mRNA_S-dermatodea_contig12907.1769.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12907.1769.1 vs. uniprot
Match: D7FIV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIV7_ECTSI) HSP 1 Score: 209 bits (532), Expect = 2.830e-60 Identity = 101/153 (66.01%), Postives = 126/153 (82.35%), Query Frame = 1
Query: 10 GLADDVDATLAECSLKLGDGPGAANMYMQVLERTEEKHVEALVGYGKLAILVNQVDKGVQSLLKAIITDQGHKETRKVMAQALGMPVGMATLRQQVAPTPDSASVYSFLSTVCKDHGEIEASIELLKVAASIDPRNASSALGLVHGHEIAGDY 468
GL DD DA LA C K+GD PGA NMYM+VL+RT EKH+E+LVGYG+LA+L Q DKGV SLL+AI++DQ +KETRKV+A +LG+P GM + QV P+ +++SVYSFL+TV KD+GEI+AS++LL+VAASIDP NAS ALGLVHGHEI DY
Sbjct: 265 GLVDDADAALAFCRFKMGDAPGAGNMYMEVLQRTGEKHIESLVGYGRLALLFKQTDKGVPSLLRAIMSDQDNKETRKVLAGSLGIPEGMKAFKAQVVPSKETSSVYSFLATVTKDYGEIDASVQLLEVAASIDPTNASCALGLVHGHEIRADY 417
BLAST of mRNA_S-dermatodea_contig12907.1769.1 vs. uniprot
Match: A0A835ZAX8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAX8_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 6.570e-20 Identity = 65/185 (35.14%), Postives = 90/185 (48.65%), Query Frame = 1
Query: 16 ADDVDATLAECSLKLGDGPGAANMYMQVLERT--------EEKHVEALVGYGKLAILVNQVDKGVQSLLKAIIT-DQGHKETRKVMAQALGMPVGMATLRQQVAPTPDS----------------------------ASVYSFLSTVCKDHGEIEASIELLKVAASIDPRNASSALGLVHGHEIA 459
A+D+D L C+L G G A+++ VLERT E++H ALVGY LA+ Q V L++ + T DQ HKE R+++A AL +P GM L + P DS ASVY+FL +V KDH +++A+ L A + P NA+ AL L H E A
Sbjct: 342 AEDIDTELGWCNLHSGRLQGGADLFQAVLERTQQAVLERMEQRHTGALVGYATLALASGQAAAAVSPLVRVVATTDQKHKELRQLIAAALALPAGMEALLAMLPPASDSTVHIRTXXXXXXXXXXXXSASVCAFLGIASVYAFLGSVVKDHSKLDAAAVLFCNALAQAPANAAYALSLAHCLEAA 526
BLAST of mRNA_S-dermatodea_contig12907.1769.1 vs. uniprot
Match: A0A7S4A4Z0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4Z0_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 8.670e-20 Identity = 59/153 (38.56%), Postives = 86/153 (56.21%), Query Frame = 1
Query: 13 LADDVDATLAECSLKLGDGPGAANMYMQVLERTEEKHVEALVGYGKLAILVNQVDKGVQSLLKAIITDQGHKETRKVMAQALGMPVGMATLRQQVAPTPDS-ASVYSFLSTVCKDHGEIEASIELLKVAASIDPRNASSALGLVHGHEIAGDY 468
L +D LA L G G A VL++ + H A V Y ++A ++ D+ + +L+A++ DQ +K+ R+ A A+ G LR+Q+A DS A+ +FL+TVCKDHG +E S ELL+ AA P +AS AL L+H EI DY
Sbjct: 203 LMEDAGVELARAQLSEGRGQEACATCELVLKKNPQ-HCGATVAYSQVARAFHKKDEELSLILRAVVMDQENKDARRGAALAISDEGGFDRLRKQLADPRDSPAAAVAFLATVCKDHGRVEVSAELLQWAADDVPSSASYALNLLHAREILNDY 354
BLAST of mRNA_S-dermatodea_contig12907.1769.1 vs. uniprot
Match: D7G1Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q8_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 6.570e-15 Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 58 LGDGPGAANMYMQVLERTEEKHVEALVGYGKLAILVNQVDKGVQSLLKAIITDQ----GHKETRKVMAQALGMPVGMAT 282
+GD GA N+YM VL RT EKH+E+LVGYG+LA++ NQ DKGV SLL+AI+T Q G T V A G AT
Sbjct: 1 MGDALGARNVYMAVLRRTGEKHIESLVGYGRLALMSNQADKGVSSLLRAIMTAQMPWCGAVWTHDVQPAADSTAAGEAT 79
BLAST of mRNA_S-dermatodea_contig12907.1769.1 vs. uniprot
Match: UPI000644823E (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644823E) HSP 1 Score: 57.8 bits (138), Expect = 8.700e-7 Identity = 36/130 (27.69%), Postives = 72/130 (55.38%), Query Frame = 1
Query: 100 LERTEEKHVEALVGYGKLAILVNQVDKGVQSLLKAIITDQGHKETRKVMA----QALG---MPVGMATLRQQVAPTPDSASVYSFLSTVCKDHGEIEASIELLKVAASIDPRNASSALGLVHGHEIAGDY 468
++ T+E +++ L+G+ + ++ N+ +L +++ G+ R +A +AL G + Q+ T ++A V +F+S+V K++G IEAS++ +K A +DP NA+ A ++HG E+ Y
Sbjct: 304 VKNTDEGNLQGLIGFAYV-LIDNKRHNDALLVLMQLLSRMGNSGDRNPVANYTKEALADYAREFGAQQILVQLKDTLNTAPVLAFMSSVVKEYGAIEASVDFMKQALQMDPTNANYAHNVLHGLEVCNKY 432
BLAST of mRNA_S-dermatodea_contig12907.1769.1 vs. uniprot
Match: A0A061S9Z0_9CHLO (Tpr-like protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S9Z0_9CHLO) HSP 1 Score: 54.7 bits (130), Expect = 9.100e-6 Identity = 31/94 (32.98%), Postives = 54/94 (57.45%), Query Frame = 1
Query: 175 DKGVQSLLKAIITDQGHKETRKVMAQALGMPVGMATLRQQVAPTPDSASVYSFLSTVCKDHGEIEASIELLKVAASIDPRNASSALGLVHGHEI 456
+ ++ LL+ ++ KE R+ +A+A+ P + + ++ +A+ +FL+T KDHG IEA+IEL + A S+ P S AL L+H E+
Sbjct: 3 EDAIRVLLRLLVDRPKSKEVRRSLAEAVSKPGMLDAMVSELTGEAYTAAALAFLATCVKDHGAIEAAIELFRRADSLSPC-PSYALNLIHTEEL 95 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12907.1769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12907.1769.1 >prot_S-dermatodea_contig12907.1769.1 ID=prot_S-dermatodea_contig12907.1769.1|Name=mRNA_S-dermatodea_contig12907.1769.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=157bp ATRGLADDVDATLAECSLKLGDGPGAANMYMQVLERTEEKHVEALVGYGKback to top mRNA from alignment at S-dermatodea_contig12907:1627..5315- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12907.1769.1 ID=mRNA_S-dermatodea_contig12907.1769.1|Name=mRNA_S-dermatodea_contig12907.1769.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3689bp|location=Sequence derived from alignment at S-dermatodea_contig12907:1627..5315- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12907:1627..5315- >mRNA_S-dermatodea_contig12907.1769.1 ID=mRNA_S-dermatodea_contig12907.1769.1|Name=mRNA_S-dermatodea_contig12907.1769.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at S-dermatodea_contig12907:1627..5315- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |