mRNA_S-dermatodea_contig13025.1831.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13025.1831.1
Unique NamemRNA_S-dermatodea_contig13025.1831.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13025.1831.1 vs. uniprot
Match: A0A836CFA8_9STRA (CwfJ C-terminus 1-domain-containing protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFA8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.680e-31
Identity = 58/105 (55.24%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:    4 PAVPIYFFEPGASESLASKLEENTSEVQEVAENLFYLGRGGIKTVGKLTVAFLGSNHKPEDMDNCRKVSAMGGYGGADILLSSEWGRGMEVDLPERCFEELRAAG 318
            P +P YFFEPG S  LA  L+++ ++VQE+A +LFYLGRGGI+TVGKLTVAFL   H PED++  R  +  GGY GAD+LL+SEW RG + DLP+     L++ G
Sbjct:   67 PPIPTYFFEPGDSALLAPLLQQHDTDVQELAPDLFYLGRGGIRTVGKLTVAFLSETHTPEDLEAARTNANRGGYRGADVLLTSEWPRGFDADLPDAAIAHLKSVG 171
[Close]
BLAST of mRNA_S-dermatodea_contig13025.1831.1 vs. uniprot
Match: A0A6H5KVH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 7.020e-28
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 PPAVPIYFFEPGASESLASKLEENTSEVQEVAENLFYLGRGGIKTVGKLTVAFLGSNHKPEDMDNCRKVSAMGGYGGADILLSSEWGRGMEVDLPERCFEELRAAG 318
            PPAVP+YFFE G SESL++KLEE+    Q+VA NLFYLGRGGIKTVGKLTVAFL ++HKP+ ++                       +GMEVDLPERCF+EL A G
Sbjct:   63 PPAVPVYFFEAGGSESLSAKLEEHP--FQQVASNLFYLGRGGIKTVGKLTVAFLSTSHKPDGVE----------------------AKGMEVDLPERCFQELSAGG 144
[Close]
BLAST of mRNA_S-dermatodea_contig13025.1831.1 vs. uniprot
Match: D8LD91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD91_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 3.180e-22
Identity = 55/105 (52.38%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:    1 PPAVPIYFFEPGASESLASKLEENTSEVQEVAENLFYLGRGGIKTVGKLTVAFLGSNHKPEDMDNCRKVSAMGGYGGADILLSSEWGRGMEVDLPERCFEELRAA 315
            PPAVP+YFFE G SESL++KLEE+            YL                         ++CRKVSAM GYGGAD+LLS+EWGRGMEVDLPERCF+EL AA
Sbjct:   30 PPAVPVYFFEAGGSESLSAKLEEHP-----------YL-------------------------ESCRKVSAMAGYGGADLLLSTEWGRGMEVDLPERCFQELSAA 98
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13025.1831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CFA8_9STRA5.680e-3155.24CwfJ C-terminus 1-domain-containing protein-like p... [more]
A0A6H5KVH2_9PHAE7.020e-2856.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD91_ECTSI3.180e-2252.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13025contigS-dermatodea_contig13025:1297..4363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue2.4e-18
Seed eggNOG ortholog2880.D8LD91
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.DNA binding
EggNOG OGsKOG2476@1,KOG2476@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size318
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13025.1831.1prot_S-dermatodea_contig13025.1831.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13025 1297..4363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924271.5154166-CDS-S-dermatodea_contig13025:1296..14301622924271.5154166-CDS-S-dermatodea_contig13025:1296..1430Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13025 1297..1430 -
1694079140.588623-CDS-S-dermatodea_contig13025:1296..14301694079140.588623-CDS-S-dermatodea_contig13025:1296..1430Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13025 1297..1430 -
1622924271.5261505-CDS-S-dermatodea_contig13025:2320..24281622924271.5261505-CDS-S-dermatodea_contig13025:2320..2428Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13025 2321..2428 -
1694079140.6073802-CDS-S-dermatodea_contig13025:2320..24281694079140.6073802-CDS-S-dermatodea_contig13025:2320..2428Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13025 2321..2428 -
1622924271.5346186-CDS-S-dermatodea_contig13025:4287..43631622924271.5346186-CDS-S-dermatodea_contig13025:4287..4363Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13025 4288..4363 -
1694079140.6165023-CDS-S-dermatodea_contig13025:4287..43631694079140.6165023-CDS-S-dermatodea_contig13025:4287..4363Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13025 4288..4363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13025.1831.1

>prot_S-dermatodea_contig13025.1831.1 ID=prot_S-dermatodea_contig13025.1831.1|Name=mRNA_S-dermatodea_contig13025.1831.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
PPAVPIYFFEPGASESLASKLEENTSEVQEVAENLFYLGRGGIKTVGKLT
VAFLGSNHKPEDMDNCRKVSAMGGYGGADILLSSEWGRGMEVDLPERCFE
ELRAAG
back to top

mRNA from alignment at S-dermatodea_contig13025:1297..4363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13025.1831.1 ID=mRNA_S-dermatodea_contig13025.1831.1|Name=mRNA_S-dermatodea_contig13025.1831.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3067bp|location=Sequence derived from alignment at S-dermatodea_contig13025:1297..4363- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCCGGCGGTGCCTATCTACTTTTTTGAGCCGGGGGCTTCGGAGAGCCT
CGCGTCGAAGCTCGAAGAGAACACCTGTAAGTCAAGTCAAGTCAAGTCAA
GTCAAGAGAGGGCCACGGACATGCCACGGCTGCGATTGGGGACAAGAATC
AGACGTAAATTGTTAAACTCTCGCGTGACAAAAACGCCGGCCTTCTATAA
TAAATGCCGCGTACGTTGTACTGAGAGTTGTTTTCGTGTGTTATCAATGG
CGTTTTGCAATTGTGTTTAAGGATTCTTTTCGATAGCCGAAAGGCGACGT
TTAGCGGACGTTTGGGTCCCCTCCATCATTCTGTGAGCTATCATATACAG
TACACAAGTCCGTTTAACCCTTTTCGAACAGAGTTCATTTTCAGGCCATC
TGCCCCGCGCAGTATACTAGTATTTCACACTCAACAGCAGTATTGTACTT
GTAACGAATCGGAGGCTCCTCCTCGCCGCTGTGGAAGGTATCGTACTGGT
GGAGGTGGAAAACTGATTAATTACCAACCGCGCTTAGCCTGCCTGCCTGC
CTGCCTGCCGATGCACTTTTGCGTGCAGTAGACTTTGACAAGTGGTAGAC
AAAATAAATTTCCTGCGTTCTTTAGTGGCTAAGGCTGACAGACTGTCTGC
GTGGTCGGAATGTAGTCGCAATGGCCGTCGAGGAAATTTAAGGAAATTCG
GCTGAAACGTGGCTCCGCCGCAGCCGCGTTTGGGCGCTACAGGCCTCGGA
TGAAGGCTCTGAGGGCGCTATGGGTTAGGGTTAGGGTTAACGTTAGGGTT
AGGGTTAGGGTGGATTGGGTAGACGCCCCGGGGGGGGGGGGCGTGCCAGC
GCTTCACAAAACACAAAACACAATTGTATTTTTGAAAAACTTAGCTGGGT
TATCGTAAATTTCTCGGAAATTATTCCTGTCTAACGAAGTGGTAAAGTCC
CCTCTGCGCGGGTACGTATGTACTGCTGTACCCGTCGCCGCCATCACCCG
CAGTTTGTACTTGTAACGATTATCGGCGCAAAAATGTACTCAGTTCCAAA
GGGGTTAGGAGGAGGGAGCGAGGGTTTGGCCCCGGCGCCTCCTTAACCCT
TTCGGTAGTACAGCATTATCTGTATGAATTGATGTCGGTTTGCACCTTTT
CTTATTGCGATTTAGAGTTGATTTTTCTGCACAAAATAGTAGACATTTAG
ATTTGAGCGGTGAAACACTTAAAATTGAAGCCAAAAAGTCATACTGATTT
CAGAGGAGGGGGCATTATAAACAAGTGTTGAAAATAATAGTATTTTGCAC
CCCGCGGGTGTAACCGTGGCTAACCTGCTACTGTAGTATAGGTTATTAAT
AGGGCTCTCCGAAACGATAAAAAAAAACGCTCGACGCCAGTCGACAGCTA
GAGCCCCGCTTCCCGTGGGCTCCGTTCTCTCTCGTTCCTGCTTCACAGGC
CATGGGGTTCCCCAGGTCTCCGCTCCAAGCACGACTCATTCCGTGCTAAC
CGGCGCTCCAAGCAGGGGGCTACTGTAGTACCAACAGGGTGAATCGCCTT
CGTTTTGTTTTTTTGGGGTCGCGCGCTGGTTTTAAGCATTTTATTCTGCG
TATCACAGCCGCGCCCCCCCATTCGACACGTACCGGTACAATACTAATAC
TGTATATTGTGCCCTTGTTTGGAGTATTTCCCTGGCCACAAAGGAGGCCG
TCGCTCCCACATTTCCTCGCAACCTTACAAGTAGCACCAGGCACAAAACA
ATACAACTGCTGTAGTACTGTGTACTCGATGTGTTAACTATATTTCGACC
CCTGTTCAAAGGAAAACGAGCATACTGTACAATGGAAGGGATCCTATCAT
AGGTGTGACCCCACCCCCTGTACCGCCTCCGTTTTTTATTTCCCCTCGGG
GCCCTCCTCGCCCCGACGTTTTCCCTTTTTCGCAGCCGAAGTTCAGGAGG
TTGCGGAAAACCTCTTTTACTTGGGGCGGGGCGGCATCAAGACCGTTGGA
AAACTCACGGTGGCGTTCTTGGGATCGAACCACAAGCCCGAAGGTGAATG
CTACAATATTTATTACGGAGGTACAGAGTAATTAGGACCTAGTGTTTGCT
GAATGTGATAGTGTATTCAAGTCTGGTTGTTTCAATCGTTGGGTCGAACT
CCTTGTGATAATTTGGTTTTCGGGTTTTTATTTGATATTTGAGGCCGGAG
GATTGGAGATATACGTTTAACGCACGTCGAATGGAAAGAAGCGGGCGTAA
AAACCGCGCATCCCAACATTGCCTGGACGGAGGGGTGTACTTTTAATACT
AATATAATAGTGCCGGGTTTTCGACGGCCAGGCTGCGCTTGACGAGGATG
ACACCAGCTGTTAGCCATGATATTATAACCAAATGCTGTGGGGGTAGATC
GTGCTTGGCTATCTCTCCCAGGGCTGTCCCCTAAAAATACAATGATTTCA
AAGACAGAGAGCGAGCGTTAGAGTCCCACCTTTTCAAAAAGGGAAGATGG
TCCAAGCTACCTCACTTGTTGCGTATGACGCTATGGTTCCATGTCACGCC
CCCCCCCCCCCCCCCTCGTTTACGGCGCGAACTCCGCAAGCACACACACG
ACACCCTCCCGAACAAACCGCCACCCACACCCCACCCCCCCCACCNNNNN
NNNNNAAAACGAAGAGGGCGCGTTGGAGTCCCCCCTTTTTAAAAAGGGAA
GAGGGCCCACGCTCCCCCCCTTGTTTTTTATTCCGCTTTGGTTCCTTTCC
CCCCCCCCCCCCCCCCCCCGTTAGATATGTATCCGAACCTCGATACCGAC
AAACACGCCAACAACATAGAACTCCTCGTCCTCACCCCCAACCCCACCCC
CTTCCGCCTCTGCGTCCATTTTCTCCATTTTTTTCACTGGCGAAACCTGG
ACACAAACACAAACACAAACACGCACCTGTCAGACATGGATAATTGCCGC
AAGGTGTCCGCCATGGGAGGTTACGGGGGCGCGGACATCCTCCTCTCGTC
GGAGTGGGGCCGCGGCATGGAGGTGGACCTGCCGGAGCGGTGCTTCGAGG
AGCTGAGGGCTGCCGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13025:1297..4363-

>mRNA_S-dermatodea_contig13025.1831.1 ID=mRNA_S-dermatodea_contig13025.1831.1|Name=mRNA_S-dermatodea_contig13025.1831.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig13025:1297..4363- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCCGGCGGTGCCTATCTACTTTTTTGAGCCGGGGGCTTCGGAGAGCCT
CGCGTCGAAGCTCGAAGAGAACACCTCCTCCGGCGGTGCCTATCTACTTT
TTTGAGCCGGGGGCTTCGGAGAGCCTCGCGTCGAAGCTCGAAGAGAACAC
CTCCGAAGTTCAGGAGGTTGCGGAAAACCTCTTTTACTTGGGGCGGGGCG
GCATCAAGACCGTTGGAAAACTCACGGTGGCGTTCTTGGGATCGAACCAC
AAGCCCGAAGCCGAAGTTCAGGAGGTTGCGGAAAACCTCTTTTACTTGGG
GCGGGGCGGCATCAAGACCGTTGGAAAACTCACGGTGGCGTTCTTGGGAT
CGAACCACAAGCCCGAAGACATGGATAATTGCCGCAAGGTGTCCGCCATG
GGAGGTTACGGGGGCGCGGACATCCTCCTCTCGTCGGAGTGGGGCCGCGG
CATGGAGGTGGACCTGCCGGAGCGGTGCTTCGAGGAGCTGAGGGCTGCCG
GGACATGGATAATTGCCGCAAGGTGTCCGCCATGGGAGGTTACGGGGGCG
CGGACATCCTCCTCTCGTCGGAGTGGGGCCGCGGCATGGAGGTGGACCTG
CCGGAGCGGTGCTTCGAGGAGCTGAGGGCTGCCGGG
back to top