACAGACACTGAGA
GGATGTAACTCTTTCTCAAGAGTGCTCTCCACGTTAAATTATTAAGAATG
TCAATACCTAGGACGACACCTCACTACAGCTTGTGTTATGTATGGTGCCA
GGATACCATTCCGGAAATGAGCCTAGTTTTTCCTGCGCGATATCTTAGTA
CCATAGCTCTGCAAACGGTGTTGCAAACGGTGTTCTCTGTGAAACGAGAA
AATTTTTTTTGTCTCCATAACCATAAAAAAACACACACACCCCCCCACCC
ACTTTCTCCCTTTTTTTGCCAGCCTTGCGTTCTAAAGGCTCCCCCCCCCC
TTTTCCCCCCCCCCCCCCCCCCCGACCCTGTAGGACACCTGCTGAATATT
GGATTGTTGAGACGCCCTAGACAAACCATTGACTTAAGAGCGGAGTACTG
CTCATGAGAAGATTATAGTCCGAGTGTATCACACATATACTGTCGTGTAT
AATATTAATATTGTGTGCGTGCGGTGCTTTGTGCATTCGCACGGTGATCA
GAGTCCCTTTGCGGTACTTGAAGTATAGTCACGCCTACTGAATGGGCAAG
ATTTGGTTGTCCGGTATGTCTAATCAACCCATGGCACACCGTTTGGCGTC
GCAAACGCCAGCATTTTGTCTAGTAGCAGCAGCTAGCCCCATCGTTGTGA
ACCGCGGCCTAGCCTGGCCGGCGAACCCCCGGCAAATGACCCCGGCCCGG
TATTGTTGGGACGCGTAGTCTATGTCCGTATGGATACGACATGTGTTTAA
CAAAAGTAACCCCCCCCCCCCCCCCCTCCACAACCCGCCAAACCCCCTCG
GGTTTCCCCTTAATCCGGCATTGCTCCATTTTTCGTTTGTCAGATGCAAT
GGACTCTGACCGAGCGCAAGCCAAATTGGTGCAGAACCTCACGTTGGAGC
TGGAGGAGGCTCGCAAGGCTAAGGATAAGGCGGAGCAGTCGGCGGCGATG
GCGGCCGCTTCTGCCGCAGCGCTCGTG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig13688:283..4759- >mRNA_S-dermatodea_contig13688.2129.1 ID=mRNA_S-dermatodea_contig13688.2129.1|Name=mRNA_S-dermatodea_contig13688.2129.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at S-dermatodea_contig13688:283..4759- (Saccorhiza dermatodea SderLu1190fm monoicous) TCGCGCGCCCTCGCTTCTGCAGCCTCTGTGTCGTCGAACTCCGCAAGCTC CCCCGCTGGGTATGATGGGGAGGGTGACAGATTGCTGCGTGAAAAAATCG CGGAGCTTGAGAAGGCCCTCGAGGGGGAGAAGGCGGCCGCGAAAGTTGCT GTGGCTGCGGCTGCGGTGGGTGCTGGGCAGTCGGGGGACGTTGAGATGGC GGAGCATGAGAGAAGGGACGAGGAGGAGATGAGGAAGGTTTTGGGGGAGC TCGAAGCGGCGCTTTCTCGCGAACGTCGCGCGCCCTCGCTTCTGCAGCCT CTGTGTCGTCGAACTCCGCAAGCTCCCCCGCTGGGTATGATGGGGAGGGT GACAGATTGCTGCGTGAAAAAATCGCGGAGCTTGAGAAGGCCCTCGAGGG GGAGAAGGCGGCCGCGAAAGTTGCTGTGGCTGCGGCTGCGGTGGGTGCTG GGCAGTCGGGGGACGTTGAGATGGCGGAGCATGAGAGAAGGGACGAGGAG GAGATGAGGAAGGTTTTGGGGGAGCTCGAAGCGGCGCTTTCTCGCGAACG GCAAGAGCGCGAGCGCGCCGTACTTGAGCGAGACAGATCAGAGGAGCTCG TCAAGCGCATGTCGAAGCAGCTCAAGAGCCGCGGGCAGGCTGCGGCCGAG GATGCCGATGCCACTGCTATCACTCAGAACGGTGGGACTACTGCTGTCGC ATCCGAGAACGGGGACGAGGCAAGAGCGCGAGCGCGCCGTACTTGAGCGA GACAGATCAGAGGAGCTCGTCAAGCGCATGTCGAAGCAGCTCAAGAGCCG CGGGCAGGCTGCGGCCGAGGATGCCGATGCCACTGCTATCACTCAGAACG GTGGGACTACTGCTGTCGCATCCGAGAACGGGGACGAGGACGGAGACGGC CTTCTAGCGGGGCTGAACAACGAAGACATGATGATCGGCAACCTCACCCA AGTGCTGGAGGAAGAGAGGGAGGCCAGGAGAGCGGCAGAGGAGGAGAACA CGCGCCTTCAGCGAGAGGCAGACAGACGGAGACGGCCTTCTAGCGGGGCT GAACAACGAAGACATGATGATCGGCAACCTCACCCAAGTGCTGGAGGAAG AGAGGGAGGCCAGGAGAGCGGCAGAGGAGGAGAACACGCGCCTTCAGCGA GAGGCAGACAATGCAATGGACTCTGACCGAGCGCAAGCCAAATTGGTGCA GAACCTCACGTTGGAGCTGGAGGAGGCTCGCAAGGCTAAGGATAAGGCGG AGCAGTCGGCGGCGATGGCGGCCGCTTCTGCCGCAGCGCTCGTGATGCAA TGGACTCTGACCGAGCGCAAGCCAAATTGGTGCAGAACCTCACGTTGGAG CTGGAGGAGGCTCGCAAGGCTAAGGATAAGGCGGAGCAGTCGGCGGCGAT GGCGGCCGCTTCTGCCGCAGCGCTCGTG back to top
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