mRNA_S-dermatodea_contig13254.1935.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13254.1935.1
Unique NamemRNA_S-dermatodea_contig13254.1935.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13254.1935.1 vs. uniprot
Match: D7FLU5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU5_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.830e-22
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:   55 EETRYVDSTITHLGDPIGGCYEVSTGLLNGFPVYMLGGAELVKGTSWLYVTFEGTWHIVMIIGLDADTGYVSQMDTICSATDYQADEL----TGPTDPLLDGGWLC 360
            E+T +VDS IT+LG PIGGCY+++T LL GFP Y LGG     G +W+YV+  G+W I  +  +D  TG VS +  +C++    A +      GPT   LDG W C
Sbjct:   61 EDTVFVDSLITNLGYPIGGCYDMATTLLRGFPFYALGGGA-AAGDAWIYVSTAGSWEIGTVDEVDDSTGGVSSLSAVCTSEGLLAADFPEGDNGPTSSQLDGAWQC 165
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13254.1935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLU5_ECTSI1.830e-2244.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13254contigS-dermatodea_contig13254:3086..4783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size425
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13254.1935.1prot_S-dermatodea_contig13254.1935.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13254 3086..4781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924279.767196-CDS-S-dermatodea_contig13254:3085..32981622924279.767196-CDS-S-dermatodea_contig13254:3085..3298Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13254 3086..3298 +
1694079146.7754726-CDS-S-dermatodea_contig13254:3085..32981694079146.7754726-CDS-S-dermatodea_contig13254:3085..3298Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13254 3086..3298 +
1622924279.7754006-CDS-S-dermatodea_contig13254:4087..42321622924279.7754006-CDS-S-dermatodea_contig13254:4087..4232Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13254 4088..4232 +
1694079146.7857149-CDS-S-dermatodea_contig13254:4087..42321694079146.7857149-CDS-S-dermatodea_contig13254:4087..4232Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13254 4088..4232 +
1622924279.7835593-CDS-S-dermatodea_contig13254:4716..47811622924279.7835593-CDS-S-dermatodea_contig13254:4716..4781Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13254 4717..4781 +
1694079146.7978826-CDS-S-dermatodea_contig13254:4716..47811694079146.7978826-CDS-S-dermatodea_contig13254:4716..4781Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13254 4717..4781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13254.1935.1

>prot_S-dermatodea_contig13254.1935.1 ID=prot_S-dermatodea_contig13254.1935.1|Name=mRNA_S-dermatodea_contig13254.1935.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=141bp
RFPPACLTLVPTRLFGKQEETRYVDSTITHLGDPIGGCYEVSTGLLNGFP
VYMLGGAELVKGTSWLYVTFEGTWHIVMIIGLDADTGYVSQMDTICSATD
YQADELTGPTDPLLDGGWLCSYFQDGVTNYEVAADFKEVEC
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mRNA from alignment at S-dermatodea_contig13254:3086..4783+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13254.1935.1 ID=mRNA_S-dermatodea_contig13254.1935.1|Name=mRNA_S-dermatodea_contig13254.1935.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1698bp|location=Sequence derived from alignment at S-dermatodea_contig13254:3086..4783+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGTTCCCACCAGCATGTTTAACCCTGGTGCCCACACGTCTGTTTGGAAA
GCAGGAGGAAACGCGTTATGTAGATTCTACTATCACCCATTTGGGTGACC
CCATCGGGGGATGCTACGAGGTGTCGACTGGTTTATTGAACGGGTTCCCT
GTCTATATGCTAGGAGGCGCCGAGCTGGTGAAAGGGACATCTTGGCTTTA
CGTCACGTTTGAGGTGCGTGCCGTTGTGTTACTGCAGTGCACACTGCTTG
GGTTGCCGTCTCTTGTTTTCATACAGGTGGCAGGGTAGAAAGGGAGCTGT
TATTTAATCACCGGTGCTTGTACAAGGAAGGGCTGTAGGGAACAATTGGG
CGAACCATGGGCGCGCAAAATGACAGGATTATTGAATGTCAACAACAAGA
AAAAATTGTTCTTCTCCCGACTGGAAGCAAACAGTGTTTTTTCTCAATTA
TAAGCCGACGAGCCTGGACGCAGCGAAAACGCTGGATAACCGGGACATAA
ACCTTACATGCCTCCACGCGGCTAGTCTCCGGCTGCAGTTGTTGCGCTAC
GGACTATCGCCCAATACCTAGAGAAACGCGCGAAAAAGATCGCCAGAGCA
CAGCCCGGACCTACATGTAGGCCGTTGTAGGTCGAAGTACCCTCCTGCTA
CGTATGTTTGTATGTCCTGGCACAAAGGCGTCTTTGGCGATATTCCTGCA
CAACGATCATGACGCAGTTTTGTGCCCTCGTCCACTACTGCTGTCCATCA
TCGCTTGCCTCATACTGTACATGCATAGATACATCTAAATCACGCGCTTG
GTTTTAGTATACCATCACGGATACATGCATGCGCAGCACCGCCGTCGTTT
TGGGTGCCACTTGCCTTTGGGGGGTGGGTTTTGCTTGACAAGAGAAGAAG
ATGCCCGTCTCTCTCTCTCTCTCGTTGCTCCCTTCCAACCTCCCCTCCCT
TCCCACACACCCCTTCCACCGCCCGGTTCCCAACAACACTCTTGGCGACC
AGGGAACATGGCATATTGTGATGATAATCGGACTCGACGCCGACACCGGA
TACGTATCCCAGATGGACACGATTTGCTCGGCGACCGACTACCAGGCCGA
TGAGCTTACGGGGCCGACGGACCCCCTTCTTGACGGCGGTTGGTTATGTA
AGTATTGCCGCTGGAAGACCACGGCACGGCGGTGGGTCGATGAAAAGGGG
AATATGAGTGAGGGTTGTACAGGTATCTGAATCCTTTCGTATACTTCGAA
GTATACGATCAACAAAATGTCAGCGTTGTCGGGACACTGACCTAAATCTC
TCTATGTGGTAGTTGACCCGCGCATGAAATCCGCGAAGCTGGGCAACAGG
TTTCATGAGTGCTTCACCTATAGAGCACAGACGGATTGGATCCACCGCTG
CTTTCGAACTACCACTTACTGTCTTGTGTGTATTCGAGTTTTGGCCTCTC
TCGGGCTGCTTTAATTTTGTTATCCACCGCTTTCCTGGAGATGCGATACA
AAAACGACCCCAAAAGCTCCGAACCTACCCGTCGATAACAACATAACTGG
ACGAACAAATATTTCGAAGGAGAACAGAAACACTCGCTCCGCGTGTGCCT
GTTTTGCCAAAAAATCACTTAAATGTTCCAGGCAGCTATTTCCAGGACGG
AGTCACCAACTACGAGGTCGCGGCGGACTTTAAGGAGGTGGAGTGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13254:3086..4783+

>mRNA_S-dermatodea_contig13254.1935.1 ID=mRNA_S-dermatodea_contig13254.1935.1|Name=mRNA_S-dermatodea_contig13254.1935.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at S-dermatodea_contig13254:3086..4783+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGTTCCCACCAGCATGTTTAACCCTGGTGCCCACACGTCTGTTTGGAAA
GCAGGAGGAAACGCGTTATGTAGATTCTACTATCACCCATTTGGGTGACC
CCATCGGGGGATGCTACGAGGTGTCGACTGGTTTATTGAACGGGTTCCCT
GTCTATATGCTAGGAGGCGCCGAGCTGGTGAAAGGGACATCTTGGCTTTA
CGTCACGTTTGAGCGGTTCCCACCAGCATGTTTAACCCTGGTGCCCACAC
GTCTGTTTGGAAAGCAGGAGGAAACGCGTTATGTAGATTCTACTATCACC
CATTTGGGTGACCCCATCGGGGGATGCTACGAGGTGTCGACTGGTTTATT
GAACGGGTTCCCTGTCTATATGCTAGGAGGCGCCGAGCTGGTGAAAGGGA
CATCTTGGCTTTACGTCACGTTTGAGGGAACATGGCATATTGTGATGATA
ATCGGACTCGACGCCGACACCGGATACGTATCCCAGATGGACACGATTTG
CTCGGCGACCGACTACCAGGCCGATGAGCTTACGGGGCCGACGGACCCCC
TTCTTGACGGCGGTTGGTTATGGAACATGGCATATTGTGATGATAATCGG
ACTCGACGCCGACACCGGATACGTATCCCAGATGGACACGATTTGCTCGG
CGACCGACTACCAGGCCGATGAGCTTACGGGGCCGACGGACCCCCTTCTT
GACGGCGGTTGGTTATGCAGCTATTTCCAGGACGGAGTCACCAACTACGA
GGTCGCGGCGGACTTTAAGGAGGTGGAGTGCGCAGCTATTTCCAGGACGG
AGTCACCAACTACGAGGTCGCGGCGGACTTTAAGGAGGTGGAGTGC
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