mRNA_S-dermatodea_contig1298.1807.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1298.1807.1
Unique NamemRNA_S-dermatodea_contig1298.1807.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1298.1807.1 vs. uniprot
Match: A0A6H5JL95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL95_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 1.110e-88
Identity = 161/265 (60.75%), Postives = 189/265 (71.32%), Query Frame = 1 
Query:  199 RTTTTT---RRPCSGGR------SKPETKPPPTGPSASAKEPAPRASLFSVFLGRYTALLESRPLATKAITSGVIAFGGDISCQLISVQIAKGEDYAEEHQHELGLASPPP---NKVSFVAADIDWGRCARFTFLGAAFLAPALHYWYGFLIRTLPGTAVFTVVKRVALDQLVFTPVFLASFLSTIMVLDGNAAKITQKLRADYTTTLVGNWGYWIPGQIINFRFVGPVYQVLFANCLGFFWNVYLSYQSNKAVEDSAAGPLAPD 957
            R TTT+   RR C GG       +K   +PPPTG     K    RAS+FS+    Y +LLESRPLATKA+TSG IAF GD+SCQL+++++AK E+     QH        P      + VA++IDWGR  RFTF+GAA +APALH WYGFLIR LPGTA  TVVKRVALDQL+F PVFLA FLST+M+LDGNAAKI +KLRADY TT+V NWGYWIP Q+INFRFV PVYQVL+AN +GFFWN+YLSYQSNKAV      P A D
Sbjct:   24 RATTTSALPRRQCCGGSGTRSASTKVPAQPPPTGAPKPTKPT--RASIFSM----YNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEHSSAQHVDDHEQHEPFGDGGATSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPVFLAVFLSTVMLLDGNAAKIDRKLRADYPTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAAVD 282
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BLAST of mRNA_S-dermatodea_contig1298.1807.1 vs. uniprot
Match: D8LTH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH2_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 5.570e-84
Identity = 137/199 (68.84%), Postives = 159/199 (79.90%), Query Frame = 1 
Query:  337 YTALLESRPLATKAITSGVIAFGGDISCQLISVQIAKGEDYAEEHQHELGLASPPP---NKVSFVAADIDWGRCARFTFLGAAFLAPALHYWYGFLIRTLPGTAVFTVVKRVALDQLVFTPVFLASFLSTIMVLDGNAAKITQKLRADYTTTLVGNWGYWIPGQIINFRFVGPVYQVLFANCLGFFWNVYLSYQSNKAV 924
            Y +LLESRPLATKA+TSG IAF GD+SCQL+++++AK E+     Q    L    P        VA++IDWGR  RFTF+GAA +APALH WYGFLI+ LPGTA  TVVKRVALDQL+F P FLA FLST+M+LDGNAAKI +KLRADYTTTLV NWGYWIP Q+INFRFV PVYQVL+AN +GFFWN+YLSYQSNKAV
Sbjct:    2 YNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEKSSAQDVDELEHHEPFGDGGARSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIQRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTLVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAV 200
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BLAST of mRNA_S-dermatodea_contig1298.1807.1 vs. uniprot
Match: A0A835YNC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC4_9STRA)

HSP 1 Score: 185 bits (470), Expect = 2.110e-49
Identity = 104/230 (45.22%), Postives = 130/230 (56.52%), Query Frame = 1 
Query:  271 GPSASAKEPAPRASLFSVFLGRYTALLESRPLATKAITSGVIAFGGDISCQLISVQ-IAKGEDYAEEHQHELGLASPPPNKVSFVAA-DIDWGRCARFTFLGAAFLAPALHYWYGFLIRTLPGTAVFTVVKRVALDQLVFTPVFLASFLSTIMVLDGNAAKITQKLRADYTTTLVGNWGYWIPGQIINFRFVGPVYQVLFANCLGFFWNVYLSYQSNKAVEDSAAGPLAP 954
            G  + A +P    S     +  Y+ LLE+ P+ATKA+TS  IA  GDI CQ+ + + +A     A E     G A       S      +DW RCARF  L  A  APA H WYG L R LPG  +    KR+ALDQ VF+PVF+  F S +MVL+G AA+I  KLR DY TTLV NW  W+P Q+ NFR V   YQV  ANC+G FWN YLS+QS K ++ +      P
Sbjct:   29 GLKSEAVQPGAAESRSINIIQSYSRLLETNPIATKALTSAAIAGMGDIGCQIYTNRGLAAAAAGAGEAGSNAGAADGAATWGSTSQQRHLDWTRCARFMLLSGALFAPAAHAWYGLLGRLLPGQTLMVATKRMALDQFVFSPVFVGVFFSALMVLEGEAARIPDKLRQDYWTTLVSNWTLWMPAQLANFRLVPLQYQVGAANCVGLFWNAYLSFQSFKKIKSAPQSQPEP 258
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BLAST of mRNA_S-dermatodea_contig1298.1807.1 vs. uniprot
Match: A0A835YKC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKC9_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.440e-45
Identity = 102/229 (44.54%), Postives = 134/229 (58.52%), Query Frame = 1 
Query:  328 LGRYTALLESRPLATKAITSGVIAFGGDISCQLISV-----QIAKGE-DYAEEHQH--------------ELGLASPPPNKVSFVAADIDWGRCARFTFLGAAFLAPALHYWYGFLIRTLPG-TAVFTVVKRVALDQLVFTPVFLASFLSTIMVLDGNAAKITQKLRADYTTTLVGNWGYWIPGQIINFRFVGPVYQVLFANCLGFFWNVYLSYQSNKAVEDSAAGPLA 951
            L RY+ALL SRPL TK +T+ +IA  GD++CQL +      + A+GE D    H H              E G+A    ++  + A D+   R  +F  L AA  AP+ HYWY  L + + G TA+   VKR+ALDQ +F PVF+  F S +MV++G AAKI QKL+ DY  TLV NWG W+P Q+INFR V   YQVL+AN +GFFWN  +S Q  K   D    P+A
Sbjct:   25 LDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLK--RTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETLDDEEQPVA 251
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BLAST of mRNA_S-dermatodea_contig1298.1807.1 vs. uniprot
Match: A0A662Y1B5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1B5_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.200e-41
Identity = 90/217 (41.47%), Postives = 116/217 (53.46%), Query Frame = 1 
Query:  337 YTALLESRPLATKAITSGVIAFGGDISCQLISVQIAKGEDYAEEHQHELGLASPPPNKVSFVAAD----IDWGRCARFTFLGAAFLAPALHYWYGFLIRTLPGTAVFTVVKRVALDQLVFTPVFLASFLSTIMVLDGNAAKITQKLRADYTTTLVGNWGYWIPGQIINFRFVGPVYQVLFANCLGFFWNVYLSYQSNKAVEDSAAGPLAPDGKHLTS 975
            Y  LLE+ PL+TK +T G IA  GD+SCQL                              F+ AD     D  R A FTFLG A ++P LH WYGFL + +PG +   +VKR+ALDQLVF P FL  F S+++ L+G+  ++ +KLRAD+      NW  W+P QIINFRFV    QVLFAN +G  WN YLSY  +     S     A +    T+
Sbjct:   42 YATLLETHPLSTKIVTGGAIAGAGDVSCQL------------------------------FIEADDNGKFDVKRAAIFTFLGGALISPVLHVWYGFLGKLVPGVSSRAIVKRLALDQLVFAPTFLCVFFSSLLTLEGHLDQLPEKLRADWWPATKANWAVWVPAQIINFRFVPGSLQVLFANVVGLVWNSYLSYIGHLEAPSSKLEASASEANAATT 228
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BLAST of mRNA_S-dermatodea_contig1298.1807.1 vs. uniprot
Match: A0A4Q2YFM0_9BACT (Mpv17/PMP22 family protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2YFM0_9BACT)

HSP 1 Score: 159 bits (401), Expect = 1.040e-40
Identity = 86/210 (40.95%), Postives = 116/210 (55.24%), Query Frame = 1 
Query:  334 RYTALLESRPLATKAITSGVIAFGGDISCQLISVQIAKGEDYAEEHQHELGLASPPPNKVSFVAADIDWGRCARFTFLGAAFLAPALHYWYGFLIRTLPGTAVFTVVKRVALDQLVFTPVFLASFLSTIMVLDGNAAKITQKLRADYTTTLVGNWGYWIPGQIINFRFVGPVYQVLFANCLGFFWNVYLSYQSNKAVEDSAAGPLAPDGK 963
            +Y  LLE+ PL TK IT+G IA   D++CQ   V     ED                NK   +   +DW R   FT +      P  HYWYGFL   + GT     +KRV LDQ++F PV LASF S +++++G + +I  KLR D  TT++ N+  WIP Q+INF+FV   Y+VL+AN +GFFWN+YLSY +      SA      +GK
Sbjct:   34 QYNKLLETHPLMTKCITAGAIAAVADVTCQ---VSFPSDED---------------ANKS--LLERMDWKRTRNFTIVNTFLFPPLAHYWYGFLSVKIVGTTFMAAIKRVVLDQMLFAPVLLASFFSAVLLVNGESDRIPDKLRNDLPTTILTNYTVWIPAQLINFQFVPIPYRVLWANAVGFFWNIYLSYAAVNGTSSSAGDTEKKEGK 223
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BLAST of mRNA_S-dermatodea_contig1298.1807.1 vs. uniprot
Match: A0A7S4M7U8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M7U8_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.400e-39
Identity = 82/206 (39.81%), Postives = 122/206 (59.22%), Query Frame = 1 
Query:  307 ASLFSVFLGRYTALLESRPLATKAITSGVIAFGGDISCQLISVQIAKGEDYAEEHQHELGLASPPPNKVSFVAADIDWGRCARFTFLGAAFLAPALHYWYGFLIRTLPGTAVFTVVKRVALDQLVFTPVFLASFLSTIMVLDGNA-AKITQKLRADYTTTLVGNWGYWIPGQIINFRFVGPVYQVLFANCLGFFWNVYLSYQSNKA 921
            +S F   L  Y+ +L++ P+ATK +TSG IA  GD  CQ +  +  KG     + + +   A   PN +          R  RFTFLG AF+APA+H WYG L+   PG +   V+KR+ LDQ  F P+F+ +F+  +M L+G   A++  KL++DY  T++ NW  W+P Q++NFRF+   +QVLF N +GF WN Y S+++  A
Sbjct:   95 SSFFKQALAWYSHILDTHPIATKCLTSGFIAGSGDFLCQYLVFRNTKGVSGISKPEKD---AKFEPNML----------RTGRFTFLGFAFVAPAVHLWYGRLVMHFPGNSPAQVLKRLVLDQCFFAPLFVPAFMVNLMALEGRPLAEMPGKLKSDYFDTMITNWCLWVPAQLVNFRFIPLKFQVLFGNGIGFIWNTYFSWKTQDA 287
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BLAST of mRNA_S-dermatodea_contig1298.1807.1 vs. uniprot
Match: A0A484DWD7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWD7_BRELC)

HSP 1 Score: 154 bits (388), Expect = 7.890e-39
Identity = 85/196 (43.37%), Postives = 111/196 (56.63%), Query Frame = 1 
Query:  337 YTALLESRPLATKAITSGVIAFGGDISCQLISVQIAKGEDYAEEHQHELGLASPPPNKVSFVAADIDWGRCARFTFLGAAFLAPALHYWYGFLIRTLPGTAVFTVVKRVALDQLVFTPVFLASFLSTIMVLDGNAAKITQKLRADYTTTLVGNWGYWIPGQIINFRFVGPVYQVLFANCLGFFWNVYLSYQSNKAV 924
            Y +LL + PL+TK +T G IA  GDI CQ++     +GE                        A  D  R A FTFLG   ++P LH WYGFL   LPG +  T+ KR+ LDQ++F PVFL+ FLS++  L+G+A  I  KLRAD+      NW  W+P QIINFRFV    QVLF+N +G  WN YLS+ S+  +
Sbjct:   45 YASLLVTHPLSTKIVTGGTIAGLGDIGCQVL----LEGERKD---------------------AKFDLKRTAIFTFLGGVAVSPILHVWYGFLGSRLPGISKATITKRLVLDQIIFAPVFLSIFLSSVQALEGHADDIQDKLRADWWPLTKANWVIWVPAQIINFRFVPATMQVLFSNVMGLVWNSYLSFVSHSEI 215
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BLAST of mRNA_S-dermatodea_contig1298.1807.1 vs. uniprot
Match: A0A0L0G5N4_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G5N4_9EUKA)

HSP 1 Score: 152 bits (385), Expect = 1.860e-38
Identity = 88/201 (43.78%), Postives = 112/201 (55.72%), Query Frame = 1 
Query:  337 YTALLESRPLATKAITSGVIAFGGDISCQLISVQIAKGEDYAEEHQHELGLASPPPNKVSFVAADIDWGRCARFTFLGAAFLAPALHYWYGFLIRTLPGTAVFTVVKRVALDQLVFTPVFLASFLSTIMVLDGNAAKITQKLRADYTTTLVGNWGYWIPGQIINFRFVGPVYQVLFANCLGFFWNVYLSYQSNKAVEDSAA 939
            Y   LE+ PL TKA++SGVIA  GDI CQ+               +++   ++   NK S    +  W R   F+ LG  +L PALH WY  L R LPGT    V KR+A DQ VF PVF+ SF+S  ++L G  A + +KL   +  T+  NW  WIP Q INF FV P  QVLFANC+G  W+VYLS  SN     +AA
Sbjct:   43 YMRWLETYPLKTKALSSGVIAGLGDILCQV-------------GFENKSMFSAGDGNKGS----EFGWRRFFVFSALGGLYLGPALHMWYRVLGRVLPGTTQLAVAKRLAADQFVFAPVFIPSFMSLTLILQGKIADVPKKLADAWWPTVKANWAVWIPAQYINFSFVSPNLQVLFANCVGLVWHVYLSKVSNNDNTPAAA 226
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BLAST of mRNA_S-dermatodea_contig1298.1807.1 vs. uniprot
Match: A0A225WCL6_9STRA (Protein Mpv17 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WCL6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 7.030e-38
Identity = 83/196 (42.35%), Postives = 108/196 (55.10%), Query Frame = 1 
Query:  337 YTALLESRPLATKAITSGVIAFGGDISCQLISVQIAKGEDYAEEHQHELGLASPPPNKVSFVAADIDWGRCARFTFLGAAFLAPALHYWYGFLIRTLPGTAVFTVVKRVALDQLVFTPVFLASFLSTIMVLDGNAAKITQKLRADYTTTLVGNWGYWIPGQIINFRFVGPVYQVLFANCLGFFWNVYLSYQSNKAV 924
            Y +LL + PL+TK  T G IA  GD+ CQL+     +G+                           D  R A FT LG   ++P LH WYGFL   + G A   V+KR+ALDQL F P+FL  FLS+++ L+G+A  I  KLR D+ +    NWG W+P QI+NFRFV    QVLF+N +G  WN YLSY S+  V
Sbjct:   18 YASLLGTHPLSTKIATGGAIAGLGDVGCQLL----LEGDKR------------------------FDGKRTAIFTILGGFLISPVLHVWYGFLGSRVSGVATSAVMKRLALDQLGFAPIFLPVFLSSVLTLEGHAYDIPDKLRVDWWSVTKANWGVWVPAQILNFRFVPGPMQVLFSNVVGLLWNAYLSYVSHSTV 185
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1298.1807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL95_9PHAE1.110e-8860.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTH2_ECTSI5.570e-8468.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YNC4_9STRA2.110e-4945.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKC9_9STRA2.440e-4544.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662Y1B5_9STRA1.200e-4141.47Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A4Q2YFM0_9BACT1.040e-4040.95Mpv17/PMP22 family protein n=1 Tax=Verrucomicrobia... [more]
A0A7S4M7U8_9STRA2.400e-3939.81Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A484DWD7_BRELC7.890e-3943.37Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0L0G5N4_9EUKA1.860e-3843.78Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A225WCL6_9STRA7.030e-3842.35Protein Mpv17 n=1 Tax=Phytophthora megakarya TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1298contigS-dermatodea_contig1298:14198..18315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.3
Seed ortholog evalue8.3e-72
Seed eggNOG ortholog2880.D8LTH2
KEGG koko:K01301,ko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
EC3.4.17.21
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-02_005610.1
Exons5
Model size2319
Cds size903
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.835332-UTR-S-dermatodea_contig1298:14197..142841622924269.835332-UTR-S-dermatodea_contig1298:14197..14284Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 14198..14284 +
1694079139.4306095-UTR-S-dermatodea_contig1298:14197..142841694079139.4306095-UTR-S-dermatodea_contig1298:14197..14284Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 14198..14284 +
1622924269.8930724-UTR-S-dermatodea_contig1298:16986..183151622924269.8930724-UTR-S-dermatodea_contig1298:16986..18315Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 16987..18315 +
1694079139.4889712-UTR-S-dermatodea_contig1298:16986..183151694079139.4889712-UTR-S-dermatodea_contig1298:16986..18315Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 16987..18315 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.8447514-CDS-S-dermatodea_contig1298:14284..143451622924269.8447514-CDS-S-dermatodea_contig1298:14284..14345Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 14285..14345 +
1694079139.4425707-CDS-S-dermatodea_contig1298:14284..143451694079139.4425707-CDS-S-dermatodea_contig1298:14284..14345Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 14285..14345 +
1622924269.856537-CDS-S-dermatodea_contig1298:15304..155531622924269.856537-CDS-S-dermatodea_contig1298:15304..15553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 15305..15553 +
1694079139.4518878-CDS-S-dermatodea_contig1298:15304..155531694079139.4518878-CDS-S-dermatodea_contig1298:15304..15553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 15305..15553 +
1622924269.8654587-CDS-S-dermatodea_contig1298:15824..161741622924269.8654587-CDS-S-dermatodea_contig1298:15824..16174Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 15825..16174 +
1694079139.4628947-CDS-S-dermatodea_contig1298:15824..161741694079139.4628947-CDS-S-dermatodea_contig1298:15824..16174Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 15825..16174 +
1622924269.8749053-CDS-S-dermatodea_contig1298:16559..166671622924269.8749053-CDS-S-dermatodea_contig1298:16559..16667Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 16560..16667 +
1694079139.4710977-CDS-S-dermatodea_contig1298:16559..166671694079139.4710977-CDS-S-dermatodea_contig1298:16559..16667Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 16560..16667 +
1622924269.884148-CDS-S-dermatodea_contig1298:16851..169861622924269.884148-CDS-S-dermatodea_contig1298:16851..16986Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 16852..16986 +
1694079139.4802904-CDS-S-dermatodea_contig1298:16851..169861694079139.4802904-CDS-S-dermatodea_contig1298:16851..16986Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 16852..16986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1298.1807.1prot_S-dermatodea_contig1298.1807.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1298 14285..16986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1298.1807.1

>prot_S-dermatodea_contig1298.1807.1 ID=prot_S-dermatodea_contig1298.1807.1|Name=mRNA_S-dermatodea_contig1298.1807.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=301bp
MLLGAGSRRASPLLCSAARVGRASLPRTRYRTTQPVPRTTTTTRRPCSGG
RSKPETKPPPTGPSASAKEPAPRASLFSVFLGRYTALLESRPLATKAITS
GVIAFGGDISCQLISVQIAKGEDYAEEHQHELGLASPPPNKVSFVAADID
WGRCARFTFLGAAFLAPALHYWYGFLIRTLPGTAVFTVVKRVALDQLVFT
PVFLASFLSTIMVLDGNAAKITQKLRADYTTTLVGNWGYWIPGQIINFRF
VGPVYQVLFANCLGFFWNVYLSYQSNKAVEDSAAGPLAPDGKHLTSNESE
*
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mRNA from alignment at S-dermatodea_contig1298:14198..18315+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1298.1807.1 ID=mRNA_S-dermatodea_contig1298.1807.1|Name=mRNA_S-dermatodea_contig1298.1807.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4118bp|location=Sequence derived from alignment at S-dermatodea_contig1298:14198..18315+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCTGCTCTGCTGTTCTGTGCTGCGCGTCGACACCAGGCTGCTGTCGAG
GGGTGATCCATAGACTGCCTGGGACCTGGCTAGGACGATGCTTTTAGGTG
CTGGGTCGAGGAGAGCTTCCCCTCTGCTGTGTTCTGCAGCACGAGTCGGT
GAGCATGGTAGGATGGTATATAGCTTGAGTACAAAACGAGAGGCACACCA
GCGCGAAGCCGCCGCTGCCAGGCTTCCAATCCAGTTCTCCAGCTCCGTAG
ATGCCTTGGGAAGCGAACGTAGAAACAGCCGCTGCCACCACTTGCACGTG
ATGGCAATGCACGGCAAATCGACCGGGCGGTTTGGACGATAAAATTATGA
CGGGGATGCGATGCCCCAGCCTCTCAAGAGGACAGCTATGATACACATCA
TATGCATCGTTTCGTATCATATGCATCCAAATATACTACGAAGTATATAC
TCTGTAAATAGAGTGTTGTTAAATTGTAGCCCTCAGCTCTAGTGTAGATC
TCAGCTCTAGAGCCTAGAGCTTATGACTTCTAGCTCTATCGATCGTATGA
TGTGCATCCATTTCATAATGGATGTCCGAGCAGGCCGTGTACCATTATGT
ATGAGGACGAAAGTGTGGACCTATGCCATAGCAGCTGCTACTTGTAGTCC
GGGGCGCTTCCCTGCTCAACGGAAACCCGCTCAGTTGATAACAACATAAT
AACAGGCATAAGGAAGTGGGCAACAGCAGTATCACATACTGGTATGTGTC
TTTGCATTGGTGAGGACGCCTGAGACGTTGGTCAGCTTCACAGCCCGCAG
TTTGCGTGTCTCCCACGACTTATAATATTAGTACTACTGCTGTGTTGTGT
GCAAACCAAACAATCAATTGTGGTACAGCAGTATCAGTATTATAGTTTCG
GATGTCATCGTGTGACGTGAAAAGACGAAATTGCAGACGTTGAACTCGTG
AGCAGGGCGAACCAGGAGACCGAATTGGCAACACCACAGCAGCTGTAATA
GCTCATCGACAAGATAAACCTGCTCTCTGGATAGATAGGTTCCTACGGCG
CAGATCCATCCAAACTCCGCCCTTCGCCGTTCTTTGCATCGCATCATTCG
ACACTAGGTCGAGCAAGCCTGCCGCGCACGCGATATCGAACAACTCAACC
CGTTCCGCGAACAACGACGACAACAAGGCGGCCATGTAGCGGGGGGAGAT
CGAAGCCGGAGACAAAGCCACCACCTACGGGTCCCAGCGCGTCGGCCAAG
GAGCCTGCACCTCGGGCGTCGTTGTTTTCGGTATTCCTCGGGCGATATAC
CGCTCTACTGGAGTCTAGACCTTTGGCGACGAAAGCGATCACTTCGGGAG
TAATCGGTGAGTCGTCGTGAGGGGTGCACCTTGCGAATGAGAAATTGTTT
CGGGAGTCTCCGATAGTACCTGCTGGATGGTCAGCTGTTTTGAGGCCGCT
ATAATACCTTGAAAAGGCATGGTCGACCCTCGATTTGGTCACTTCCTGGT
ACGGGGAGTGAAAGCCCCTACGTGGCGCGAGAGGTGAACTACGGATCGGC
TTGATGAACCAAGCAGAAGATATCCCCCTCCCTGTGTTGTCGCCGCGTCA
CGTGCCTCGTATGTCCGCTTTACGCAGCCTTTGGAGGGGACATATCGTGC
CAGCTGATATCGGTTCAGATCGCGAAGGGTGAGGACTATGCAGAGGAACA
CCAACACGAACTTGGCTTGGCCTCCCCCCCACCGAACAAGGTCTCGTTCG
TCGCGGCTGATATCGATTGGGGCCGATGCGCGCGCTTCACGTTCCTCGGA
GCCGCGTTCCTTGCGCCCGCACTGCACTACTGGTATGGTTTCTTGATCCG
AACTCTTCCAGGCACGGCTGTGTTCACCGTGGTGAAGAGAGTGGCGCTAG
ACCAGCTGGTATTTACGCCGGTGTTTCTGGCGAGTTTTTTGTCCACGATC
ATGGTTCTCGACGGCAACGCCGCCAAGGTAAGACTGAACGATCTCGCGCA
CAGCTGCAGTAACATCGTTGGTGGGCAAGTTATCGTGTGCTGCTGAGTTA
TTTCGCTTACAGGACGACGAAAGCTTCCCGGCCGGTGCTGGTTTCTTATT
TGCTGTCTCGCTTTTTCATGCGCCAGTTGCAGACTCTGCTCGAGTCGCTA
CGTTGGCCGAGTTATGTGTTCCTGGCCATCTTGTTTCCAGTTTGGCAAAG
ATGTTGTTACTCAAGGGTATGTTCTTGTCATTGGCAACCGCCGTTGGTAG
ACAGTATGTCGGGTTTTTTTATCGCAGACTAGAAAACCCGCTATTGTGCT
GTGCAGGTAAGCTCCGCCTGCGACTAATGATCACCATGTCCTGACGTTTT
CGTTTCGCCCAGATAACACAAAAACTCCGCGCCGACTACACCACCACACT
TGTGGGCAACTGGGGCTACTGGATACCTGGTCAAATAATAAACTTCCGCT
TCGTTGGCCCTGTCTACCAGGTGCGCTGACCACAGAGATAGATGTGTTCT
CGCCATTCATGGGCATATCGACCGAGTTTGTGCGTATGATACCCTCTCCC
TCGCCGCCACCTGACAAAACCTGCGAATTTGCAAATAAAATCTCTACGTT
TTTGCTTTTTCGCACGTTACGACGATTTCTTGCTGACCGTCGTTGGTGCT
CAAGGTGCTGTTCGCCAACTGCCTTGGATTCTTCTGGAACGTCTACCTTT
CCTACCAGTCCAACAAGGCAGTTGAGGACTCTGCCGCAGGCCCTCTTGCG
CCGGACGGAAAACATCTGACATCAAACGAATCTGAGTGAAAGTGTCGAAT
TTCCCTGTTCGGATGCGAAAGAGGTCGATCAAGAAGCGCGAAGTGGTGGG
AGCGTGGACGCAATGGTCGTGATTGGGTTGTGCTACAGTAAGCGCTTCAT
AGCTGTCAACGGAGGCGATTGTAGGCATCTGCCGGGCGTACCAATCAGCA
GTCGCCGCCTGTGTCGTGTTAAGATGGCAAGGGTGTATGGCGCTCAGAAA
TACCCCTTTGATTATACTGCTGTAGTACATGAGTAGCTCGCGAAGTAGTT
CGCGATGGTTTGATATACCGGCAATTCACACGGTTTATCGTCCTGATATA
CGTGTAACACAATTTTTATGGTGAAGATTAGTGGATCCCAGTTTGTTCGC
GATGGTTTTGAGTTGTCGGTTCTTCACGTTTGCCTGTACTGATGCTCCCC
CGTTTGTGGTGACCGATGGGCGTAAGTTACGGTAGTGTGGCGTGCCCATG
TGCCGAGACGGCGATACACGATGGATTGATGGTCGGTATGGCTCGATTCT
GTAGGAGAGAAATGGTTCCTACAGCGAATAATTCCCTGAAAATGAGATAA
AACTGTTGGCTCAGACGCGTACTAGGCGAATGCCACGTGCTCTGCGACAC
AGCAGTGTTCAGTTGTCGTGAACTGTTAAAACACCGGAGTACACGTGTTA
CTCGCCCCAGGGAAGGTGTGTCGGTAAGCCTCGGGACAAACAAATGCCGT
TGCGGTGCGGGTGCTTGCGGCCGAGCAAGCCCGCTGTTGCCATCTGTAGG
TGCAGTCTCAACATTTCATGGCCGCCCCTGCAGATTTGCCGCTTGGGTGG
ACTCGTCGGCTTTCCTCAACTAACTGAGCTGTGGAGGTTTTGAAGGAAAA
CTATTTATAGAGTGGTCGCAACGTCAAGTTGGGCTATTGTACATATGATA
GTGTAGAACAGAAGGCCGCTGATGACGTGGTATTCCGGCGGAGAATAGTT
ACAGTATCATAACAGACCCGAATATTGAAATGTTGAATTGGCCACGAGTG
TCTCTTCGGAATCTTGCTCTTTAGTATTTATTTATTTCTGTATGTGTACA
GGAGAGGAATCTAGGCGGGAAGGTCGCAGATGTTGTAGAGCTCTCAGGGC
CAGACTGACTTTTCAAGAAGGTGGTTTATTCATTAGTAGCGAGCAGGACT
TTTCGTGTAGATTTGGTTCCATTAACTGCTGTGTTCCTCCGTTAAAGCAG
CAAGGATGCACCGAATCAACCATTACAAAACGACACAAACAGGTAAATAT
TTACGATCTGGGAACAAGTACCCAATTTCCTGGACGATGTGCGCAGGAGA
TGGCGGCAAAGTCATGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1298:14198..18315+

>mRNA_S-dermatodea_contig1298.1807.1 ID=mRNA_S-dermatodea_contig1298.1807.1|Name=mRNA_S-dermatodea_contig1298.1807.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at S-dermatodea_contig1298:14198..18315+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTTTTAGGTGCTGGGTCGAGGAGAGCTTCCCCTCTGCTGTGTTCTGC
AGCACGAGTCGATGCTTTTAGGTGCTGGGTCGAGGAGAGCTTCCCCTCTG
CTGTGTTCTGCAGCACGAGTCGGTCGAGCAAGCCTGCCGCGCACGCGATA
TCGAACAACTCAACCCGTTCCGCGAACAACGACGACAACAAGGCGGCCAT
GTAGCGGGGGGAGATCGAAGCCGGAGACAAAGCCACCACCTACGGGTCCC
AGCGCGTCGGCCAAGGAGCCTGCACCTCGGGCGTCGTTGTTTTCGGTATT
CCTCGGGCGATATACCGCTCTACTGGAGTCTAGACCTTTGGCGACGAAAG
CGATCACTTCGGGAGTAATCGGTCGAGCAAGCCTGCCGCGCACGCGATAT
CGAACAACTCAACCCGTTCCGCGAACAACGACGACAACAAGGCGGCCATG
TAGCGGGGGGAGATCGAAGCCGGAGACAAAGCCACCACCTACGGGTCCCA
GCGCGTCGGCCAAGGAGCCTGCACCTCGGGCGTCGTTGTTTTCGGTATTC
CTCGGGCGATATACCGCTCTACTGGAGTCTAGACCTTTGGCGACGAAAGC
GATCACTTCGGGAGTAATCGCCTTTGGAGGGGACATATCGTGCCAGCTGA
TATCGGTTCAGATCGCGAAGGGTGAGGACTATGCAGAGGAACACCAACAC
GAACTTGGCTTGGCCTCCCCCCCACCGAACAAGGTCTCGTTCGTCGCGGC
TGATATCGATTGGGGCCGATGCGCGCGCTTCACGTTCCTCGGAGCCGCGT
TCCTTGCGCCCGCACTGCACTACTGGTATGGTTTCTTGATCCGAACTCTT
CCAGGCACGGCTGTGTTCACCGTGGTGAAGAGAGTGGCGCTAGACCAGCT
GGTATTTACGCCGGTGTTTCTGGCGAGTTTTTTGTCCACGATCATGGTTC
TCGACGGCAACGCCGCCAAGCCTTTGGAGGGGACATATCGTGCCAGCTGA
TATCGGTTCAGATCGCGAAGGGTGAGGACTATGCAGAGGAACACCAACAC
GAACTTGGCTTGGCCTCCCCCCCACCGAACAAGGTCTCGTTCGTCGCGGC
TGATATCGATTGGGGCCGATGCGCGCGCTTCACGTTCCTCGGAGCCGCGT
TCCTTGCGCCCGCACTGCACTACTGGTATGGTTTCTTGATCCGAACTCTT
CCAGGCACGGCTGTGTTCACCGTGGTGAAGAGAGTGGCGCTAGACCAGCT
GGTATTTACGCCGGTGTTTCTGGCGAGTTTTTTGTCCACGATCATGGTTC
TCGACGGCAACGCCGCCAAGATAACACAAAAACTCCGCGCCGACTACACC
ACCACACTTGTGGGCAACTGGGGCTACTGGATACCTGGTCAAATAATAAA
CTTCCGCTTCGTTGGCCCTGTCTACCAGATAACACAAAAACTCCGCGCCG
ACTACACCACCACACTTGTGGGCAACTGGGGCTACTGGATACCTGGTCAA
ATAATAAACTTCCGCTTCGTTGGCCCTGTCTACCAGGTGCTGTTCGCCAA
CTGCCTTGGATTCTTCTGGAACGTCTACCTTTCCTACCAGTCCAACAAGG
CAGTTGAGGACTCTGCCGCAGGCCCTCTTGCGCCGGACGGAAAACATCTG
ACATCAAACGAATCTGAGTGAGTGCTGTTCGCCAACTGCCTTGGATTCTT
CTGGAACGTCTACCTTTCCTACCAGTCCAACAAGGCAGTTGAGGACTCTG
CCGCAGGCCCTCTTGCGCCGGACGGAAAACATCTGACATCAAACGAATCT
GAGTGA
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