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Homology
BLAST of mRNA_S-dermatodea_contig13501.2043.1 vs. uniprot
Match: A0A6H5KYE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYE6_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.280e-38 Identity = 159/473 (33.62%), Postives = 186/473 (39.32%), Query Frame = 3
Query: 132 LFAAAALDLIMVLHARIPSNYGSKSNPISGTGVSEKIEGAAA---------APVPAAKGREETAAPLTTAAKMLSATAVSPRSQ----AETVGVDDLNRRDG---REKVGGSRLADLDAWMVILRALSLGASSRQKEVGMHALQLLTKAMLDGQAEKAPPEVLQAVMLTIVFPLGSRVWHRESRDM---GWGSSRWRRPQGSISRASSGRGSHTAEDDRWPPDLTDDGFELVEAPDVGPSPEPGLPHPTATEPAVGAGSSSAMRRQFSGEGGVWDDGKLEGEDSGRASAAGRGDD------------------------------------GGVQLSSPALLALLLVFKSFLKHLSSLRRSGGFFEVWRGFLCCIETLLASEGSAPPALVDGAVTGLGAVLGEMHREGMFALNEDDAAGNDA---------------------VEARTWAFTRAKVPGFGCCPGLLSDIFEVG 1322
+FA AALDL+MVLHAR+PS++ + +PV +K +AA + +A A RS A T D R DG R + L DAWM+ILRALSLGA S V HALQLLTK MLD A +APP+VLQ ML++V PL W R +RD G S R G Q+SS ALLALLL+ KSFLKHLS+LRR F EVW FLCC+E LL +EG+APP LVDGAVTGLGAV+GEM EG+FA AA DA VE WAFTRAKVP FGCCP LL +FE G
Sbjct: 1 MFAGAALDLLMVLHARLPSSFKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVALSKPTATSAAFEAVQEERSTAAASCGRSXXXXXAATARADRGARCDGGCRRPQGAAPGLVATDAWMMILRALSLGAGSEDLMVASHALQLLTKVMLDDLAAEAPPDVLQDAMLSVVLPLARHAWRRVARDTAARGGTSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSRQVSSLALLALLLMLKSFLKHLSALRRGDQFCEVWCQFLCCLEILLGTEGNAPPTLVDGAVTGLGAVVGEMIGEGLFAFAVAAAATADAASPAGQRTGDGGAGQRHSGGEVEEAVWAFTRAKVPQFGCCPDLLRRVFEEG 473
BLAST of mRNA_S-dermatodea_contig13501.2043.1 vs. uniprot
Match: D8LRA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA4_ECTSI) HSP 1 Score: 114 bits (286), Expect = 9.950e-26 Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 3
Query: 954 DDGGVQLSSPALLALLLVFKSFLKHLSSLRRSGGFFEVWRGFLCCIETLLASEGSAPPALVDGAVTGLGAVLGEMHREGMFA 1199
D G +SSPALLALLL+ KSFLKHLS+LRR F EVWR FLCC+E LL +EG+APP LVDGAVTGLGAV+GEM EG+FA
Sbjct: 68 DVGSRPVSSPALLALLLMLKSFLKHLSALRRGDRFCEVWRQFLCCLEILLGTEGNAPPTLVDGAVTGLGAVVGEMIGEGLFA 149
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-06_003260.1 |
| Exons | 4 |
| Model size | 1784 |
| Cds size | 1293 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13501.2043.1 >prot_S-dermatodea_contig13501.2043.1 ID=prot_S-dermatodea_contig13501.2043.1|Name=mRNA_S-dermatodea_contig13501.2043.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=431bp
MVLHARIPSNYGSKSNPISGTGVSEKIEGAAAAPVPAAKGREETAAPLTT
AAKMLSATAVSPRSQAETVGVDDLNRRDGREKVGGSRLADLDAWMVILRA
LSLGASSRQKEVGMHALQLLTKAMLDGQAEKAPPEVLQAVMLTIVFPLGS
RVWHRESRDMGWGSSRWRRPQGSISRASSGRGSHTAEDDRWPPDLTDDGF
ELVEAPDVGPSPEPGLPHPTATEPAVGAGSSSAMRRQFSGEGGVWDDGKL
EGEDSGRASAAGRGDDGGVQLSSPALLALLLVFKSFLKHLSSLRRSGGFF
EVWRGFLCCIETLLASEGSAPPALVDGAVTGLGAVLGEMHREGMFALNED
DAAGNDAVEARTWAFTRAKVPGFGCCPGLLSDIFEVGGGVTPPSGGVAAV
SVAARSDGGDTGTAVEFRVGCAEQDGGGAP* back to topmRNA from alignment at S-dermatodea_contig13501:2026..5136- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig13501.2043.1 ID=mRNA_S-dermatodea_contig13501.2043.1|Name=mRNA_S-dermatodea_contig13501.2043.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3111bp|location=Sequence derived from alignment at S-dermatodea_contig13501:2026..5136- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGACTCTCCTGCCCGTGGAGGGCGTTACGGCCTGCGTTTCAGCGTTCTTC
ATCGACCGAGGTCAGCCCGTGTCTGAGAACGCCGACGCCCACGCCGGTAG
CACCAACAACAGCAGCATCGAATGCACGAATCTCTTCGCCGCTGCGGCCC
TCGACCTTATCATGGTGCTGCACGCGCGCATCCCTTCCAACTACGGCAGC
AAGAGCAACCCTATCTCCGGCACCGGGGTGTCCGAGAAGATCGAAGGCGC
AGCAGCGGCCCCGGTACCGGCCGCGAAGGGCAGGGAAGAGACCGCTGCAC
CGTTAACCACCGCCGCGAAAATGCTATCTGCAACGGCCGTTTCGCCACGC
TCTCAGGCGGAGACCGTGGGCGTAGATGATCTCAATCGGCGGGACGGTAG
AGAAAAGGTAGGTGGGAGCCGCTTGGCCGACCTGGATGCCTGGATGGTCA
TCTTAAGGGCGCTGTCGCTCGGAGCGAGCAGCCGGCAGAAGGAGGTCGGG
ATGCATGCACTGCAGCTGCTCACGAAGGTTCGTTCTGAACGCGCGGGCCG
CTTGTCGGTCGAGCACTTGAAGGTCGATTGCGAGTGATGAGCCGGGCGGC
TGATAGATGACGCATCACATTACCGGCGTTCCCGCACTCGAGCAAAAATC
GCGCTCTTGCAACGCCAGTTTTTTCCTTTGTTTTTTTTAAGGTTTGTGGG
TTGCGTCTGGCTTCGCATCGTAACTCCTTCTTTTCCATCCGCCTGCTTTC
AGCGTCCGGTCTCCCCGTCGACATTTCGTTGGTGGGAAAACGATGGAAAT
AACGTGTGACCGACAATTGCAACCAAAACCTCAACCCAACCTCTCCTTTG
TAACAAATTCCAGGCTATGCTGGATGGTCAAGCTGAAAAAGCGCCGCCTG
AAGTTCTGCAAGCGGTTATGCTGACCATCGTATTCCCCCTGGGATCGCGC
GTGTGGCACCGAGAAAGCCGGGACATGGGGTGGGGGTCGTCTCGGTGGCG
GCGGCCGCAAGGCAGCATCAGTCGAGCCAGCAGCGGTCGCGGTAGCCATA
CCGCCGAAGATGATCGGTGGCCACCAGATCTCACGGACGACGGCTTTGAG
CTAGTGGAAGCCCCAGATGTCGGTCCATCGCCCGAGCCCGGGTTGCCGCA
CCCCACCGCAACGGAACCCGCGGTCGGTGCCGGCAGCTCGTCGGCTATGC
GGCGCCAGTTTTCGGGCGAGGGGGGGGTCTGGGACGATGGGAAATTGGAG
GGGGAAGACAGCGGGCGGGCGTCCGCAGCGGGGCGGGGCGATGACGGCGG
TGTACAGCTCTCCAGCCCGGCATTACTTGCCCTGTTGCTGGTATTTAAAT
CGTTTTTGAAGCACCTGTCTTCGCTCCGTCGATCCGGAGGGTTCTTCGAG
GTCTGGCGTGGGGTGAGCCTGGTGTTGTATTCGTTTTGGCGTACCCTCCG
GTGTGTGGGTCTGATTTGCAAAGTCTTGCGGCGGTTGGACGCTTTGCTGA
TGTTGACATGGTGTACTTGCGGCACGAGAGGCGGTGCCCTCGCTGCTGTT
CTAAGCGCAGCGCTTAGAAATACCAGCGTGCTTGAAATGGAGGCTTTGCT
ACTGTTCATATGCCGCGGGCGCCGCGCCTCGCTCACCCGGCGGCCCTTCC
CGTTGTATAGTCGTCCTTGGTCGACCTTTTGTGGCATGCACCCTTTTTTT
TATGCTCACGCTCGATCCAGTTCGTTACCTCACTACTTTCACAAGTTGGA
ACATCATTTGCTACATGCAGATGTGTGTGTATTCGCAGTGTTGACGTGAT
CCCGTGATCCACAATCTGCCGGTACAGGTTATATAAAAATCTCCGGCCTC
ATGCCCTGTAACAACTCCCTTCAAACCCCGTTGTTCAGGCATTTTCAACG
TTGTTTCACCCCGTACCCCCCGCCGCCACAATTTTTTTTTTCAGTTTTTG
TGCTGCATAGAGACTCTCCTCGCATCCGAAGGGAGCGCACCACCGGCGCT
GGTGGATGGGGCCGTCACCGGCCTCGGGGCCGTGCTTGGCGAGATGCACC
GAGAAGGGATGTTTGCTTTGGTGAGAAAGAAAACGAGAGCTGATTTTGTC
CCCCTTCATAAAACGCCCCATCGGTGATTGGATGGGCAGACTCCATGATC
GCGTACCGTAGGCGTCCACCGGTAGTAGCGAAGATGTTCCGCTGGGATTT
TTGTACGCAGGCGCCGTAATTCGACGGAAGCTTCACCGAGTCGTATGCGT
CGTGCTGTAATAAACCAGAATTATACCCACGGGATTAGGAGCATTGGGGC
TCGCTTCCCGTTCGACCGCTATTGCCTTGCCGCAGACCCTGGTGCGCTGC
AACACCCCGTGGTAATTCTTCTCGGTCAAACGTGTTTCGTTACAGCGAGG
CACGACCACGTCACTCAAAACGTCAACGGCCCGTTCCCGCCCACGCTCGC
TTAGCTGGGCTGTCCTGGTAGTTAGCTAAATGAGAGTTCCGTTGTCTGTG
TCCCCTGCCACGAATCGGAATATATACAGAATGAAGACGATGCAGCAGGA
AACGATGCCGTAGAAGCGAGAACATGGGCCTTCACTCGCGCCAAGGTGCC
TGGCTTTGGATGCTGCCCAGGGCTTCTCAGTGATATTTTCGAGGTAGGTG
GCGGAGTCACCCCGCCATCTGGAGGCGTGGCAGCCGTGTCTGTTGCTGCG
CGGAGCGACGGCGGGGACACCGGGACGGCAGTGGAATTCCGAGTAGGTTG
TGCTGAACAGGATGGAGGCGGCGCGCCGTAGAACCTCTTCGCTGGGAGCC
AGCCACTCCATCCGAGTTGTGTGGGTGTGTGGGGCGGCGTACCCGCCCGT
GTCGAAGAGCGTCAAAAACAGATGATTGGGTTTTTCACCTATCACCTCTA
CGCTCGTGCCATTTTTGGAGACCAGTGCCAGAGGCAGATAAATACGTTAC
CATTTTACACTCGAGTACGATGCAATTAGTCGGTAGGGGGCGGTCCAAAC
CGTGCTTCATGGTGCCGGCGCGGACCGATCGTTTGTTCCAAAGTGTGGCC
TACGTGTTGAGACGTATTTTTCGCATAGTTATTGCGCGCACTTTGTGCCG
TGCTGCTCTGT back to topCoding sequence (CDS) from alignment at S-dermatodea_contig13501:2026..5136- >mRNA_S-dermatodea_contig13501.2043.1 ID=mRNA_S-dermatodea_contig13501.2043.1|Name=mRNA_S-dermatodea_contig13501.2043.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2586bp|location=Sequence derived from alignment at S-dermatodea_contig13501:2026..5136- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGCTGCACGCGCGCATCCCTTCCAACTACGGCAGCAAGAGCAACCC
TATCTCCGGCACCGGGGTGTCCGAGAAGATCGAAGGCGCAGCAGCGGCCC
CGGTACCGGCCGCGAAGGGCAGGGAAGAGACCGCTGCACCGTTAACCACC
GCCGCGAAAATGCTATCTGCAACGGCCGTTTCGCCACGCTCTCAGGCGGA
GACCGTGGGCGTAGATGATCTCAATCGGCGGGACGGTAGAGAAAAGGTAG
GTGGGAGCCGCTTGGCCGACCTGGATGCCTGGATGGTCATCTTAAGGGCG
CTGTCGCTCGGAGCGAGCAGCCGGCAGAAGGAGGTCGGGATGCATGCACT
GCAGCTGCTCACGAAGATGGTGCTGCACGCGCGCATCCCTTCCAACTACG
GCAGCAAGAGCAACCCTATCTCCGGCACCGGGGTGTCCGAGAAGATCGAA
GGCGCAGCAGCGGCCCCGGTACCGGCCGCGAAGGGCAGGGAAGAGACCGC
TGCACCGTTAACCACCGCCGCGAAAATGCTATCTGCAACGGCCGTTTCGC
CACGCTCTCAGGCGGAGACCGTGGGCGTAGATGATCTCAATCGGCGGGAC
GGTAGAGAAAAGGTAGGTGGGAGCCGCTTGGCCGACCTGGATGCCTGGAT
GGTCATCTTAAGGGCGCTGTCGCTCGGAGCGAGCAGCCGGCAGAAGGAGG
TCGGGATGCATGCACTGCAGCTGCTCACGAAGGCTATGCTGGATGGTCAA
GCTGAAAAAGCGCCGCCTGAAGTTCTGCAAGCGGTTATGCTGACCATCGT
ATTCCCCCTGGGATCGCGCGTGTGGCACCGAGAAAGCCGGGACATGGGGT
GGGGGTCGTCTCGGTGGCGGCGGCCGCAAGGCAGCATCAGTCGAGCCAGC
AGCGGTCGCGGTAGCCATACCGCCGAAGATGATCGGTGGCCACCAGATCT
CACGGACGACGGCTTTGAGCTAGTGGAAGCCCCAGATGTCGGTCCATCGC
CCGAGCCCGGGTTGCCGCACCCCACCGCAACGGAACCCGCGGTCGGTGCC
GGCAGCTCGTCGGCTATGCGGCGCCAGTTTTCGGGCGAGGGGGGGGTCTG
GGACGATGGGAAATTGGAGGGGGAAGACAGCGGGCGGGCGTCCGCAGCGG
GGCGGGGCGATGACGGCGGTGTACAGCTCTCCAGCCCGGCATTACTTGCC
CTGTTGCTGGTATTTAAATCGTTTTTGAAGCACCTGTCTTCGCTCCGTCG
ATCCGGAGGGTTCTTCGAGGTCTGGCGTGGGGCTATGCTGGATGGTCAAG
CTGAAAAAGCGCCGCCTGAAGTTCTGCAAGCGGTTATGCTGACCATCGTA
TTCCCCCTGGGATCGCGCGTGTGGCACCGAGAAAGCCGGGACATGGGGTG
GGGGTCGTCTCGGTGGCGGCGGCCGCAAGGCAGCATCAGTCGAGCCAGCA
GCGGTCGCGGTAGCCATACCGCCGAAGATGATCGGTGGCCACCAGATCTC
ACGGACGACGGCTTTGAGCTAGTGGAAGCCCCAGATGTCGGTCCATCGCC
CGAGCCCGGGTTGCCGCACCCCACCGCAACGGAACCCGCGGTCGGTGCCG
GCAGCTCGTCGGCTATGCGGCGCCAGTTTTCGGGCGAGGGGGGGGTCTGG
GACGATGGGAAATTGGAGGGGGAAGACAGCGGGCGGGCGTCCGCAGCGGG
GCGGGGCGATGACGGCGGTGTACAGCTCTCCAGCCCGGCATTACTTGCCC
TGTTGCTGGTATTTAAATCGTTTTTGAAGCACCTGTCTTCGCTCCGTCGA
TCCGGAGGGTTCTTCGAGGTCTGGCGTGGGTTTTTGTGCTGCATAGAGAC
TCTCCTCGCATCCGAAGGGAGCGCACCACCGGCGCTGGTGGATGGGGCCG
TCACCGGCCTCGGGGCCGTGCTTGGCGAGATGCACCGAGAAGGGATGTTT
GCTTTGTTTTTGTGCTGCATAGAGACTCTCCTCGCATCCGAAGGGAGCGC
ACCACCGGCGCTGGTGGATGGGGCCGTCACCGGCCTCGGGGCCGTGCTTG
GCGAGATGCACCGAGAAGGGATGTTTGCTTTGAATGAAGACGATGCAGCA
GGAAACGATGCCGTAGAAGCGAGAACATGGGCCTTCACTCGCGCCAAGGT
GCCTGGCTTTGGATGCTGCCCAGGGCTTCTCAGTGATATTTTCGAGGTAG
GTGGCGGAGTCACCCCGCCATCTGGAGGCGTGGCAGCCGTGTCTGTTGCT
GCGCGGAGCGACGGCGGGGACACCGGGACGGCAGTGGAATTCCGAGTAGG
TTGTGCTGAACAGGATGGAGGCGGCGCGCCGTAGAATGAAGACGATGCAG
CAGGAAACGATGCCGTAGAAGCGAGAACATGGGCCTTCACTCGCGCCAAG
GTGCCTGGCTTTGGATGCTGCCCAGGGCTTCTCAGTGATATTTTCGAGGT
AGGTGGCGGAGTCACCCCGCCATCTGGAGGCGTGGCAGCCGTGTCTGTTG
CTGCGCGGAGCGACGGCGGGGACACCGGGACGGCAGTGGAATTCCGAGTA
GGTTGTGCTGAACAGGATGGAGGCGGCGCGCCGTAG back to top
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