mRNA_S-dermatodea_contig1357.2073.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1357.2073.1
Unique NamemRNA_S-dermatodea_contig1357.2073.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1357.2073.1 vs. uniprot
Match: D7FV81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV81_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 9.020e-95
Identity = 162/247 (65.59%), Postives = 185/247 (74.90%), Query Frame = 1 
Query:  421 DAKKAMEVQSIGPFENHGGCELRLVNVTATANMKCPINLRDVVAKARNAQYNPRRFSACIIRLINKGKPTATALVFKTGKVVVTGAKSDDAVDYVCSGFASILDKV-----GTSQKIVFNPRDDVKVQNMVATTDVGFPIRLEGLVQGRHGPFCNYEPELFPGLIYRLQVPKICVLIFVSGKVVLTGAKSAKQLEDAFKCMYPVLCSAKKETVLVRTPAAKGT-------------SSGQARKKRKT 1107
            +A+ AM  Q IGPFENHG C+L +VNVTATA+MKC I+L+ VV +ARNA+YNP+RFSACIIRLINK +P ATALVFKTGKVVVTG++S+ +VDY C  FA IL K+     G S KI F+   D +VQNMVATTDVGFPIRLEGLV    G FCNYEPELFPGLIYR++ PKIC LIFVSGKVVLTGAKSA+QLED FK MYP LC  KK TVL++T A   T             SS  ARKK KT
Sbjct:  112 EAQTAMRAQVIGPFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVLLQTSATARTANAAXXXXXXXXSSSEPARKKTKT 358
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BLAST of mRNA_S-dermatodea_contig1357.2073.1 vs. uniprot
Match: F0YMS8_AURAN (Uncharacterized protein GTF n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMS8_AURAN)

HSP 1 Score: 192 bits (488), Expect = 3.660e-53
Identity = 106/205 (51.71%), Postives = 139/205 (67.80%), Query Frame = 1 
Query:  457 PFENHGGCELRLVNVTATANMKCPINLRDVVAKARNAQYNPRRFSACIIRLINKGKPTATALVFKTGKVVVTGAKSDDAVDYVCSGFASILDKVGTSQKIVFNPRDDVKVQNMVATTDVGFPIRLEGLVQGRHGPFCNYEPELFPGLIYRLQVPKICVLIFVSGKVVLTGAKSAKQLEDAFKCMYPVLCSAKKETVL--VRTPAA 1065
            P+ +  G  + + NV AT N++  I+LR +   ARNA+YNP++F+A I+R+    +P  TALVF TGK+V+TGAKS+DA       FA+I+ K+G   K       + KVQNMVAT+D GFPIRLE LV   H  F +YEPELFPGLIYRL +PK  +L+FVSG++VLTG KS   L  AF+ MYPVL   KKE++   VR+PAA
Sbjct:   39 PWSHPSGATIDVQNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRV---REPRCTALVFSTGKMVITGAKSEDAARRGARKFAAIIRKIGFQPKF-----GEFKVQNMVATSDAGFPIRLEALVYA-HAKFSSYEPELFPGLIYRLVIPKTVLLLFVSGRMVLTGGKSLGHLRTAFEKMYPVLTEFKKESLPYEVRSPAA 234
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BLAST of mRNA_S-dermatodea_contig1357.2073.1 vs. uniprot
Match: A0A058ZD66_FONAL (Transcription initiation factor TFIID TATA-box-binding protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZD66_FONAL)

HSP 1 Score: 185 bits (470), Expect = 2.980e-51
Identity = 98/187 (52.41%), Postives = 129/187 (68.98%), Query Frame = 1 
Query:  475 GCELRLVNVTATANMKCPINLRDVVAKARNAQYNPRRFSACIIRLINKGKPTATALVFKTGKVVVTGAKSDDAVDYVCSGFASILDKVGTSQKIVFNPRDDVKVQNMVATTDVGFPIRLEGLVQGRHGPFCNYEPELFPGLIYRLQVPKICVLIFVSGKVVLTGAKSAKQLEDAFKCMYPVLCSAKK 1035
            G   +L N+ A+ N+ C + LRD+  KARNA+YNPRRFSA I+R+    +P  TALVF +GK+VVTGAKS++   +    F  I+ K G   K+ FN   D  +QN+V + DV FPIRLEGL Q  HG   NY+PELFPGLI+R+  PK+ +LIFVSGK+VLTGAK  +++E AF+ +YPVL   KK
Sbjct:   43 GIRPQLQNIVASLNLNCALQLRDIATKARNAEYNPRRFSAVIMRI---REPKTTALVFASGKMVVTGAKSENESQFAARKFMRIIQKCGF--KVDFN---DFTIQNVVGSCDVRFPIRLEGL-QNTHGSSSNYDPELFPGLIFRMHDPKVVLLIFVSGKIVLTGAKRCEEIEQAFERIYPVLLEYKK 220
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BLAST of mRNA_S-dermatodea_contig1357.2073.1 vs. uniprot
Match: UPI000023525A (TF22_MAIZE Transcription initiation factor TFIID-2 (TATA-box factor 2) (TATA sequence-binding protein 2) (TBP-2) n=1 Tax=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) TaxID=227321 RepID=UPI000023525A)

HSP 1 Score: 183 bits (465), Expect = 1.160e-50
Identity = 99/195 (50.77%), Postives = 133/195 (68.21%), Query Frame = 1 
Query:  490 LVNVTATANMKCPINLRDVVAKARNAQYNPRRFSACIIRLINKGKPTATALVFKTGKVVVTGAKSDDAVDYVCSGFASILDKVGTSQKIVFNPRDDVKVQNMVATTDVGFPIRLEGLVQGRHGPFCNYEPELFPGLIYRLQVPKICVLIFVSGKVVLTGAKSAKQLEDAFKCMYPVLCSAKKETVLVRTPAAKGT 1074
            L N+ AT N+ C ++L+ +   ARNA+YNP+RF+A I+R+    +P  TAL+F +GK+VVTGAKS+D        +A I+ K+G + K       D K+QN+V + D+ FPIRLEGL   RH  F +YEPELFPGLIYR+  PKI +LIFVSGK+VLTGAK  +++  AF+ +YPVL S K  T  +RTPA  GT
Sbjct:   22 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRI---REPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFT-----DFKIQNIVGSCDIKFPIRLEGLAS-RHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVL-SGKLPTFDIRTPANFGT 206
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BLAST of mRNA_S-dermatodea_contig1357.2073.1 vs. uniprot
Match: A0A6A4VTJ8_AMPAM (TATA-box-binding protein n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VTJ8_AMPAM)

HSP 1 Score: 185 bits (470), Expect = 2.730e-50
Identity = 100/196 (51.02%), Postives = 131/196 (66.84%), Query Frame = 1 
Query:  451 IGPFENHGGCELRLVNVTATANMKCPINLRDVVAKARNAQYNPRRFSACIIRLINKGKPTATALVFKTGKVVVTGAKSDDAVDYVCSGFASILDKVGTSQKIVFNPRDDVKVQNMVATTDVGFPIRLEGLVQGRHGPFCNYEPELFPGLIYRLQVPKICVLIFVSGKVVLTGAKSAKQLEDAFKCMYPVLCSAKKE 1038
            + P  N  G   +L N+ +T NM C ++LR +  +ARNA+YNP+RF+A I+R+    +P  TAL+F +GK+V TGAKS+D        +A I+ K+G   K       D KVQNMV + DV FPIRLEGLV   H  F +YEPELFPGLIYR+  P+I +LIFVSGKVVLTGAK  +Q+ DAF  +YP+L S KK+
Sbjct:  110 LNPASNDPGIVPQLQNIVSTINMLCKLDLRKIAMQARNAEYNPKRFAAVIMRI---REPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFDAKFA-----DFKVQNMVGSCDVKFPIRLEGLVL-THNQFSSYEPELFPGLIYRMVQPRIVLLIFVSGKVVLTGAKVRQQIYDAFDNIYPILRSYKKQ 296
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BLAST of mRNA_S-dermatodea_contig1357.2073.1 vs. uniprot
Match: A0A5C5G0V3_9BASI (Uncharacterized protein (Fragment) n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G0V3_9BASI)

HSP 1 Score: 181 bits (458), Expect = 3.610e-50
Identity = 93/175 (53.14%), Postives = 122/175 (69.71%), Query Frame = 1 
Query:  496 NVTATANMKCPINLRDVVAKARNAQYNPRRFSACIIRLINKGKPTATALVFKTGKVVVTGAKSDDAVDYVCSGFASILDKVGTSQKIVFNPRDDVKVQNMVATTDVGFPIRLEGLVQGRHGPFCNYEPELFPGLIYRLQVPKICVLIFVSGKVVLTGAKSAKQLEDAFKCMYPVL 1020
            N+ AT N++C ++L+ +   ARNA+YNP+RF+A I+R+    +P  TALVF +GKVVVTGAKS+D        FA I+ K+G   K       D K+QN+V + DV FPIRLEGL  G HG F +YEPELFPGLIYR+  PK+ +LIFVSGK+VLTGAK  +++  AF  +YPVL
Sbjct:    2 NIVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRI---REPKTTALVFASGKVVVTGAKSEDDSRLAARKFARIIQKLGFETKFT-----DFKIQNIVGSCDVKFPIRLEGLAYG-HGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKFREEIYQAFAAIYPVL 167
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BLAST of mRNA_S-dermatodea_contig1357.2073.1 vs. uniprot
Match: A0A1D2AC59_AUXPR (Uncharacterized protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AC59_AUXPR)

HSP 1 Score: 181 bits (460), Expect = 1.120e-49
Identity = 97/192 (50.52%), Postives = 132/192 (68.75%), Query Frame = 1 
Query:  487 RLVNVTATANMKCPINLRDVVAKARNAQYNPRRFSACIIRLINKGKPTATALVFKTGKVVVTGAKSDDAVDYVCSGFASILDKVGTSQKIVFNPRDDVKVQNMVATTDVGFPIRLEGLVQGRHGPFCNYEPELFPGLIYRLQVPKICVLIFVSGKVVLTGAKSAKQLEDAFKCMYPVLCSAKKETVLVRTPA 1062
            +L NV AT N++C ++L+D+  +ARNA+YNP+RF+A I+R+    +P +TAL+F +GK+V TGAKS+         +A IL K+     ++F    + K+QNMV + DV FPIRLEGL    H  FC+YEPELFPGLIYR+  PKI +LIFVSGKVVLTGAK  +++  AF+ +YPVL   KK  +L   PA
Sbjct:   25 QLQNVVATVNLECKLDLKDIALRARNAEYNPKRFAAVIMRI---REPKSTALIFASGKMVCTGAKSEQESRLAARKYARILQKL--ENPVIFK---EFKIQNMVGSCDVRFPIRLEGLASS-HSVFCSYEPELFPGLIYRMVDPKIVLLIFVSGKVVLTGAKRREEIYQAFENIYPVLKEFKKGGLLESVPA 207
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BLAST of mRNA_S-dermatodea_contig1357.2073.1 vs. uniprot
Match: A0A2G2YW92_CAPAN (TATA-box-binding protein n=4 Tax=Capsicum TaxID=4071 RepID=A0A2G2YW92_CAPAN)

HSP 1 Score: 180 bits (456), Expect = 1.200e-49
Identity = 90/185 (48.65%), Postives = 127/185 (68.65%), Query Frame = 1 
Query:  490 LVNVTATANMKCPINLRDVVAKARNAQYNPRRFSACIIRLINKGKPTATALVFKTGKVVVTGAKSDDAVDYVCSGFASILDKVGTSQKIVFNPRDDVKVQNMVATTDVGFPIRLEGLVQGRHGPFCNYEPELFPGLIYRLQVPKICVLIFVSGKVVLTGAKSAKQLEDAFKCMYPVLCSAKKETV 1044
            L N+ +T N+ C ++L+ +  +A+NA+YNP+RF A I+R+    +P  TAL+F TGKVVVTGAK++    Y    +A I+ K+G    + F    D K+QN+VA+ DVGFPIRLEGL    HG F +YEPE+FPGLIYR++ PKI +L+F SGK+V+TGAK  + +  AF  +YPVL    K+T+
Sbjct:   13 LQNIASTVNLDCKLDLKGIALQAQNAEYNPKRFPAVIMRV---KEPKTTALIFATGKVVVTGAKNEGDAKYAARKYARIVQKIGCHLGVKFK---DFKIQNIVASCDVGFPIRLEGLALA-HGAFSSYEPEIFPGLIYRMKQPKIVMLVFTSGKIVITGAKVREDIYTAFDSIYPVLTQFSKKTL 190
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BLAST of mRNA_S-dermatodea_contig1357.2073.1 vs. uniprot
Match: A0A8D8LLC4_9HEMI (TATA-box-binding protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8LLC4_9HEMI)

HSP 1 Score: 183 bits (465), Expect = 1.310e-49
Identity = 95/192 (49.48%), Postives = 133/192 (69.27%), Query Frame = 1 
Query:  463 ENHGGCELRLVNVTATANMKCPINLRDVVAKARNAQYNPRRFSACIIRLINKGKPTATALVFKTGKVVVTGAKSDDAVDYVCSGFASILDKVGTSQKIVFNPRDDVKVQNMVATTDVGFPIRLEGLVQGRHGPFCNYEPELFPGLIYRLQVPKICVLIFVSGKVVLTGAKSAKQLEDAFKCMYPVLCSAKKE 1038
            ++ GG   +L N+ +T N+ C ++L+ +   ARNA+YNP+RF+A I+R+    +P  TAL+F +GK+V TGAKS++        +A I+ K+G   K +     D K+QNMV + DV FPIRLEGLV   HG F +YEPELFPGLIYR+  P+I +LIFVSGKVVLTGAK  +++ +AF C+YP+L S KK+
Sbjct:  111 QDMGGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI---REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-----DFKIQNMVGSCDVKFPIRLEGLVL-THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDCIYPILKSFKKQ 293
[Close]
BLAST of mRNA_S-dermatodea_contig1357.2073.1 vs. uniprot
Match: A0A8I6RJL8_CIMLE (Uncharacterized protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RJL8_CIMLE)

HSP 1 Score: 182 bits (463), Expect = 2.770e-49
Identity = 97/194 (50.00%), Postives = 131/194 (67.53%), Query Frame = 1 
Query:  457 PFENHGGCELRLVNVTATANMKCPINLRDVVAKARNAQYNPRRFSACIIRLINKGKPTATALVFKTGKVVVTGAKSDDAVDYVCSGFASILDKVGTSQKIVFNPRDDVKVQNMVATTDVGFPIRLEGLVQGRHGPFCNYEPELFPGLIYRLQVPKICVLIFVSGKVVLTGAKSAKQLEDAFKCMYPVLCSAKKE 1038
            P  +  G   +L N+ +T N+ C ++L+ +   ARNA+YNP+RF+A IIR+    +P  TAL+F +GK+V TGAKS+D        +A I+ K+G   K +     D KVQNMV + DV FPIRLEGLV   HG F +YEPELFPGLIYR+  P+I +LIFVSGKVVLTGAK  +++ +AF  +YP+L S KK+
Sbjct:  112 PTSSEPGITPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIIRI---REPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFQAKFL-----DFKVQNMVGSCDVKFPIRLEGLVL-THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVCREIYEAFDNIYPILKSFKKQ 296
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1357.2073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV81_ECTSI9.020e-9565.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0YMS8_AURAN3.660e-5351.71Uncharacterized protein GTF n=1 Tax=Aureococcus an... [more]
A0A058ZD66_FONAL2.980e-5152.41Transcription initiation factor TFIID TATA-box-bin... [more]
UPI000023525A1.160e-5050.77TF22_MAIZE Transcription initiation factor TFIID-2... [more]
A0A6A4VTJ8_AMPAM2.730e-5051.02TATA-box-binding protein n=3 Tax=Amphibalanus amph... [more]
A0A5C5G0V3_9BASI3.610e-5053.14Uncharacterized protein (Fragment) n=1 Tax=Rhodoto... [more]
A0A1D2AC59_AUXPR1.120e-4950.52Uncharacterized protein n=3 Tax=Auxenochlorella pr... [more]
A0A2G2YW92_CAPAN1.200e-4948.65TATA-box-binding protein n=4 Tax=Capsicum TaxID=40... [more]
A0A8D8LLC4_9HEMI1.310e-4949.48TATA-box-binding protein n=1 Tax=Cacopsylla melano... [more]
A0A8I6RJL8_CIMLE2.770e-4950.00Uncharacterized protein n=1 Tax=Cimex lectularius ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1357contigS-dermatodea_contig1357:11776..16459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.1
Seed ortholog evalue1.3e-79
Seed eggNOG ortholog2880.D7FV81
KEGG koko:K03120
KEGG Pathwayko03022,ko05016,ko05165,ko05166,ko05168,ko05169,ko05203,map03022,map05016,map05165,map05166,map05168,map05169,map05203
GOsGO:0000126,GO:0000428,GO:0000976,GO:0000977,GO:0000979,GO:0000981,GO:0000983,GO:0000988,GO:0000989,GO:0000995,GO:0001012,GO:0001016,GO:0001046,GO:0001047,GO:0001067,GO:0001075,GO:0001085,GO:0001091,GO:0001092,GO:0001098,GO:0001099,GO:0001102,GO:0001134,GO:0001179,GO:0001186,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005672,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006359,GO:0006360,GO:0006366,GO:0006367,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008301,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015074,GO:0016043,GO:0016070,GO:0016072,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019904,GO:0022607,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032196,GO:0032774,GO:0032991,GO:0033613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070893,GO:0070897,GO:0070898,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0090576,GO:0097159,GO:0097659,GO:0097718,GO:0098781,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.DNA-templated transcription, initiation
EggNOG OGsCOG2101@1,KOG3302@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta2-adaptin/TBP, C-terminal domain
Ec32 orthologEc-14_000120.1
Exons5
Model size1825
Cds size816
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924289.876539-UTR-S-dermatodea_contig1357:11775..124721622924289.876539-UTR-S-dermatodea_contig1357:11775..12472Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1357 11776..12472 -
1694079154.2926168-UTR-S-dermatodea_contig1357:11775..124721694079154.2926168-UTR-S-dermatodea_contig1357:11775..12472Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1357 11776..12472 -
1622924289.8865662-UTR-S-dermatodea_contig1357:12761..127791622924289.8865662-UTR-S-dermatodea_contig1357:12761..12779Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1357 12762..12779 -
1694079154.3028471-UTR-S-dermatodea_contig1357:12761..127791694079154.3028471-UTR-S-dermatodea_contig1357:12761..12779Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1357 12762..12779 -
1622924289.952128-UTR-S-dermatodea_contig1357:16165..164591622924289.952128-UTR-S-dermatodea_contig1357:16165..16459Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1357 16166..16459 -
1694079154.3553185-UTR-S-dermatodea_contig1357:16165..164591694079154.3553185-UTR-S-dermatodea_contig1357:16165..16459Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1357 16166..16459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924289.8969553-CDS-S-dermatodea_contig1357:12779..129381622924289.8969553-CDS-S-dermatodea_contig1357:12779..12938Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1357 12780..12938 -
1694079154.3115191-CDS-S-dermatodea_contig1357:12779..129381694079154.3115191-CDS-S-dermatodea_contig1357:12779..12938Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1357 12780..12938 -
1622924289.9098806-CDS-S-dermatodea_contig1357:13620..138071622924289.9098806-CDS-S-dermatodea_contig1357:13620..13807Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1357 13621..13807 -
1694079154.320832-CDS-S-dermatodea_contig1357:13620..138071694079154.320832-CDS-S-dermatodea_contig1357:13620..13807Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1357 13621..13807 -
1622924289.9239445-CDS-S-dermatodea_contig1357:14326..144931622924289.9239445-CDS-S-dermatodea_contig1357:14326..14493Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1357 14327..14493 -
1694079154.3309505-CDS-S-dermatodea_contig1357:14326..144931694079154.3309505-CDS-S-dermatodea_contig1357:14326..14493Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1357 14327..14493 -
1622924289.9404302-CDS-S-dermatodea_contig1357:15862..161651622924289.9404302-CDS-S-dermatodea_contig1357:15862..16165Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1357 15863..16165 -
1694079154.3420622-CDS-S-dermatodea_contig1357:15862..161651694079154.3420622-CDS-S-dermatodea_contig1357:15862..16165Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1357 15863..16165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1357.2073.1prot_S-dermatodea_contig1357.2073.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1357 12780..16165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1357.2073.1

>prot_S-dermatodea_contig1357.2073.1 ID=prot_S-dermatodea_contig1357.2073.1|Name=mRNA_S-dermatodea_contig1357.2073.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=272bp
MSQASTKDAVGSSSGPGSGSGSGSGSGSGSNPEVVCRSGKTVDAKKAMEV
QSIGPFENHGGCELRLVNVTATANMKCPINLRDVVAKARNAQYNPRRFSA
CIIRLINKGKPTATALVFKTGKVVVTGAKSDDAVDYVCSGFASILDKVGT
SQKIVFNPRDDVKVQNMVATTDVGFPIRLEGLVQGRHGPFCNYEPELFPG
LIYRLQVPKICVLIFVSGKVVLTGAKSAKQLEDAFKCMYPVLCSAKKETV
LVRTPAAKGTSSGQARKKRKT*
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mRNA from alignment at S-dermatodea_contig1357:11776..16459-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1357.2073.1 ID=mRNA_S-dermatodea_contig1357.2073.1|Name=mRNA_S-dermatodea_contig1357.2073.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4684bp|location=Sequence derived from alignment at S-dermatodea_contig1357:11776..16459- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAAAAAGGCAAAAGGCAAAAGTTCCTCACACCCCCACAGCATCTATACCC
CAGGCACTGCCACTTGCCAGCAAAGCAATCAACCGCCGTGGCCACACCGC
AGGGATCCACTCTCACTGCTGGACGTCAGGGCGCCCTCCCGGCAGGGACA
GAGGGCGGCCACGAAGGCGACCACGGTGAACAGCTCCTTCTCTCTACTTG
TATTCAACAAATCGACAGCCAGCCTGTGCTTGGTGCTCGTGGTACAGCTG
TAACGTCGATCGTCGCACAGCCAGCATTCATCAGTGAGAGTGACATGTCA
CAGGCCTCGACCAAGGATGCCGTGGGGTCCAGCTCTGGCCCTGGCTCTGG
CTCTGGCTCTGGATCAGGATCAGGGTCAGGGTCCAACCCTGAAGTGGTTT
GCAGAAGCGGCAAGACGGTGGATGCGAAGAAGGCGATGGAGGTGCAGAGC
ATAGGGCCATTCGAGAACCACGGGGGATGCGAGCTGCGATTAGTGAACGT
AACAGCCACGGCCAACATGAAGTGCCCCATCAACCTCAGGGACGTCGTGG
CAAAGGCGCGCAACGCGCAGTACAACCCCAGGCGCTTCTCTGCGTGCGTG
AGTACCCTTTAGCTCACAAATAGCCTTATCGGTCCACTGGAATTGCACCA
ATCCAGTAAGTGCAAGTACAAGAAGTAGAGAGTAGCGTCCATGGGTTGCT
TGAAGGATCTGCAGCTCATCAACTCACCAGCGCCCTTGTTTTGAAATTGC
CATTTACTGCTCCTTCCAGGCCCTTCACTACTGCTGTACTAGAAGTATTA
ATAGTCCAGGCCTCGCTCTAGTCCACGCCTCGCTCAATCGGGTACGCACT
ACGTCCGCCACACACAAGCGGAGGTTGACACATGCATATCACACGTAGAG
TACACGGTACACCCGACCTGCAGTGTTTTATCATCATGGTACGTGAGGAC
CTCCTCTGGCCCCGGTCTCTGGTGAGTGAGGTAGTCTTTATATACAAGTA
CCAGTTCAAGATGAGCCAAACCACCCAACGGCGGCGTTCGACACAGGGTG
ATGAGGTGCAGAATGGCCGTGTTATCATATGGTGTGTACACATCACATAC
TACACGCATTGCGAGGTCTCTTGTATAGTACGCTCAGCCACTTAACGGGA
ACGGACCCGTTTATTTTTCATATAGAAACAGAACACAGAAAGTGTACAAT
CCACAACTCATCGGGACAAGACCTGGGTGGACTTTGTTGTATCATACTTG
GTTCACTAAATTGAGACGATTCCACGGCCATCCGAAGGAAACTATCCTTA
CACAGTGGTGGAACATGATCCAGGCGACTCCTCAAGTACAATACTCGGCT
CAGCAGCATGTACCCCGGCGAACCCACAGTCATGCCTCCGCGCGCGTGCT
ACAGTACCACATTTACTCCAAGGGAACACGTAGATGAGCTGTTGCAGTAG
AGCTACCATATGGCTCAAAAGAGAACGTTACAAAACACTTTTACTTGACC
CAGTATGATATGTCCAAGAACCAAGAACGGATATCTGCTATATTTGGAAC
ACCACTAGGAACGGGAGCAAGAGGAGGGAGAATTCCCGTGGGGTACCATG
AGTGGTGCATTCAAGCTTTGAGTCGGACGTGATGTGTCTTATTTGCTCAG
TACTGCTGTACCAGAAGAACCCGCCCTAGCTCGTGGCCTCATGATCGCGT
TTTGCGGCCCTCTGTCGTGCTGCCGCTGCATGAGCCTCCACACTACTGTA
TGATACACACGGTCGTGCCTTGATTGATTTTATCGATTGATTTTATCACG
TATGATCACATAGCCGATCCGCTCATTCCGACGAGACTTACTTGTGTTTA
GATGTTAGATTCGAAAGACGACACTGATGGACTTATTGACTTATTGGGGC
TTTGCACCTTGCACCTTGCACCTTTGCCGCTGCGACGCGAACTCTTTGCA
ACTCCGGGGCAACCAGATCATCCGCCTCATCAACAAGGGGAAGCCGACGG
CAACAGCTCTGGTTTTCAAGACCGGGAAGGTGGTGGTGACGGGGGCGAAG
AGCGATGATGCTGTCGACTACGTGTGCTCGGGGTTTGCGTCCATCTTGGA
CAAGGTCGGCACTTCCCAGAAGATTGTCTTCAAGTGAGCGGCCTCCAAAT
GTAGTTGGAGAACCATGCAGTTCTTCGTTGCCGAAAATGATCCCTTCGTT
GTTCCGCCAACGATGCGCCATTGTTTGTGTCATATCTCCCCTAGTGTCGA
TGCTGTAGGCGGACCGAGGTTTCGCGAATCCACCCCGTAATGCTCTCCTG
TGCGATCCACCTTGTACTGGAACTGCTGGGGGCTTCCATGTGATCGCGAA
CGATAGTTATCCAATTGCCTACGGTAATAAAAGCGAGACCAGACTTCAGC
GACGTCGTGTCGCCGCCCATATATCAGCTTCGCAGGGTCTGATGTGCGCT
TCTTGCTCCAGCAGTGTCGCCGTTACCGGGCACTCGCTTGGGCACCTCTC
GTTGGACGATTGTCCCCCTTTGGGCGATCTTCGGGACGTCACACTTCCTC
ATCGATTGCAGCGTGCAGGTACACGGAGACTGACGTTTCTTTCTCCCGAC
CTCCCTTGCTGCACTGAAATGTTGTCGTCTTTCCCGCTTCCGATCACTCA
AGCCCGAGGGATGACGTGAAGGTGCAGAACATGGTGGCGACGACGGACGT
TGGGTTCCCGATTCGCCTGGAAGGTCTGGTACAAGGGCGACACGGACCCT
TTTGCAACTACGAGCCCGAGCTGTTTCCCGGGCTGATATACCGCCTGCAA
GTCCCCAAGATATGCGTGCTCATCTTCGTGTCCGGCAAGGTACGCGGTTT
TACAGCTGCGTTTTTAGTTCCAGGGGTGTTGGGCCAGAGGAGAAGCAATG
CTTCACATCAAGTGATACCGATCATAGATGAGGGGGCGGTGGGTGTGGAA
GCTTGTCTTCGAAGACCGCCAAGGAGGACTAGTCCTGCAACTGCGTTCGG
CACGGACTCGGAAAGGGACTGCATAGCGATCGAGTGTCGTTTTATTGGCT
ACCTTTGGACATGTCACGATACAGCAGTGTTGACGCACTCGCTGTGATTA
TTCCGGCCGTCTGTCAAGTTTGCAGTGGCCCCACGGGAGACCCCGACCCT
TCTCCTTTATGCGTGCCGTTTCACGCCAAGCAGCTGCCTTCGTTGCACCA
TTCGGCTCTCGCTTCGGCAAAATATTGGCATCGCAGGAGCCGTAATTGTG
GGTGTGGAGGGAGCTACAATAGCGATTCGTTATGTTCTAATACTTTGACA
TGCCCTCGCCACCTTCCGGGCCCCGGCTGAATTGATGACAATCAAGATGG
CCGTTCAAAGCCACTTTTCGGTCTTGCTGGTTGCGCTTTCACGATCGACT
TGGCACCGCTTTTGTTCGGCGATAGTGTTCACCTCAACCACTTCCCTTCC
CTCCGACGGGCGATGTTGGGCGCCCCCGCCTACCCCGCCTACCAAATCAT
GTTCGTTTGTTCCGCTGAAAGGTGGTGCTGACAGGGGCCAAGAGCGCCAA
GCAGCTGGAAGACGCCTTCAAGTGCATGTACCCCGTCCTGTGTTCGGCTA
AGAAGGAAACAGTGCTCGTGAGAACCCCGGCTGCCAAAGGCACGTCCAGT
GGACAAGCGCGCAAGAAGCGCAAGACGTGACGCACCGACCAGGACGTGGT
GAGTTAGTTCTCTAAGTTGCCTTCGGTAAGGTACATCATCGTGCCTACTC
TGTCGCCCGGGTATCTGCGCTGCAGTCATTGCGACCTGTGAGTTGCGGAG
AGTTATTCGCAATCCGCGATCACCGCTCATGCTTCCTGCAACGTATTTTG
TAGCTCTTGGCACTGTTGGAGCCAAAGCTCGAGCTCCCCTCGGGTGCCTC
CAACCCAAGCATTTCCTAGCAGCTGAATGCGCCGCCGGCTCTGCGTCTGA
CCTGTCGTGGCATTTGCTCTTCCGTGCATCACATCAGGTTCAGCCTGGAG
CTCATCCAGCTTTGGCGGTAGTTATCCAGTGGCGTTTTAGCACCTGCATC
TGATGCCGGTGGATCCTACCTGGCGCTTTGTAATAGCCGGGGGGTTGTTT
GGCCGTGGGTTCTTGCTGGCGATGATCTCGTCTACAGGGATGCCGGGGTA
TTGTCCATTAAAGATTCGATCCCCGGGGCACCATCGGTCTCATTGGCTGC
AAATAATTATTTTTGACATTGGACGGGGTTGGAAGTGTCCTAAGGTAGCG
AAAGATTGTTGTGGGTCGTGATGACCCCAAAAATAAATTGGTGGGCTACA
GTTGCTACTGAAAAAGAGAGGTGTTGCCTTGGACAGCGGGGTGCCACATT
TTTGACACATCGCTCTTGGAAAATCGGAGGTGGGGAGTGGGACAAAGTGG
ACTCATCAATCCATGGAATTTTTGTTGGTGTCATGTTTCTATAGCTTTGA
AGCTCATGTTGATGTGTGTTTGTTGAAACCCAGTATAATAGCGCTGTGGG
CAAGGAATCGTGAAGTATTAATATTAACACTTATAAAGGGAAGGGCAAAG
GTGGAAGTGATGTGGCGGGTTGAGTTGCGATACATGTGCAAGTACGCACT
CGCCCGCACGTAAGCCGCGCATGGCGATGTGCGGTTCGTGTTGCAGTGGT
GTGTTTGTTGGTTAGCCTCTTCAAATGGGATGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1357:11776..16459-

>mRNA_S-dermatodea_contig1357.2073.1 ID=mRNA_S-dermatodea_contig1357.2073.1|Name=mRNA_S-dermatodea_contig1357.2073.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at S-dermatodea_contig1357:11776..16459- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCACAGGCCTCGACCAAGGATGCCGTGGGGTCCAGCTCTGGCCCTGG
CTCTGGCTCTGGCTCTGGATCAGGATCAGGGTCAGGGTCCAACCCTGAAG
TGGTTTGCAGAAGCGGCAAGACGGTGGATGCGAAGAAGGCGATGGAGGTG
CAGAGCATAGGGCCATTCGAGAACCACGGGGGATGCGAGCTGCGATTAGT
GAACGTAACAGCCACGGCCAACATGAAGTGCCCCATCAACCTCAGGGACG
TCGTGGCAAAGGCGCGCAACGCGCAGTACAACCCCAGGCGCTTCTCTGCG
TGCATGTCACAGGCCTCGACCAAGGATGCCGTGGGGTCCAGCTCTGGCCC
TGGCTCTGGCTCTGGCTCTGGATCAGGATCAGGGTCAGGGTCCAACCCTG
AAGTGGTTTGCAGAAGCGGCAAGACGGTGGATGCGAAGAAGGCGATGGAG
GTGCAGAGCATAGGGCCATTCGAGAACCACGGGGGATGCGAGCTGCGATT
AGTGAACGTAACAGCCACGGCCAACATGAAGTGCCCCATCAACCTCAGGG
ACGTCGTGGCAAAGGCGCGCAACGCGCAGTACAACCCCAGGCGCTTCTCT
GCGTGCATCATCCGCCTCATCAACAAGGGGAAGCCGACGGCAACAGCTCT
GGTTTTCAAGACCGGGAAGGTGGTGGTGACGGGGGCGAAGAGCGATGATG
CTGTCGACTACGTGTGCTCGGGGTTTGCGTCCATCTTGGACAAGGTCGGC
ACTTCCCAGAAGATTGTCTTCAAATCATCCGCCTCATCAACAAGGGGAAG
CCGACGGCAACAGCTCTGGTTTTCAAGACCGGGAAGGTGGTGGTGACGGG
GGCGAAGAGCGATGATGCTGTCGACTACGTGTGCTCGGGGTTTGCGTCCA
TCTTGGACAAGGTCGGCACTTCCCAGAAGATTGTCTTCAACCCGAGGGAT
GACGTGAAGGTGCAGAACATGGTGGCGACGACGGACGTTGGGTTCCCGAT
TCGCCTGGAAGGTCTGGTACAAGGGCGACACGGACCCTTTTGCAACTACG
AGCCCGAGCTGTTTCCCGGGCTGATATACCGCCTGCAAGTCCCCAAGATA
TGCGTGCTCATCTTCGTGTCCGGCAAGCCCGAGGGATGACGTGAAGGTGC
AGAACATGGTGGCGACGACGGACGTTGGGTTCCCGATTCGCCTGGAAGGT
CTGGTACAAGGGCGACACGGACCCTTTTGCAACTACGAGCCCGAGCTGTT
TCCCGGGCTGATATACCGCCTGCAAGTCCCCAAGATATGCGTGCTCATCT
TCGTGTCCGGCAAGGTGGTGCTGACAGGGGCCAAGAGCGCCAAGCAGCTG
GAAGACGCCTTCAAGTGCATGTACCCCGTCCTGTGTTCGGCTAAGAAGGA
AACAGTGCTCGTGAGAACCCCGGCTGCCAAAGGCACGTCCAGTGGACAAG
CGCGCAAGAAGCGCAAGACGTGAGTGGTGCTGACAGGGGCCAAGAGCGCC
AAGCAGCTGGAAGACGCCTTCAAGTGCATGTACCCCGTCCTGTGTTCGGC
TAAGAAGGAAACAGTGCTCGTGAGAACCCCGGCTGCCAAAGGCACGTCCA
GTGGACAAGCGCGCAAGAAGCGCAAGACGTGA
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